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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917614
Clone id YMU001_000103_B10
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTGGAGATGTTGTTGAGAGCTAGCTACGATTGGAAGAATAGGGATTTGTCTCCAAGGGG
GGCACCTGACTGTCCCTCCCATGTGTGCTTTTTGCCTCTACTTTGTCACACAAATTTTTG
ATGATGGGAGAGGTCACGATTCCCACCTCACTTTGAGGACAAAACTAATGGCTAATTTCT
TTTCGGATGCTGCTTGTTGACAAGAGGGAAGTGGATGGTAACCATGGCTCTATTGGTGGA
AATGGGCGGCTTCATCGGATCTTGATGCATAATGTGGTTGTTGTGGGTGACTGCCTATGG
TCATTCAATGGTGCACGACTCTCCAAAAAAGCATGCTCATGTCCTATTGCTCTAGTTTGT
TGAGGCATTGAGTGGGTACATCCTCCTTGTCCCTTCTTTGATTGTGATGAAACGGTTGGT
CTCCCACCTTATACGATG
■■Homology search results ■■ -
sp_hit_id Q8C963
Definition sp|Q8C963|YS023_MOUSE Coiled-coil domain-containing protein LOC126075 homolog OS=Mus musculus
Align length 31
Score (bit) 30.0
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917614|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_B10.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C963|YS023_MOUSE Coiled-coil domain-containing protein LOC1...    30   4.4  
sp|P23792|DISC_DROME Protein disconnected OS=Drosophila melanoga...    30   4.4  
sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein ho...    29   7.5  
sp|Q08BW0|OTUD5_DANRE OTU domain-containing protein 5 OS=Danio r...    29   7.5  
sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=H...    29   7.5  
sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=H...    29   7.5  
sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=H...    29   7.5  

>sp|Q8C963|YS023_MOUSE Coiled-coil domain-containing protein
           LOC126075 homolog OS=Mus musculus PE=2 SV=1
          Length = 411

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 56  RGAPDCPSHVCFLPLLCHTNF**WERSRFPP 148
           R + DC SH+C  PLL  T++   ERS++ P
Sbjct: 21  RDSDDCVSHLCTPPLLAITSWAAKERSQYSP 51


>sp|P23792|DISC_DROME Protein disconnected OS=Drosophila
           melanogaster GN=disco PE=1 SV=2
          Length = 568

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 313 HH*MTIGSHPQQPHYASRSDEAAHFHQ*SHGYHPLPSCQQAASEKKLAIS 164
           HH +T+  H Q+ H+        H H   H +H     QQ+ +     IS
Sbjct: 518 HHHLTLSHHHQEQHHHLGHHHMGHHHHHHHQHHQQQPQQQSPAATNAPIS 567


>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog
            R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2
          Length = 1348

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -3

Query: 211  LPSCQQAASEKKLAISFVLKVRWES*PLPSSKICVTK*RQKAHMGGT 71
            L  C++ A+E+    +F+L+++W+    PSS  CV   +Q AH+  T
Sbjct: 891  LDFCKERAAEE----NFLLRIKWDQSTKPSS--CVYSHKQHAHLAFT 931


>sp|Q08BW0|OTUD5_DANRE OTU domain-containing protein 5 OS=Danio
           rerio GN=otud5 PE=2 SV=1
          Length = 560

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 298 IGSHPQQPHYASRSDEAAHFHQ*SHGYHP 212
           +  HP  P   + SD   H HQ SHG  P
Sbjct: 15  VSDHPDDPDRRTGSDPHQHQHQHSHGVRP 43


>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii
           GN=HDAC5 PE=2 SV=1
          Length = 1122

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 413 VSSQSKKGQGGCTHSMPQQTRAIGHEHAFLESRAP 309
           +S   +   GG  HS+PQ  +  G  HA L+  +P
Sbjct: 192 LSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSP 226


>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus
           GN=Hdac5 PE=1 SV=2
          Length = 1113

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 413 VSSQSKKGQGGCTHSMPQQTRAIGHEHAFLESRAP 309
           +S   +   GG  HS+PQ  +  G  HA L+  +P
Sbjct: 183 LSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSP 217


>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens
           GN=HDAC5 PE=1 SV=1
          Length = 1122

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 413 VSSQSKKGQGGCTHSMPQQTRAIGHEHAFLESRAP 309
           +S   +   GG  HS+PQ  +  G  HA L+  +P
Sbjct: 192 LSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSP 226
tr_hit_id Q757S4
Definition tr|Q757S4|Q757S4_ASHGO Peptidyl-prolyl cis-trans isomerase OS=Ashbya gossypii
Align length 57
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917614|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_B10.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q757S4|Q757S4_ASHGO Peptidyl-prolyl cis-trans isomerase OS=As...    37   0.49 
tr|A0LVQ9|A0LVQ9_ACIC1 Major facilitator superfamily MFS_1 OS=Ac...    33   5.4  
tr|A4QZY4|A4QZY4_MAGGR Putative uncharacterized protein OS=Magna...    33   7.1  

>tr|Q757S4|Q757S4_ASHGO Peptidyl-prolyl cis-trans isomerase
           OS=Ashbya gossypii GN=AEL062C PE=3 SV=1
          Length = 383

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 178 SFRMLLVDKREVDGNHGSIGGNGRLHRILMHNVVVVGDCLWSFNGA---RLSKKACS 339
           +F+ L     E+DG H S  GN R HR++ + +V  GD ++   GA    L K  CS
Sbjct: 36  NFKQLCCGGIELDGKHVSFRGN-RFHRVIKNFMVQAGDIMYGMEGADEENLGKGGCS 91


>tr|A0LVQ9|A0LVQ9_ACIC1 Major facilitator superfamily MFS_1
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=Acel_1747 PE=3 SV=1
          Length = 449

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +2

Query: 188 CCLLTRGKWMVTMALLVEMGGFIGS*CIMWLLWVTAYGHSMVHDSPKKHAHVLLL*FVEA 367
           C    R  WM+     +  GGF+G        W+ +Y H+M +    + + +L   F  A
Sbjct: 216 CAASRRTTWMLVSGYFISFGGFLG-----LTAWLPSYWHAM-YGLSLRESGILTASF--A 267

Query: 368 LSGYILLVPSLIVMKRLVSHLI 433
            +  +  VP  I+  RL SH +
Sbjct: 268 ATAALARVPGGILADRLASHAV 289


>tr|A4QZY4|A4QZY4_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_02078 PE=4 SV=1
          Length = 440

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 292 SHPQQPHYASRSDEAAHFHQ*SHGYHPLPSCQQAASEKKLAIS-FVLKVRW 143
           SH  + H  + SDE   F    HGYH  P    AA+E K+A++  +LK  W
Sbjct: 385 SHENRTHLVNVSDEHFGF---GHGYHAFPGRFFAANEIKIALAHMLLKYDW 432