BP917638 |
Clone id |
YMU001_000103_E09 |
Library |
YMU01 |
Length |
470 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000103_E09. |
Accession |
BP917638 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL558Contig1 |
Sequence |
CTGGAAGAATTCGCGGCCGCGAATTTCAATCTTTTGCAATCTAGAACACCATGAAACAGC ACCTCCCGCAAGAGTAAATACATAGCCACTTGTGGATTTCTGTGTATCCACATCACCAGC CATGTCAGAGTCACAAATTCCCTTCAACTCCATTGGTCCATTACCATAGCAGAGGCATTT GTTTTTAGTCCCTTTCAAGTACCTCATAATGGACTTTACTGCATCCCAATGCAACCTGCC TGGATTAGCCATAAACCGGCTCACAACTCCCACTACATGGGCTATGTCAAGCCTAGTAGC AACCATAGCATACATAAGTGAACCACAAGCTGAAGCATAAGGCACACTTTGCATGTCATT GGCTTCTTCCTTTGACTTGGGACAATCATCCTTGGAGATTTGAACATATGGCTGTAATGG CACACCAAGAGGCTTTGCTTCAGCCATGTTAAATCTGTCCAGCACCTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
146 |
Score (bit) |
188.0 |
E-value |
1.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917638|Adiantum capillus-veneris mRNA, clone: YMU001_000103_E09. (445 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 188 1e-47 sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W O... 73 6e-13 sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 71 2e-12 sp|P92519|M810_ARATH Uncharacterized mitochondrial protein AtMg0... 70 5e-12 sp|P93290|M240_ARATH Uncharacterized mitochondrial protein AtMg0... 44 3e-04 sp|O83676|DDL_TREPA D-alanine--D-alanine ligase OS=Treponema pal... 31 2.0 sp|A0PLD8|Y450_MYCUA Putative S-adenosyl-L-methionine-dependent ... 30 3.4 sp|A2ADZ8|IQCC_MOUSE IQ domain-containing protein C OS=Mus muscu... 30 4.5 sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Creb... 30 4.5 sp|Q92793|CBP_HUMAN CREB-binding protein OS=Homo sapiens GN=CREB... 30 4.5 sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protei... 29 7.7 sp|Q5REA7|FADS2_PONAB Fatty acid desaturase 2 OS=Pongo abelii GN... 29 7.7 sp|Q2QRX6|DRTS_ORYSJ Putative bifunctional dihydrofolate reducta... 29 7.7 sp|P56593|CP2AC_MOUSE Cytochrome P450 2A12 OS=Mus musculus GN=Cy... 29 7.7 sp|Q4R749|FADS2_MACFA Fatty acid desaturase 2 OS=Macaca fascicul... 29 10.0 sp|O95864|FADS2_HUMAN Fatty acid desaturase 2 OS=Homo sapiens GN... 29 10.0 sp|Q9JT70|DHPS_NEIMA Dihydropteroate synthase OS=Neisseria menin... 29 10.0 sp|P24455|CP2A9_MESAU Cytochrome P450 2A9 OS=Mesocricetus auratu... 29 10.0 sp|P11711|CP2A1_RAT Cytochrome P450 2A1 OS=Rattus norvegicus GN=... 29 10.0
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 Length = 1328
Score = 188 bits (477), Expect = 1e-47 Identities = 87/146 (59%), Positives = 112/146 (76%) Frame = -3
Query: 443 KVLDRFNMAEAKPLGVPLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMVATRL 264 +VL+RFNM AKP+ PL ++++SK CP + EE +M VPY+SA GSLMYAMV TR Sbjct: 1068 RVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRP 1127
Query: 263 DIAHVVGVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCLCYGNGPMELKGICDSDMAGDV 84 DIAH VGVVSRF+ NPG+ HW+AVK I+RYL+GT CLC+G LKG D+DMAGD+ Sbjct: 1128 DIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDI 1187
Query: 83 DTQKSTSGYVFTLAGGAVSWCSRLQK 6 D +KS++GY+FT +GGA+SW S+LQK Sbjct: 1188 DNRKSSTGYLFTFSGGAISWQSKLQK 1213
>sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2 Length = 308
Score = 72.8 bits (177), Expect = 6e-13 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 1/105 (0%) Frame = -3
Query: 317 PYASACGSLMYAMVATRLDIAHVVGVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCLCYG 138 PY S G L++ R DI++ V ++SRF+ P +H ++ + ++RYL T++ CL Y Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241
Query: 137 NG-PMELKGICDSDMAGDVDTQKSTSGYVFTLAGGAVSWCSRLQK 6 +G + L CD+ D ST GYV LAG V+W S+ K Sbjct: 242 SGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLK 286
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 70.9 bits (172), Expect = 2e-12 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Frame = -3
Query: 443 KVLDRFNMAEAKPLGVPLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMVATRL 264 K+L +FNM + PL + + S E+ N P S G LMY M+ TR Sbjct: 1145 KILSKFNMENCNAVSTPLPSKINY---ELLNSDEDCN----TPCRSLIGCLMYIMLCTRP 1197
Query: 263 DIAHVVGVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCLCYGNG---PMELKGICDSDMA 93 D+ V ++SR+ + W +K ++RYLKGT + L + ++ G DSD A Sbjct: 1198 DLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWA 1257
Query: 92 GDVDTQKSTSGYVFTL 45 G +KST+GY+F + Sbjct: 1258 GSEIDRKSTTGYLFKM 1273
>sp|P92519|M810_ARATH Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1 Length = 240
Score = 69.7 bits (169), Expect = 5e-12 Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Frame = -3
Query: 443 KVLDRFNMAEAKPLGVPLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMVATRL 264 ++L+ M + KP+ PL ++++ + +D +S+ G+L Y + TR Sbjct: 64 QILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSI-----VGALQY-LTLTRP 115
Query: 263 DIAHVVGVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCL-CYGNGPMELKGICDSDMAGD 87 DI++ V +V + M P +D +K ++RY+KGT L + N + ++ CDSD AG Sbjct: 116 DISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGC 175
Query: 86 VDTQKSTSGYVFTLAGGAVSWCSRLQ 9 T++ST+G+ L +SW ++ Q Sbjct: 176 TSTRRSTTGFCTFLGCNIISWSAKRQ 201
>sp|P93290|M240_ARATH Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg00240 PE=4 SV=1 Length = 111
Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = -3
Query: 281 MVATRLDIAHVVGVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCLCYG-NGPMELKGICD 105 + TR D+ V +S+F + AV ++ Y+KGT + L Y ++LK D Sbjct: 3 LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62
Query: 104 SDMAGDVDTQKSTSGY 57 SD A DT++S +G+ Sbjct: 63 SDWASCPDTRRSVTGF 78
>sp|O83676|DDL_TREPA D-alanine--D-alanine ligase OS=Treponema pallidum GN=ddl PE=3 SV=1 Length = 396
Score = 31.2 bits (69), Expect = 2.0 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Frame = -3
Query: 401 GVPLQPYVQISKDDCPKSKEE-ANDMQS-------VPYASACGSLMYAMVATRLDIAHVV 246 G+P+ P+V KD +E +++ V A A S+ + V TR + + Sbjct: 148 GLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLFVKPAQAGSSVGASAVQTRAPLIPAI 207
Query: 245 GVVSRFMANPGRLHWDAVKSIMRYLKGTKNKCLCYGNGPMELKGICDSDMAGDVDTQKST 66 WD V + RY++ + +C GNGP + G AG+V Q + Sbjct: 208 EAA---------FQWDEVVLVERYVRAREIECALSGNGPYTVHG------AGEVIAQGAF 252
Query: 65 SGYVFTLAGGAVS 27 Y A +V+ Sbjct: 253 YDYEEKYADASVA 265
>sp|A0PLD8|Y450_MYCUA Putative S-adenosyl-L-methionine-dependent methyltransferase MUL_0450 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_0450 PE=3 SV=1 Length = 301
Score = 30.4 bits (67), Expect = 3.4 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Frame = -3
Query: 413 AKPL--GVPLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMV---ATRLDIAHV 249 A PL V + Y ++ P E D +P A AC + Y ATR I+ V Sbjct: 42 AAPLVRAVDIDVYTRLVNGQIPVDVESGFDPARMPEAMACRTRFYDQFFVDATRSGISQV 101
Query: 248 VGVVSRFMANPGRLHWDA 195 V + S A RL W A Sbjct: 102 VILASGLDARAYRLGWPA 119
>sp|A2ADZ8|IQCC_MOUSE IQ domain-containing protein C OS=Mus musculus GN=Iqcc PE=2 SV=1 Length = 418
Score = 30.0 bits (66), Expect = 4.5 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = -3
Query: 224 ANPGRL----HWDAVKSIMRYLKGTKNKCLCYGNGPMELKGICDSDMAGDVDTQKSTSG 60 ++ GRL H D+V S + G+K + LCY N +L +S GD T+ G Sbjct: 236 SHKGRLKPQKHPDSVTSAGKTTAGSKGRELCYRNSASQLPAALESQAGGDRVTKGPDHG 294
>sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=2 Length = 2441
Score = 30.0 bits (66), Expect = 4.5 Identities = 17/53 (32%), Positives = 21/53 (39%) Frame = -3
Query: 395 PLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMVATRLDIAHVVGVV 237 P QP ISKD K K + D + CG M+ + DI G V Sbjct: 1256 PSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFV 1308
>sp|Q92793|CBP_HUMAN CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3 Length = 2442
Score = 30.0 bits (66), Expect = 4.5 Identities = 17/53 (32%), Positives = 21/53 (39%) Frame = -3
Query: 395 PLQPYVQISKDDCPKSKEEANDMQSVPYASACGSLMYAMVATRLDIAHVVGVV 237 P QP ISKD K K + D + CG M+ + DI G V Sbjct: 1255 PSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFV 1307
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5MG99 |
Definition |
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas |
Align length |
146 |
Score (bit) |
197.0 |
E-value |
3.0e-49 |
Report |
|