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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917642
Clone id YMU001_000103_F01
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGAAGAATTGCAGCCCAGGCGCCACAAAGTAAGATATTACCCCTGGATGCAAGAAAGAT
CTAATATACCAAGCAGTAACTAGAAGCACCTGGCTCACAATCAAAGTTCTACCAGCAATG
GCCAAGTACAAAAATGACCAATGGCAGCTTCAAACTGGTAGACTGGCTCAAATTGCTGCT
GCAGGCATACATCAATGCTAACCAGAAATCCGAGGTAAAGATGGTTTCACTTGGTGCATA
GCATACTTCATCCACACCCAACAAAAAGCAGCGCAGCTTGTAATGAACCGCCTCTGAATA
TAGGACCCCCCTTTGCACTCTGTCGCTCCACGAGTATGAACATCCAATCCGCGATATTCC
GAGAACTGCTTCCGAGACTCATCTCCAAGGACAAGATCCCGTACAATGAGCTTGGAAAGC
AAAGCACACATCTGCAGCTCTGGATTAAGCATACCCAATTCTCCATCTTCCCGGGGCACA
ATACCCCTGAATGCTGCATCCATAGAGATGCAGTATACAAAGCAGAAGCTAGAA
■■Homology search results ■■ -
sp_hit_id O95602
Definition sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens
Align length 44
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917642|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F01.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 ...    31   3.3  
sp|Q9UL54|TAOK2_HUMAN Serine/threonine-protein kinase TAO2 OS=Ho...    30   9.5  

>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1
           OS=Homo sapiens GN=POLR1A PE=1 SV=2
          Length = 1720

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 366 LLPRLISKDKIPYNELGKQSTHLQLWIKHTQFSIFPGHNTPECC 497
           LL  +I +D IP N  GK     + W+K T  S+ PG N    C
Sbjct: 691 LLINIIPEDHIPLNLSGKAKITGKAWVKETPRSV-PGFNPDSMC 733


>sp|Q9UL54|TAOK2_HUMAN Serine/threonine-protein kinase TAO2 OS=Homo
            sapiens GN=TAOK2 PE=1 SV=2
          Length = 1235

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
 Frame = -3

Query: 421  CFPSSLYGILS------LEMSLGSSSRNIADWMFILVERQSAKGGPIFRGGSLQAALL-- 266
            C  S L G+LS      L  ++GSSS  +   + +L+   +A+G     GG LQAALL  
Sbjct: 938  CPASQLPGLLSHGLLAGLSFAVGSSSGLLPLLLLLLLPLLAAQG-----GGGLQAALLAL 992

Query: 265  ---FVGCG*S--MLCT 233
                VG G S  +LCT
Sbjct: 993  EVGLVGLGASYLLLCT 1008
tr_hit_id A2QRT5
Definition tr|A2QRT5|A2QRT5_ASPNC Putative uncharacterized protein OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 50
Score (bit) 34.3
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917642|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F01.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2QRT5|A2QRT5_ASPNC Putative uncharacterized protein OS=Asper...    34   4.2  
tr|A9SSE4|A9SSE4_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.4  
tr|B6F4T4|B6F4T4_LIBAS Valyl-tRNA synthetase OS=Candidatus Liber...    33   7.0  
tr|A9TB40|A9TB40_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.2  

>tr|A2QRT5|A2QRT5_ASPNC Putative uncharacterized protein
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An08g07160 PE=3 SV=1
          Length = 208

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = -1

Query: 480 CAPGRWRIGYA*SRAADVCFAFQAHCTGSCPWR*VSEAVLGISRIGCSYS 331
           C PG  R+G    R A    +F     GSCP R     V G+S IGCS+S
Sbjct: 162 CIPGIGRVGL---RFAGRSLSFWILWIGSCPHRLSCRTVPGLSLIGCSHS 208


>tr|A9SSE4|A9SSE4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230851 PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -2

Query: 482 IVPREDGELGMLNPELQMCALLSKLIVRDLVLGDESRKQFSEYR 351
           I+P + G + +L+PE Q+ AL++KL+VR L+ G    K   ++R
Sbjct: 46  ILPHKLGGIKLLDPETQIHALMAKLLVRSLLPGFVPWKTLMQHR 89


>tr|B6F4T4|B6F4T4_LIBAS Valyl-tRNA synthetase OS=Candidatus
           Liberibacter asiaticus str. psy62 GN=valS PE=4 SV=1
          Length = 947

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -2

Query: 464 GELGMLNPELQMCALLSKLIVRDLVLGDESRKQFSEYRGLD 342
           G + +L PE ++    ++  + ++VL DE+R  FSE+ GLD
Sbjct: 314 GFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLD 354


>tr|A9TB40|A9TB40_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90441 PE=4 SV=1
          Length = 263

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = -2

Query: 464 GELGMLNPELQMCALLSKLIVRDLVLGDES--RKQFSEYRG 348
           G L +L+PELQM ALL++L+V  L+LG  S  R +F  + G
Sbjct: 40  GGLKLLDPELQMQALLTQLLVSGLLLGIASCQRIRFRPFGG 80