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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917615
Clone id YMU001_000103_B12
Library
Length 370
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGGTCCAGCCCTTGGTGTGCACATGCAGGGCCTCCTTCTCTGAAAAAGATTTATGGGTG
TCCCCTTTCCAGTCTAAGTTCAAAAAGCTTGCTCCTATGGATGACCATTTAGTAAGTGGA
GTCTTTGCAAAAGATGAGGAGGAAGCTGCGGTTCTTTTGATGCATCTCTCTTGTGGCCTT
GTGTACTGAGCCCAATGGCATGCTTAAGTCTTTGAGTAGCACCATAACTTGAATGTGGAG
CTTAAGCCAAGTGCATTGTATAATGAAATCAGTGTGCAGGGGATGTTAGATGTAGTTATC
TCGAATTAATGGAAGCAGGCATGCTTTCTGTTAGTCGAGGCTCCTTAGAATCTGGTTGCT
CAGGTGTAAA
■■Homology search results ■■ -
sp_hit_id Q6NXE6
Definition sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens
Align length 65
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917615|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_B12.
         (370 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=H...    35   0.15 
sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=M...    33   0.44 
sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsi...    32   1.3  
sp|Q9SZI6|GAT20_ARATH Putative GATA transcription factor 20 OS=A...    31   2.2  
sp|O14081|TPSX_SCHPO Putative alpha,alpha-trehalose-phosphate sy...    30   4.9  
sp|Q6CWM4|BRE1_KLULA E3 ubiquitin-protein ligase BRE1 OS=Kluyver...    29   8.3  

>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo
           sapiens GN=ARMC6 PE=1 SV=2
          Length = 501

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 327 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 148
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 218 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 274

Query: 147 SFLLI 133
              ++
Sbjct: 275 GLKVL 279


>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus
           musculus GN=Armc6 PE=2 SV=1
          Length = 468

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -2

Query: 327 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 148
           KA +LPL+      H  H D + +  W    ++VM    D+ +P G  H+  + + Q+N+
Sbjct: 193 KAGVLPLLTAAITQHGQHADVVREACWA---LRVMTFDDDIRVPFGHAHEHAKMIVQENK 249

Query: 147 SFLLI 133
              ++
Sbjct: 250 GLKVL 254


>sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis
           thaliana GN=At5g56860 PE=2 SV=2
          Length = 398

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 121 VFAKDEEEAAVLLMHLSCGLVY 186
           VF +DE+EAAVLLM LS G+V+
Sbjct: 376 VFPQDEKEAAVLLMALSYGMVH 397


>sp|Q9SZI6|GAT20_ARATH Putative GATA transcription factor 20
           OS=Arabidopsis thaliana GN=At4g26150 PE=2 SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 121 VFAKDEEEAAVLLMHLSCGLVY 186
           VF +DE+EAA+LLM LS G+V+
Sbjct: 330 VFPQDEKEAAILLMALSHGMVH 351


>sp|O14081|TPSX_SCHPO Putative alpha,alpha-trehalose-phosphate
           synthase [UDP-forming] 106 kDa subunit
           OS=Schizosaccharomyces pombe GN=SPACUNK4.16c PE=1 SV=1
          Length = 944

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = -3

Query: 224 WCYSKT*ACHWAQYTRPQERCIKRTAASSSSFAKTPLTKWSSIGASFLNLDWK 66
           W YSKT        T  +E C KR  A  +   +     W+    S +   WK
Sbjct: 603 WDYSKTAEAFRTALTMSEEECQKRNKAMCNLILRHDAASWAVTFQSLIKESWK 655


>sp|Q6CWM4|BRE1_KLULA E3 ubiquitin-protein ligase BRE1
           OS=Kluyveromyces lactis GN=BRE1 PE=3 SV=1
          Length = 663

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 191 AQYTRPQERCIKRTAASSSSFAKTPLTKWSSIGASFLNLDWKGDTHKSFSEKEA 30
           AQY R     + R   ++   +     K SS GAS +N +   ++ KS S KE+
Sbjct: 167 AQYDRQDSESVSRVFNTADDDSNVKKEKQSSTGASSVNDESNDNSDKSQSNKES 220
tr_hit_id B8LRB8
Definition tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 43
Score (bit) 41.6
E-value 0.02
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917615|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_B12.
         (370 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea...    42   0.020
tr|A9RDP7|A9RDP7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|A5B2U8|A5B2U8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.37 
tr|A9T5B9|A9T5B9_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|A9SUP4|A9SUP4_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  
tr|Q68CW5|Q68CW5_HUMAN Putative uncharacterized protein DKFZp762...    35   2.4  
tr|B4E1N1|B4E1N1_HUMAN cDNA FLJ50945, highly similar to Armadill...    35   2.4  
tr|B6WX64|B6WX64_9DELT Putative uncharacterized protein OS=Desul...    35   2.4  
tr|B2RYL4|B2RYL4_RAT Armc6 protein (RCG38798, isoform CRA_a) OS=...    34   3.2  
tr|A9SUP3|A9SUP3_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|A6ETL8|A6ETL8_9BACT Aminopeptidase OS=unidentified eubacteriu...    33   7.1  
tr|Q0U0G1|Q0U0G1_PHANO DNA topoisomerase OS=Phaeosphaeria nodoru...    33   9.3  

>tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 380

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 8/43 (18%)
 Frame = +1

Query: 82  KKLAPMDDHLVSG--------VFAKDEEEAAVLLMHLSCGLVY 186
           KK  P   HL +         VFA+DEEEAAVLLM LSCGLV+
Sbjct: 337 KKFVPSPIHLETNSSHSAFQRVFAQDEEEAAVLLMALSCGLVH 379


>tr|A9RDP7|A9RDP7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64713 PE=4 SV=1
          Length = 558

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 13  LVCTCRASFSEKDLWVSPF-QSKFKKLAPMDDHLVSGVFAKDEEEAAVLLMHLSCGLV 183
           L  T   S  ++D   SP  +S+ K+L     +L  G F+ DEEE AVLLM LSCG+V
Sbjct: 504 LFATSPKSTLQQDFRASPVSRSQVKEL-----NLQMGSFSSDEEEGAVLLMALSCGMV 556


>tr|A5B2U8|A5B2U8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032017 PE=4 SV=1
          Length = 211

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +1

Query: 121 VFAKDEEEAAVLLMHLSCGLVY 186
           VF +DEEEAA+LLM LSC LVY
Sbjct: 189 VFPRDEEEAAILLMALSCDLVY 210


>tr|A9T5B9|A9T5B9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_140427 PE=4 SV=1
          Length = 202

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 10  PLVCTCRASFSEKDLWVSPFQSKFKKLAPMDDHLVSGVFAKDEEEAAVLLMHLSCGLV 183
           PL  +   S   +D   SP      ++   + ++  G F+ DEEE AVLLM LSCG+V
Sbjct: 147 PLFASSPKSTLHRDFRASPVV----RIQDKELNMHVGSFSSDEEEGAVLLMALSCGMV 200


>tr|A9SUP4|A9SUP4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166660 PE=4 SV=1
          Length = 417

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
 Frame = +1

Query: 61  SPFQSKFKKLAPMDDHLVS---GVFAKDEEEAAVLLMHLSCGLV 183
           SP +S   +LA   ++ ++   G ++ DEEE AVLLM LSCG+V
Sbjct: 372 SPKRSPGSRLASDHENKLNMQFGSYSSDEEEGAVLLMALSCGVV 415


>tr|Q68CW5|Q68CW5_HUMAN Putative uncharacterized protein
           DKFZp762A1314 (Fragment) OS=Homo sapiens
           GN=DKFZp762A1314 PE=2 SV=1
          Length = 443

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 327 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 148
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 106 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 162

Query: 147 SFLLI 133
              ++
Sbjct: 163 GLKVL 167


>tr|B4E1N1|B4E1N1_HUMAN cDNA FLJ50945, highly similar to Armadillo
           repeat-containing protein 6 OS=Homo sapiens PE=2 SV=1
          Length = 408

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 327 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 148
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 125 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 181

Query: 147 SFLLI 133
              ++
Sbjct: 182 GLKVL 186


>tr|B6WX64|B6WX64_9DELT Putative uncharacterized protein
           OS=Desulfovibrio piger ATCC 29098 GN=DESPIG_02690 PE=4
           SV=1
          Length = 474

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = -3

Query: 287 NIPCTLISLYNALGLSSTFKLWCYSKT*ACHW------AQYTRPQERCIKRTAASSSSFA 126
           N+PC  + +Y  LGL     + C   T  C+W      A Y R + RC K        F 
Sbjct: 175 NVPCNYVLIYGKLGLPQLGAVGCGVATALCYWFMGLTLALYARREARCRK----LGPLFL 230

Query: 125 KTPLTKWSSIGASFLNLDW 69
              L + +  G     +DW
Sbjct: 231 PLLLPRTAGEGVEARRVDW 249


>tr|B2RYL4|B2RYL4_RAT Armc6 protein (RCG38798, isoform CRA_a)
           OS=Rattus norvegicus GN=Armc6 PE=2 SV=1
          Length = 468

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 327 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 148
           KA +LPL+      H  H D + +  W    ++VM    D+ +P G  H+  + + Q+NR
Sbjct: 193 KAGVLPLLTAAITQHGQHADVVREACWA---LRVMTFDDDIRVPFGHAHEHAKMIVQENR 249

Query: 147 SFLLI 133
              ++
Sbjct: 250 GLKVL 254


>tr|A9SUP3|A9SUP3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_135573 PE=4 SV=1
          Length = 173

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 124 FAKDEEEAAVLLMHLSCGLVY 186
           F+ DEEE A LLM LSCG+VY
Sbjct: 152 FSTDEEEGAELLMALSCGMVY 172