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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917605
Clone id YMU001_000103_A03
Library
Length 392
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGTAAGATAAACTAGAGAATAATGAGAATCGCTGTACAAAGTTAAAATAGTGGGCAAGA
TTATGGCTATAACAGATACCAAAGGTGTCTAAAGTGGTAATTTCAAAAGGAAATATGCTC
AAATAAAATGAGTAAAACAATCACCTGGCTAACAATATGGGCACACAGTTTCCAAATGGT
ATAGTAACATGGACAAAACTATATCCTAGTCAGCAGTCATCCATATGGCACATGAGCTAC
AACCACAGGTATGCTATGACTGATGAAGCCTTGATGGGCTATTCCAGAAAATGTACACAT
ATTTGTACATACAAAGGCACCCATGCTCCATGTATATGAGGCACATGCCCTATCCATTTC
ACTCTGAAGGGTTACAATTTCCAACATGGTCC
■■Homology search results ■■ -
sp_hit_id P30929
Definition sp|P30929|L_MUMPM Large structural protein OS=Mumps virus (strain Miyahara vaccine)
Align length 25
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917605|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_A03.
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30929|L_MUMPM Large structural protein OS=Mumps virus (strai...    30   4.9  

>sp|P30929|L_MUMPM Large structural protein OS=Mumps virus (strain
           Miyahara vaccine) GN=L PE=3 SV=1
          Length = 2261

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 76  SVIAIILPTILTLYSDSHYSLVYLT 2
           S + II P ++ LYS+ H +L YLT
Sbjct: 212 STLCIIAPELVALYSNEHKALTYLT 236
tr_hit_id A8LEC9
Definition tr|A8LEC9|A8LEC9_FRASN Glycoside hydrolase family 2 sugar binding OS=Frankia sp. (strain EAN1pec)
Align length 41
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917605|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_A03.
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8LEC9|A8LEC9_FRASN Glycoside hydrolase family 2 sugar bindin...    33   7.1  

>tr|A8LEC9|A8LEC9_FRASN Glycoside hydrolase family 2 sugar binding
           OS=Frankia sp. (strain EAN1pec) GN=Franean1_3193 PE=4
           SV=1
          Length = 825

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 160 GTQFPNGIVTWTKLYPSQQSSIWHMSYNHRYAMTDEALMGY 282
           G QFPN ++  T+ YP+   + W +  +H + + D    G+
Sbjct: 502 GAQFPNRVIVGTETYPADIDTNWRLVQDHSHVIGDFTWTGW 542