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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917603
Clone id YMU001_000103_A01
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGATGGCAGAGGAAAGGAAGGCAAGCGCCGAGGCTGTGAGGGCTACAAAAACTGCAAG
AGTAGCACAGGAAGCCGATGACATTCGAAGAACTGGCAGAGTGCCGTCGACAGCAAATGT
GGGCTGTTACCCTTTCTGAAAGCGAACATCATGGCCAATGTGCTTGGCATTTGGCCAAGG
TCCTGCGCTGTAGGTGATTTTTGCTGATCTTCTTTTCAGTTGTGCCTAGTAGAAAGACTT
GAAAAGCAGAGAGCATTAAGGATTGGTAATGATCTAGTGATGCAAAGCTCCCAAAGAGGA
AAACTTGATATGATAGTGCCTGCTAATTAGCTGACTCTGCAGAGTTTCCAAGTAGACTGG
TTAAGTAGGTAATGAAGTGGAATACCATAGAAGCTGTGTTCCCCCAAACATGA
■■Homology search results ■■ -
sp_hit_id Q9HHA8
Definition sp|Q9HHA8|HAS8_HALS8 Halocin-S8 OS=Haloarchaeon S8a
Align length 97
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917603|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_A01.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HHA8|HAS8_HALS8 Halocin-S8 OS=Haloarchaeon S8a GN=halS8 PE=...    30   2.9  
sp|Q1ML15|RRMJ_RHIL3 Ribosomal RNA large subunit methyltransfera...    30   3.8  
sp|Q2KC36|RRMJ_RHIEC Ribosomal RNA large subunit methyltransfera...    30   4.9  
sp|P13043|GVPD1_HALSA Protein gvpD 1 OS=Halobacterium salinarium...    29   6.5  

>sp|Q9HHA8|HAS8_HALS8 Halocin-S8 OS=Haloarchaeon S8a GN=halS8 PE=1
           SV=1
          Length = 311

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
 Frame = -2

Query: 268 YQSLMLSAFQVFLLGTTEKKISKNHLQRRTLAKCQAHWP*CSLSERVTAHICCRRHSASS 89
           + + +L  F++   GT+  KIS     +      + H    S  + +     C  +S ++
Sbjct: 181 FNNKVLEMFELATGGTSSGKISPTREDQNHEYNVREHKVFNSEKQNIQLQSDCNINSNTA 240

Query: 88  SNVIGFLCY----SCSFCSPHSLG------ACLPFLC 8
           ++VI  LC+    SC+ CSP  +G      ACL  +C
Sbjct: 241 ADVI--LCFNQVGSCALCSPTLVGGPVPTVACLLVVC 275


>sp|Q1ML15|RRMJ_RHIL3 Ribosomal RNA large subunit methyltransferase
           J OS=Rhizobium leguminosarum bv. viciae (strain 3841)
           GN=rrmJ PE=3 SV=1
          Length = 239

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 182 DLGQMPSTLAMMFAFRKGNSPHLLSTALCQFFECHRLP---VLLLQFL*PSQPRRL 24
           DLG  P + + + A   G++   +  A   F E  +LP   +L L FL PS P +L
Sbjct: 75  DLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLDFLDPSAPEKL 130


>sp|Q2KC36|RRMJ_RHIEC Ribosomal RNA large subunit methyltransferase
           J OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rrmJ
           PE=3 SV=1
          Length = 239

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 182 DLGQMPSTLAMMFAFRKGNSPHLLSTALCQFFECHRLP---VLLLQFL*PSQPRRL 24
           DLG  P + + + A   G++   +  A   F E  +LP   +L L FL PS P +L
Sbjct: 75  DLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVWILQLDFLDPSAPGKL 130


>sp|P13043|GVPD1_HALSA Protein gvpD 1 OS=Halobacterium salinarium
           GN=gvpD11 PE=4 SV=1
          Length = 536

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 235 RLEKQRALRIGNDLVMQSSQRGKLDMIVPAN*LTLQS 345
           RL+K R +RIGN L   +   G+  +I P   LT+Q+
Sbjct: 209 RLDKLRGVRIGNRLQPFTLADGQFQVITPVELLTIQT 245
tr_hit_id B6THQ1
Definition tr|B6THQ1|B6THQ1_MAIZE DNA binding protein OS=Zea mays
Align length 42
Score (bit) 44.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917603|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_A01.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6THQ1|B6THQ1_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       45   0.002
tr|Q6ZGM2|Q6ZGM2_ORYSJ Os02g0116800 protein OS=Oryza sativa subs...    44   0.003
tr|A2X045|A2X045_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A7QBS2|A7QBS2_VITVI Chromosome chr1 scaffold_75, whole genome...    44   0.004
tr|B6TTY2|B6TTY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       42   0.012
tr|B4FMW9|B4FMW9_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|A7PNI6|A7PNI6_VITVI Chromosome chr1 scaffold_22, whole genome...    42   0.015
tr|A9RXM6|A9RXM6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A3BF83|A3BF83_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.034
tr|A2XPW1|A2XPW1_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|Q7XII4|Q7XII4_ORYSJ Os07g0569100 protein OS=Oryza sativa subs...    40   0.045
tr|B7FHG7|B7FHG7_MEDTR Putative uncharacterized protein OS=Medic...    40   0.045
tr|B4FGZ5|B4FGZ5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.045
tr|A2YMT1|A2YMT1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.045
tr|A2Q3K8|A2Q3K8_MEDTR Remorin, C-terminal region OS=Medicago tr...    40   0.045
tr|Q9ZUM1|Q9ZUM1_ARATH Expressed protein (At2g02170/F5O4.6) OS=A...    40   0.058
tr|A7PWD2|A7PWD2_VITVI Chromosome chr8 scaffold_34, whole genome...    40   0.076
tr|Q84ZN5|Q84ZN5_ORYSJ Os07g0208600 protein OS=Oryza sativa subs...    39   0.13 
tr|A2YJC6|A2YJC6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|B4F904|B4F904_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.17 
tr|Q9SR48|Q9SR48_ARATH Putative uncharacterized protein F12B7.14...    38   0.22 
tr|Q8LGG6|Q8LGG6_ARATH Putative uncharacterized protein OS=Arabi...    38   0.22 
tr|Q84WA0|Q84WA0_ARATH Putative uncharacterized protein At1g6759...    38   0.22 
tr|B6TND2|B6TND2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       38   0.29 
tr|B4FCA8|B4FCA8_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|A9SCI2|A9SCI2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|Q7XS35|Q7XS35_ORYSJ OSJNBa0058K23.18 protein OS=Oryza sativa ...    37   0.64 
tr|Q1ENZ3|Q1ENZ3_MUSAC Remorin-related OS=Musa acuminata GN=MA4_...    37   0.64 
tr|Q0JA18|Q0JA18_ORYSJ Os04g0620200 protein (Fragment) OS=Oryza ...    37   0.64 
tr|Q01JU6|Q01JU6_ORYSA H0714H04.6 protein OS=Oryza sativa GN=H07...    37   0.64 

>tr|B6THQ1|B6THQ1_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1
          Length = 339

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPSTANVGC 127
           +MAEE++ASAEA    + AR +++A+ IRRTG +PS+  + C
Sbjct: 291 RMAEEKRASAEAKLNERAARTSEKANYIRRTGHLPSSFKISC 332


>tr|Q6ZGM2|Q6ZGM2_ORYSJ Os02g0116800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1442_E05.21 PE=2 SV=1
          Length = 510

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/41 (48%), Positives = 32/41 (78%)
 Frame = +2

Query: 8   AEERKASAEAVRATKTARVAQEADDIRRTGRVPSTANVGCY 130
           A+E++A+AE  R+   A+ A++AD IRRTGR+PS  ++GC+
Sbjct: 468 ADEKRAAAELKRSRAAAKTAEQADHIRRTGRMPS--SIGCW 506


>tr|A2X045|A2X045_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05585 PE=4 SV=1
          Length = 510

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/41 (48%), Positives = 32/41 (78%)
 Frame = +2

Query: 8   AEERKASAEAVRATKTARVAQEADDIRRTGRVPSTANVGCY 130
           A+E++A+AE  R+   A+ A++AD IRRTGR+PS  ++GC+
Sbjct: 468 ADEKRAAAELKRSRAAAKTAEQADHIRRTGRMPS--SIGCW 506


>tr|A7QBS2|A7QBS2_VITVI Chromosome chr1 scaffold_75, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035088001
           PE=4 SV=1
          Length = 305

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPST 112
           ++AEE++ASAEA    K AR ++ AD IRRTGR+PS+
Sbjct: 259 RIAEEKRASAEAKLNEKAARTSERADYIRRTGRLPSS 295


>tr|B6TTY2|B6TTY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1
          Length = 259

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPST 112
           + AEE++ASAEA R TK ARV + A+ +R  GR PST
Sbjct: 164 RKAEEKRASAEAKRGTKVARVLELANFMRAVGRAPST 200


>tr|B4FMW9|B4FMW9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 294

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPST 112
           + AEE++ASAEA R TK ARV + A+ +R  GR PST
Sbjct: 253 RKAEEKRASAEAKRGTKVARVLELANFMRAVGRAPST 289


>tr|A7PNI6|A7PNI6_VITVI Chromosome chr1 scaffold_22, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021272001
           PE=4 SV=1
          Length = 393

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 18/35 (51%), Positives = 29/35 (82%)
 Frame = +2

Query: 8   AEERKASAEAVRATKTARVAQEADDIRRTGRVPST 112
           AEE++A+AEA R+ + A+  Q+A+ IR+TGR+PS+
Sbjct: 351 AEEKRAAAEAKRSRQAAKTEQQAEYIRKTGRIPSS 385


>tr|A9RXM6|A9RXM6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121011 PE=4 SV=1
          Length = 189

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPST 112
           + AEE +A AEA+R  + A+ A  ++DIRRTG+VP++
Sbjct: 146 RRAEELRAKAEALRCEQAAKTATRSEDIRRTGKVPTS 182


>tr|A3BF83|A3BF83_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021705 PE=4 SV=1
          Length = 358

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPS 109
           +MAEE++A+AEA      AR  Q+AD IRRTG +PS
Sbjct: 312 RMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPS 347


>tr|A2XPW1|A2XPW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14669 PE=4 SV=1
          Length = 358

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +2

Query: 2   KMAEERKASAEAVRATKTARVAQEADDIRRTGRVPS 109
           +MAEE++A+AEA      AR  Q+AD IRRTG +PS
Sbjct: 312 RMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPS 347