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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917645
Clone id YMU001_000103_F07
Library
Length 238
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTACAAAATGCTCCTACTAAGTCACATGGACTGTTCTTTTAGACCTGTCAAGGGTTGTGC
CTCTTGACTCTCCCTCCTCACATGGCCCCAAAATTTCTGCATACAACATTCAGAACATCG
GCTTATTAGCCAAAACGTGGAGTCCGTTTGCACCATCCTTGTTAACCTTTTGGTCTATAG
ACATGCATCTGCATAGATGCTACTCATGCGTACATAAGCAACACCATCCTTGTCATCC
■■Homology search results ■■ -
sp_hit_id Q80YF9
Definition sp|Q80YF9|TCGAP_MOUSE TC10/CDC42 GTPase-activating protein OS=Mus musculus
Align length 67
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917645|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F07.
         (238 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80YF9|TCGAP_MOUSE TC10/CDC42 GTPase-activating protein OS=Mu...    32   0.76 
sp|O14559|TCGAP_HUMAN TC10/CDC42 GTPase-activating protein OS=Ho...    32   0.76 
sp|Q9TU31|PTH1R_CANFA Parathyroid hormone/parathyroid hormone-re...    32   0.76 
sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid hormone-re...    31   2.2  
sp|P50133|PTH1R_PIG Parathyroid hormone/parathyroid hormone-rela...    31   2.2  
sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid hormone-re...    31   2.2  
sp|Q1LZF7|PTH1R_BOVIN Parathyroid hormone/parathyroid hormone-re...    31   2.2  
sp|P25961|PTH1R_RAT Parathyroid hormone/parathyroid hormone-rela...    30   2.9  
sp|Q54EY4|DST3_DICDI Serine/threonine-protein kinase dst3 OS=Dic...    29   6.4  

>sp|Q80YF9|TCGAP_MOUSE TC10/CDC42 GTPase-activating protein OS=Mus
           musculus GN=Snx26 PE=1 SV=1
          Length = 1305

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +3

Query: 39  LDLSRVVPLDSPSSHGPKISAYNIQNIGLLA----KTWSPFAPSLLTFWSIDMHLHRC-- 200
           +D   +  L SP   GP +S  N    G+      ++W P   S   F S+D HLHRC  
Sbjct: 81  VDFGHIQLLLSPEREGPSLSGENELVFGVQVTCQGRSW-PVLRSYDDFRSLDAHLHRCIF 139

Query: 201 ---YSCV 212
              +SC+
Sbjct: 140 DRRFSCL 146


>sp|O14559|TCGAP_HUMAN TC10/CDC42 GTPase-activating protein OS=Homo
           sapiens GN=SNX26 PE=1 SV=2
          Length = 1287

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +3

Query: 39  LDLSRVVPLDSPSSHGPKISAYNIQNIGLLA----KTWSPFAPSLLTFWSIDMHLHRC-- 200
           +D   +  L SP   GP +S  N    G+      ++W P   S   F S+D HLHRC  
Sbjct: 57  VDFGHIQLLLSPDREGPSLSGENELVFGVQVTCQGRSW-PVLRSYDDFRSLDAHLHRCIF 115

Query: 201 ---YSCV 212
              +SC+
Sbjct: 116 DRRFSCL 122


>sp|Q9TU31|PTH1R_CANFA Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Canis familiaris
           GN=PTH1R PE=2 SV=1
          Length = 595

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSLL 164
           WT+ LD  R     S S S+GP +S  ++ N+G  A    P +P LL
Sbjct: 476 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRAGLGLPLSPRLL 522


>sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Pongo abelii
           GN=PTH1R PE=2 SV=1
          Length = 594

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSLL 164
           WT+ LD  R     S S S+GP +S  ++ N+G       P +P LL
Sbjct: 478 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLL 524


>sp|P50133|PTH1R_PIG Parathyroid hormone/parathyroid hormone-related
           peptide receptor OS=Sus scrofa GN=PTH1R PE=2 SV=1
          Length = 585

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSLL 164
           WT+ LD  R     S S S+GP +S  ++ N+G       P +P LL
Sbjct: 472 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRTGLGLPLSPRLL 518


>sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Homo sapiens
           GN=PTH1R PE=1 SV=1
          Length = 593

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSLL 164
           WT+ LD  R     S S S+GP +S  ++ N+G       P +P LL
Sbjct: 477 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLL 523


>sp|Q1LZF7|PTH1R_BOVIN Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Bos taurus GN=PTH1R
           PE=2 SV=1
          Length = 589

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSLL 164
           WT+ LD  R     S S S+GP +S  ++ N+G       P +P LL
Sbjct: 476 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRTGLGLPLSPRLL 522


>sp|P25961|PTH1R_RAT Parathyroid hormone/parathyroid hormone-related
           peptide receptor OS=Rattus norvegicus GN=Pth1r PE=2 SV=1
          Length = 591

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 27  WTVLLDLSRVVPLDSPS-SHGPKISAYNIQNIGLLAKTWSPFAPSL 161
           WT+ LD  R     S S S+GP +S  ++ N+G  A    P +P L
Sbjct: 477 WTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRAGLSLPLSPRL 522


>sp|Q54EY4|DST3_DICDI Serine/threonine-protein kinase dst3
           OS=Dictyostelium discoideum GN=dst3 PE=3 SV=1
          Length = 562

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = +2

Query: 11  LLLSHMDCSFR-PVKGCAS*LSLLTWPQNFC--------IQHSEHRLISQNVESVCTILV 163
           +L   MDC +    KGC    S+L     +C        I+    RLI + + +VC  +V
Sbjct: 80  ILKESMDCPYIVEYKGCYLKSSMLLIVMEYCKGGSLLDIIELCGKRLIEEEIAAVCAGVV 139

Query: 164 NLLVYRHA 187
             LVY H+
Sbjct: 140 KGLVYLHS 147
tr_hit_id Q3UQS4
Definition tr|Q3UQS4|Q3UQS4_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus
Align length 67
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917645|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F07.
         (238 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3UQS4|Q3UQS4_MOUSE Putative uncharacterized protein (Fragmen...    35   1.9  

>tr|Q3UQS4|Q3UQS4_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Snx26 PE=2 SV=1
          Length = 1324

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +3

Query: 39  LDLSRVVPLDSPSSHGPKISAYNIQNIGLLA----KTWSPFAPSLLTFWSIDMHLHRC-- 200
           +D   +  L SP   GP +S  N Q  G+      ++W P   S   F S+D HLHRC  
Sbjct: 100 VDFGHIQLLLSPEREGPSLSGENEQVFGVQVTCQGRSW-PVLRSYDDFRSLDAHLHRCIF 158

Query: 201 ---YSCV 212
              +SC+
Sbjct: 159 DRRFSCL 165