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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917646
Clone id YMU001_000103_F09
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGAGAACCCACCCCACATACATAGAGACACACAGACATACTAATCAAAATTGAGCGTCA
AGAGCTTGAATCTAACTATCAAGATGAGTGTACTGATTCACAAAGGTTCATGGATAGAAA
GTTACCTGTAAAAAGTCTCAGTACGCCCTGCTCCCCCTCGAATCAAATCTTGAGCTATCC
TTGTATAATTGTTAGATGAACAAGGTGGAGACTCTGTGAGGTAGCTTCTTGAGGCCGAAA
AGCACTCAAGTGAAGCATCCTCCCCAGCCTTTCTATCATAATGAGGTGTAATGCTTTGAG
CATTCTTATGATAAAACAAACCAAGAGTGAGATCCATCACCTATGTAAGGAGAGAATAAA
CCACTTAAAGACAAGAACTCTAAATTTCATGCGCAAGCTTCACATAGAGAAGGAAACCTC
ACCTACTTACCAGTCTCTGGATGCAAGTATCCCCCATCACACATCAAAGTCCATGAGCGA
TGGAGCTGCAAACTAACTCTATTAGCTTGCATGGCAAGATCCCCCAAATGTTGTGCGA
■■Homology search results ■■ -
sp_hit_id Q9PK47
Definition sp|Q9PK47|XERC_CHLMU Tyrosine recombinase xerC OS=Chlamydia muridarum
Align length 53
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917646|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F09.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PK47|XERC_CHLMU Tyrosine recombinase xerC OS=Chlamydia muri...    32   1.5  
sp|Q6AJW3|MSBA_DESPS Lipid A export ATP-binding/permease protein...    30   7.5  

>sp|Q9PK47|XERC_CHLMU Tyrosine recombinase xerC OS=Chlamydia
           muridarum GN=xerC PE=3 SV=1
          Length = 315

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 319 LFYHKNAQSITPHYDRKAGED-ASLECFSASRSYLTESPPCSSNNYTRIAQDL 164
           L Y KN ++ +PH  R    D +SL+CF   +  LT +PP S    +R +  L
Sbjct: 9   LDYLKNMKAASPHTLRNYSIDLSSLKCFLEKKGELTPTPPLSLQEDSRSSSQL 61


>sp|Q6AJW3|MSBA_DESPS Lipid A export ATP-binding/permease protein
           msbA OS=Desulfotalea psychrophila GN=msbA PE=3 SV=1
          Length = 572

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = -2

Query: 396 LRMKFRVLVFKWFILSLHR*WISLLVCFIIRMLKALHLIMIERLGRMLHLSAFRPQEATS 217
           LR  F+V+     I  ++  W   L+CF+I  L A+ ++   + G++    + + QE T+
Sbjct: 141 LRDFFQVIFLLGVIFYMN--WKLALICFLIIPLAAIPIV---KFGKIFRKLSTKTQEETA 195

Query: 216 QSLHLVHLTI 187
           +  +++H TI
Sbjct: 196 EVSNMLHETI 205
tr_hit_id Q84MF6
Definition tr|Q84MF6|Q84MF6_ORYSJ Putative uncharacterized protein (U-box domain containing protein, expressed) OS=Oryza sativa subsp. japonica
Align length 47
Score (bit) 33.1
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917646|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F09.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q84MF6|Q84MF6_ORYSJ Putative uncharacterized protein (U-box d...    33   9.3  
tr|Q0DR28|Q0DR28_ORYSJ Os03g0424200 protein OS=Oryza sativa subs...    33   9.3  
tr|B8AK63|B8AK63_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|Q84MF6|Q84MF6_ORYSJ Putative uncharacterized protein (U-box
           domain containing protein, expressed) OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g31070 PE=4 SV=1
          Length = 683

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 384 ISCASFT*RRKPHLLTSLWMQVSPITHQSP*AMELQTNSISLHGKIP 524
           +SC   T +++P LL  +W+ + P+T + P A      S S    +P
Sbjct: 555 LSCTGMTRKKRPDLLNEVWIVIEPLTRKPPAATWPYLQSASGDSSVP 601


>tr|Q0DR28|Q0DR28_ORYSJ Os03g0424200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0424200 PE=4 SV=1
          Length = 518

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 384 ISCASFT*RRKPHLLTSLWMQVSPITHQSP*AMELQTNSISLHGKIP 524
           +SC   T +++P LL  +W+ + P+T + P A      S S    +P
Sbjct: 390 LSCTGMTRKKRPDLLNEVWIVIEPLTRKPPAATWPYLQSASGDSSVP 436


>tr|B8AK63|B8AK63_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12119 PE=4 SV=1
          Length = 646

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 384 ISCASFT*RRKPHLLTSLWMQVSPITHQSP*AMELQTNSISLHGKIP 524
           +SC   T +++P LL  +W+ + P+T + P A      S S    +P
Sbjct: 518 LSCTGMTRKKRPDLLNEVWIVIEPLTRKPPAATWPYLQSASGDSSVP 564