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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917635
Clone id YMU001_000103_E02
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGTGGTGCTTGCGTTTCCTCCTTTTTGTTTATAACTTCCTTGCCACCGTTCCATTCTTT
GTCCAAGGTTGGCTTATTCTTGTGAATGACCGATTCATGCTCCAACAAAATTCCTTCTTG
ATCATCAATAACAGGCAATTGTGCAAGCCCTCCATTATTAGTTATTCTTCTGCTATCTAG
GGGCTAAGCATCAGCTGCTGCCTCCAATAGACAGATCTCTGATTGATGCACCCTTTTTCC
AAAGGTATGCTCCACAACATTGCCATCCTTTGGGCCCTGTTTTAGAGAGCTTTTAAGTCC
ACTTGAGGTCCCCTTTGAAGTTAACTTCTTCTTGCGCCGCTTCAGATACTCGTCGAGACA
CTTTTTTTGCCAATCACGCAGTGGAACATCTGACGTATGAGTGAGCACATTGACCGCATC
TGAAATGTCACAATGCAGTTTTGTGACTGAGTCACCACGTCCAAGCTCCTTTTCCATACC
■■Homology search results ■■ -
sp_hit_id Q8N393
Definition sp|Q8N393|ZN786_HUMAN Zinc finger protein 786 OS=Homo sapiens
Align length 64
Score (bit) 29.6
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917635|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_E02.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N393|ZN786_HUMAN Zinc finger protein 786 OS=Homo sapiens GN...    30   7.4  
sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM...    29   9.6  
sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane pr...    29   9.6  
sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM...    29   9.6  

>sp|Q8N393|ZN786_HUMAN Zinc finger protein 786 OS=Homo sapiens
           GN=ZNF786 PE=2 SV=1
          Length = 782

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 427 HFRCGQCAHSYVR--CSTA*LAKKVSRRVSEAAQEEVNFKGDLKW-T*KLSKTGPKGWQC 257
           HFRCG C  S+ R  C    LA    R     A  E+ F+ +L   + +L + G K  QC
Sbjct: 239 HFRCGVCGKSFRRKLCLLRHLAAHTGRGPFRNADGEMCFRHELTHPSHRLPQQGEKPAQC 298

Query: 256 --CG 251
             CG
Sbjct: 299 TPCG 302


>sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM
           121C OS=Homo sapiens GN=POM121C PE=1 SV=2
          Length = 1229

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 PKVCSTTLPSFGPCFRELLSPLEVPFEVNFF 331
           P   STT P+F P F  +  P  VP    FF
Sbjct: 738 PTTTSTTAPTFQPVFSSMGPPASVPLPAPFF 768


>sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane
           protein POM 121B OS=Homo sapiens GN=POM121B PE=5 SV=2
          Length = 834

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 PKVCSTTLPSFGPCFRELLSPLEVPFEVNFF 331
           P   STT P+F P F  +  P  VP    FF
Sbjct: 345 PTTTSTTAPTFQPVFSSMGPPASVPLPAPFF 375


>sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM
           121 OS=Homo sapiens GN=POM121 PE=1 SV=2
          Length = 1249

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 PKVCSTTLPSFGPCFRELLSPLEVPFEVNFF 331
           P   STT P+F P F  +  P  VP    FF
Sbjct: 761 PTTTSTTAPTFQPVFSSMGPPASVPLPAPFF 791
tr_hit_id O82022
Definition tr|O82022|O82022_MEDTR ENBP1 protein OS=Medicago truncatula
Align length 42
Score (bit) 63.9
E-value 4.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917635|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_E02.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O82022|O82022_MEDTR ENBP1 protein OS=Medicago truncatula GN=E...    64   4e-09
tr|A7QWE7|A7QWE7_VITVI Chromosome undetermined scaffold_203, who...    64   5e-09
tr|A7QUK3|A7QUK3_VITVI Chromosome chr10 scaffold_179, whole geno...    62   1e-08
tr|A5AE68|A5AE68_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|Q6K7P0|Q6K7P0_ORYSJ Os02g0828900 protein OS=Oryza sativa subs...    62   2e-08
tr|Q6K7N9|Q6K7N9_ORYSJ Putative DNA-binding protein PD3, chlorop...    62   2e-08
tr|B8AF76|B8AF76_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|A3ACY6|A3ACY6_ORYSJ Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|Q41700|Q41700_VICSA ENBP1 protein OS=Vicia sativa GN=ENBP1 PE...    61   2e-08
tr|O04698|O04698_PEA Chloroplast DNA-binding protein PD3 OS=Pisu...    61   2e-08
tr|Q9SSE9|Q9SSE9_ARATH MLP3.6 protein OS=Arabidopsis thaliana GN...    60   5e-08
tr|O48794|O48794_ARATH F24O1.3 OS=Arabidopsis thaliana PE=4 SV=1       60   7e-08
tr|O65384|O65384_ARATH F12F1.18 protein OS=Arabidopsis thaliana ...    59   9e-08
tr|A7QF33|A7QF33_VITVI Chromosome chr16 scaffold_86, whole genom...    59   9e-08
tr|A5BYR6|A5BYR6_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A7Q7J4|A7Q7J4_VITVI Chromosome undetermined scaffold_60, whol...    59   1e-07
tr|A7PTL4|A7PTL4_VITVI Chromosome undetermined scaffold_30, whol...    59   1e-07
tr|Q9SV29|Q9SV29_ARATH Putative uncharacterized protein AT4g0099...    57   3e-07
tr|Q8VYB9|Q8VYB9_ARATH Putative uncharacterized protein At4g0099...    57   3e-07
tr|Q6H405|Q6H405_ORYSJ Os09g0393200 protein OS=Oryza sativa subs...    57   6e-07
tr|A9U2N6|A9U2N6_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|A3BYI7|A3BYI7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A2Z0Y6|A2Z0Y6_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A9RSS8|A9RSS8_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   8e-07
tr|Q6AUV7|Q6AUV7_ORYSJ JmjC domain containing protein OS=Oryza s...    55   1e-06
tr|Q10J83|Q10J83_ORYSJ JmjC domain containing protein, expressed...    55   1e-06
tr|Q10J82|Q10J82_ORYSJ JmjC domain containing protein, expressed...    55   1e-06
tr|Q0DR01|Q0DR01_ORYSJ Os03g0430400 protein (Fragment) OS=Oryza ...    55   1e-06
tr|B8AKE7|B8AKE7_ORYSI Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|A3AJC9|A3AJC9_ORYSJ Putative uncharacterized protein OS=Oryza...    55   1e-06

>tr|O82022|O82022_MEDTR ENBP1 protein OS=Medicago truncatula GN=ENBP1
            PE=4 SV=1
          Length = 1701

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = -1

Query: 480  GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQKKCL 355
            G  +EL RGDSVTKLHCDISDAVN+LTHT+DV    WQ K +
Sbjct: 1308 GALEELSRGDSVTKLHCDISDAVNILTHTADVKTPAWQSKII 1349


>tr|A7QWE7|A7QWE7_VITVI Chromosome undetermined scaffold_203, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008625001 PE=4 SV=1
          Length = 782

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQKK 361
           G   ELGRGDSVTKLHCD+SDAVNVLTHT+ V +  WQ K
Sbjct: 447 GFPLELGRGDSVTKLHCDMSDAVNVLTHTAKVKVAPWQHK 486


>tr|A7QUK3|A7QUK3_VITVI Chromosome chr10 scaffold_179, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006884001
           PE=4 SV=1
          Length = 695

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQK 364
           G+ +ELGRGDSVTKLHCD+SDAVN+LTHT++V L D Q+
Sbjct: 445 GIAEELGRGDSVTKLHCDMSDAVNILTHTAEVVLDDNQR 483


>tr|A5AE68|A5AE68_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038746 PE=4 SV=1
          Length = 1016

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQK 364
           G+ +ELGRGDSVTKLHCD+SDAVN+LTHT++V L D Q+
Sbjct: 774 GIAEELGRGDSVTKLHCDMSDAVNILTHTAEVVLDDNQR 812


>tr|Q6K7P0|Q6K7P0_ORYSJ Os02g0828900 protein OS=Oryza sativa subsp.
           japonica GN=P0452F04.49-1 PE=4 SV=1
          Length = 995

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVP 382
           G  +ELGRGDSVTKLHCD+SDAVN+LTHT++VP
Sbjct: 648 GFSEELGRGDSVTKLHCDMSDAVNILTHTAEVP 680


>tr|Q6K7N9|Q6K7N9_ORYSJ Putative DNA-binding protein PD3,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0452F04.49-2 PE=4 SV=1
          Length = 868

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVP 382
           G  +ELGRGDSVTKLHCD+SDAVN+LTHT++VP
Sbjct: 521 GFSEELGRGDSVTKLHCDMSDAVNILTHTAEVP 553


>tr|B8AF76|B8AF76_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09545 PE=4 SV=1
          Length = 996

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVP 382
           G  +ELGRGDSVTKLHCD+SDAVN+LTHT++VP
Sbjct: 649 GFSEELGRGDSVTKLHCDMSDAVNILTHTAEVP 681


>tr|A3ACY6|A3ACY6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008658 PE=4 SV=1
          Length = 917

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = -1

Query: 480 GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVP 382
           G  +ELGRGDSVTKLHCD+SDAVN+LTHT++VP
Sbjct: 562 GFSEELGRGDSVTKLHCDMSDAVNILTHTAEVP 594


>tr|Q41700|Q41700_VICSA ENBP1 protein OS=Vicia sativa GN=ENBP1 PE=2
            SV=1
          Length = 1641

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 27/42 (64%), Positives = 32/42 (76%)
 Frame = -1

Query: 480  GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQKKCL 355
            G   EL RGDSVTKLHCDISDAVN+LTHT++V    WQ + +
Sbjct: 1252 GTSDELSRGDSVTKLHCDISDAVNILTHTAEVKPPPWQSRII 1293


>tr|O04698|O04698_PEA Chloroplast DNA-binding protein PD3 OS=Pisum
            sativum PE=2 SV=1
          Length = 1629

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 27/42 (64%), Positives = 32/42 (76%)
 Frame = -1

Query: 480  GMEKELGRGDSVTKLHCDISDAVNVLTHTSDVPLRDWQKKCL 355
            G   EL RGDSVTKLHCDISDAVN+LTHT++V    WQ + +
Sbjct: 1241 GTSDELSRGDSVTKLHCDISDAVNILTHTAEVKPPPWQSRII 1282