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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917648
Clone id YMU001_000103_F11
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCACTTGAAATTTGACATGCAGGTGCAAGATTTAAGCCCATGCTAGCCAGCTACACCTC
CACATTTGTCACAAACAGTCTTCACCCATAAACTCTTGAGGCCACAGTTAGCTCATGATT
GACTCAAACTATATATGCAGCATACAAAGCTTCATACATGCTCAACAGCACACGATGATC
ATCCACCATGCTGAAAAGATGGCAATCCGAAACAAAATAAAAAGGTAAGTTTCAACCACA
ATATCTTGTAATTACGCCAACATAAAACAGCCACAGATTGCACTTCTTCCTACTGGGAGG
ATTATACAAATATCAGATTCTGTACACACTCCACAAATTCTGGATATCACCTCGTCAGAC
CGCAGAGGCATTCCAGGCGTCCACATGATCTGGACTACCACCTCCTTAGGTGGCAACAAA
GGGACCACATTCTCATGCCCCAAGCTCAAGATCAATTCCATCAGAACAGTTTGCTCATCA
ATCCTTCTAACCACTTATCTCCCTCGCTGAAATTCAACTCTACTCCT
■■Homology search results ■■ -
sp_hit_id Q8IZX4
Definition sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID 210 kDa subunit OS=Homo sapiens
Align length 81
Score (bit) 34.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917648|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F11.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID 210 ...    35   0.29 
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associat...    28   1.7  
sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens GN...    32   2.4  
sp|Q8WXI9|P66B_HUMAN Transcriptional repressor p66-beta OS=Homo ...    32   2.4  
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine ...    31   3.2  
sp|Q9N4G4|MED1_CAEEL Mediator of RNA polymerase II transcription...    31   3.2  
sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens GN=...    31   3.2  
sp|B1ZPB7|RPOC_OPITP DNA-directed RNA polymerase subunit beta' O...    31   4.1  
sp|P21687|CRTY_PANAN Lycopene cyclase OS=Pantoea ananas GN=crtY ...    31   4.1  
sp|Q8BZ34|ZN641_MOUSE Zinc finger protein 641 OS=Mus musculus GN...    30   7.1  
sp|Q05892|YL290_YEAST Uncharacterized protein YLR290C, mitochond...    30   7.1  
sp|P62286|ASPM_CANFA Abnormal spindle-like microcephaly-associat...    27   7.5  

>sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID 210 kDa
            subunit OS=Homo sapiens GN=TAF1L PE=1 SV=1
          Length = 1826

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = +1

Query: 154  IHAQQHTMIIHHAEKMAIRNKIKR*VSTTISCNYANIKQPQIALLPTGRIIQISDSVHTP 333
            +H  +   ++    K  +  K KR V TT+ C+Y NI    I    T  ++ +S      
Sbjct: 1352 VHEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNIPHKSIHRRRTDPMVTLS------ 1405

Query: 334  QILDITSSDRRGIPGVHMIWT 396
             IL+   +D R +P  H   T
Sbjct: 1406 SILESIINDMRDLPNTHPFHT 1426


>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated
            protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2
            SV=1
          Length = 3371

 Score = 28.1 bits (61), Expect(2) = 1.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 125  QTIYAAYKASYMLNSTR*SSTMLKRWQSETK*KGKFQPQYLVI 253
            Q+ Y AY+A     S R ++ +++RW    K  G+ + +YL +
Sbjct: 1967 QSRYRAYQARKKYASYRAAAVIIQRWYRAAKLAGRQREEYLAV 2009



 Score = 22.3 bits (46), Expect(2) = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 297  EDYTNIRFCTHSTNSGYHLVRPQRHSRRPH 386
            E+Y  ++       + Y  VR +RH RR H
Sbjct: 2004 EEYLAVKKAALKIQAVYRGVRARRHIRRMH 2033


>sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens
           GN=ZNF473 PE=1 SV=1
          Length = 871

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
 Frame = +3

Query: 132 YMQHTKLHT----CSTAHDDHPPC*KDGNPKQNKKVSFNHNIL*LRQHKTATDCTSSYWE 299
           Y+ H K HT    C +   DHPP   D  P +++              KT TD + SY  
Sbjct: 279 YLWHQKTHTGEKPCKSQDSDHPPS-HDTQPGEHQ--------------KTHTD-SKSY-- 320

Query: 300 DYTNIRFCTHSTNSGYHLVRPQR-HSRRPHDLDYHLLRWQQRDHILMPQ 443
              N   C  +    +HL R Q+ H+R+ ++       +  R H++  Q
Sbjct: 321 ---NCNECGKAFTRIFHLTRHQKIHTRKRYECSKCQATFNLRKHLIQHQ 366


>sp|Q8WXI9|P66B_HUMAN Transcriptional repressor p66-beta OS=Homo
           sapiens GN=GATAD2B PE=1 SV=1
          Length = 593

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 268 QPQIAL---LPTGRIIQISDSVHTPQILDITSSDRRGIPGVHMIWTTTSLGGNKGTTFS 435
           QPQ +L   +PT     +S+    PQ+         G+PGV++ +  T +GG+KG + +
Sbjct: 513 QPQSSLQRGIPTSARSMLSNFAQAPQLS--VPGGLLGMPGVNIAYLNTGIGGHKGPSLA 569


>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max
           PE=2 SV=1
          Length = 320

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 319 SVHTPQILDITSSDRRG--IPGVHMIWTTTSLGGNKGTTFSCPKLKINSIRTVCSSILLT 492
           SV +P++LD+T  D  G    GV M+ T+ SL  +  T  + P + +N+ + V +  + T
Sbjct: 200 SVFSPEVLDLTEDDLIGKFAAGVSMV-TSLSLAISYPTLAAAPHMFVNAYKNVLAVAVET 258

Query: 493 TY 498
            Y
Sbjct: 259 DY 260


>sp|Q9N4G4|MED1_CAEEL Mediator of RNA polymerase II transcription
           subunit 1.1 OS=Caenorhabditis elegans GN=sop-3 PE=2 SV=2
          Length = 1475

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 363 QRHSRRPHDLD-YHLLRWQQRDHILMPQAQDQFHQNSLLINPSNHLSPS 506
           ++H+  PH +  Y + ++QQ     M Q Q Q  Q   + +P N L P+
Sbjct: 760 EQHNPNPHQMSQYQMQQYQQNQQFRMHQMQQQQQQQFQMQSPKNPLVPA 808


>sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens
           GN=HECA PE=1 SV=1
          Length = 543

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 291 YWEDYTNIRFCTHSTNSGYHLVRP 362
           Y+ +Y+N++ C H  N  YH V+P
Sbjct: 510 YFSEYSNVQQCPHCGNLDYHFVKP 533


>sp|B1ZPB7|RPOC_OPITP DNA-directed RNA polymerase subunit beta'
            OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=rpoC
            PE=3 SV=1
          Length = 1384

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 292  TGRIIQISDSVHTPQILDITSSDRRGIPGVHMIWTTTSLGGNKGTTFSCPKLKINSIRTV 471
            TG++ ++ DSV       I ++   G PG  +   T  +GG     F  P++K+ +  TV
Sbjct: 909  TGKVAKVGDSV------GIIAAQSIGEPGTQLTMRTFHIGGVASGGFKTPEIKVRASGTV 962


>sp|P21687|CRTY_PANAN Lycopene cyclase OS=Pantoea ananas GN=crtY
           PE=4 SV=1
          Length = 382

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 216 NKKVSFNHNIL*LRQHKTATDCTSSYWEDYTNIRFCT--HSTNSGYHLVRPQR 368
           N   SF+H+ L   QH+        +W DY  +RF T     NSGY  +  QR
Sbjct: 44  NHTWSFHHDDLTESQHRWIAPLVVHHWPDY-QVRFPTRRRKLNSGYFCITSQR 95


>sp|Q8BZ34|ZN641_MOUSE Zinc finger protein 641 OS=Mus musculus
           GN=Znf641 PE=2 SV=1
          Length = 422

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 273 TDCTSSYWEDYTNIR-FCTHSTNSGYHLVRPQRHSRRPHDLDYHLLRWQ 416
           T+C  S+   +  +R + TH+    +H  R ++   R H LD HLL  Q
Sbjct: 359 TECGKSFGRRHHLVRHWLTHTGEKPFHCPRCEKSFGRKHHLDRHLLTHQ 407
tr_hit_id Q8E376
Definition tr|Q8E376|Q8E376_STRA3 Putative uncharacterized protein gbs1885 OS=Streptococcus agalactiae serotype III
Align length 89
Score (bit) 34.3
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917648|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_F11.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8E376|Q8E376_STRA3 Putative uncharacterized protein gbs1885 ...    34   4.0  
tr|Q8DXF4|Q8DXF4_STRA5 Putative uncharacterized protein OS=Strep...    34   4.0  
tr|Q3DUP6|Q3DUP6_STRAG Putative uncharacterized protein OS=Strep...    34   4.0  
tr|Q3DKB2|Q3DKB2_STRAG Putative uncharacterized protein OS=Strep...    34   4.0  
tr|B8GSF1|B8GSF1_9GAMM Putative uncharacterized protein OS=Thioa...    33   6.7  
tr|B8BSM4|B8BSM4_THAPS Predicted protein OS=Thalassiosira pseudo...    33   8.8  
tr|B4M8D8|B4M8D8_DROVI GJ16791 OS=Drosophila virilis GN=GJ16791 ...    33   8.8  
tr|A2DU98|A2DU98_TRIVA Surface antigen BspA-like OS=Trichomonas ...    33   8.8  

>tr|Q8E376|Q8E376_STRA3 Putative uncharacterized protein gbs1885
           OS=Streptococcus agalactiae serotype III GN=gbs1885 PE=4
           SV=1
          Length = 634

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +3

Query: 180 HPPC*KDGNPKQNKKVSFNHNIL*LRQHKTATDCTSSYWEDYTNIRFCTHSTNSGYHLVR 359
           H  C  DG P +  K S+ +N                    Y    +C  ++   YHLV 
Sbjct: 412 HSTCTLDGQPLEMIKDSWTYN-------------------SYPKCDYCQLTSKDRYHLVE 452

Query: 360 PQRHSRRPHDLDYHLLRWQQRDHILMPQA 446
            Q H +R  D+ YH  RW     + +PQA
Sbjct: 453 GQLHVQRASDIYYH-KRWL----LTLPQA 476


>tr|Q8DXF4|Q8DXF4_STRA5 Putative uncharacterized protein
           OS=Streptococcus agalactiae serotype V GN=SAG1897 PE=4
           SV=1
          Length = 634

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +3

Query: 180 HPPC*KDGNPKQNKKVSFNHNIL*LRQHKTATDCTSSYWEDYTNIRFCTHSTNSGYHLVR 359
           H  C  DG P +  K S+ +N                    Y    +C  ++   YHLV 
Sbjct: 412 HSTCTLDGQPLEMIKDSWTYN-------------------SYPKCDYCQLTSKDRYHLVE 452

Query: 360 PQRHSRRPHDLDYHLLRWQQRDHILMPQA 446
            Q H +R  D+ YH  RW     + +PQA
Sbjct: 453 GQLHVQRASDIYYH-KRWL----LTLPQA 476


>tr|Q3DUP6|Q3DUP6_STRAG Putative uncharacterized protein
           OS=Streptococcus agalactiae 18RS21 GN=SAJ_1804 PE=4 SV=1
          Length = 634

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +3

Query: 180 HPPC*KDGNPKQNKKVSFNHNIL*LRQHKTATDCTSSYWEDYTNIRFCTHSTNSGYHLVR 359
           H  C  DG P +  K S+ +N                    Y    +C  ++   YHLV 
Sbjct: 412 HSTCTLDGQPLEMIKDSWTYN-------------------SYPKCDYCQLTSKDRYHLVE 452

Query: 360 PQRHSRRPHDLDYHLLRWQQRDHILMPQA 446
            Q H +R  D+ YH  RW     + +PQA
Sbjct: 453 GQLHVQRASDIYYH-KRWL----LTLPQA 476


>tr|Q3DKB2|Q3DKB2_STRAG Putative uncharacterized protein
           OS=Streptococcus agalactiae 515 GN=SAL_1940 PE=4 SV=1
          Length = 634

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +3

Query: 180 HPPC*KDGNPKQNKKVSFNHNIL*LRQHKTATDCTSSYWEDYTNIRFCTHSTNSGYHLVR 359
           H  C  DG P +  K S+ +N                    Y    +C  ++   YHLV 
Sbjct: 412 HSTCTLDGQPLEMIKDSWTYN-------------------SYPKCDYCQLTSKDRYHLVE 452

Query: 360 PQRHSRRPHDLDYHLLRWQQRDHILMPQA 446
            Q H +R  D+ YH  RW     + +PQA
Sbjct: 453 GQLHVQRASDIYYH-KRWL----LTLPQA 476


>tr|B8GSF1|B8GSF1_9GAMM Putative uncharacterized protein
            OS=Thioalkalivibrio sp. HL-EbGR7 GN=Tgr7_1773 PE=4 SV=1
          Length = 1575

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 402  LLRW--QQRDHILMPQAQDQFHQNSLLINPSNHLSP 503
            +LRW  + R H L+  + DQF+QN LLI PS   +P
Sbjct: 1017 MLRWHYRSRHHSLIAVSNDQFYQNQLLIFPSPGSNP 1052


>tr|B8BSM4|B8BSM4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_2034 PE=4 SV=1
          Length = 712

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 294 WEDYTNIRFCTHSTNSGYHLVRPQRHSRRPHDL-DYHLLRWQQRDHILMPQAQ 449
           W  Y      T S NS +  +  Q + R+ H L DY LLR+   DH  MP  +
Sbjct: 255 WVYYIGDEDPTDSLNSEFETIGLQLYHRKKHQLLDYDLLRFASIDHDTMPSVE 307


>tr|B4M8D8|B4M8D8_DROVI GJ16791 OS=Drosophila virilis GN=GJ16791
           PE=4 SV=1
          Length = 889

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 327 HSTNSGYHLVRPQRHSRRPHDLDYHLLRWQQRDHILMPQAQDQFHQNSLLINPSNHLSPS 506
           H  +  +H+ R Q+  ++      HL + QQ+   L  Q Q Q HQ    +    H  P+
Sbjct: 672 HQHHHIHHVQRQQQQQQQQQHQHQHLQQQQQQQQHLQQQQQQQQHQQHQHLQQQQHQRPA 731

Query: 507 LKFNS 521
           L   +
Sbjct: 732 LSLQA 736


>tr|A2DU98|A2DU98_TRIVA Surface antigen BspA-like OS=Trichomonas
           vaginalis G3 GN=TVAG_278570 PE=4 SV=1
          Length = 469

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
 Frame = +1

Query: 232 STTISCNYAN-----IKQPQIALLPTGRIIQISDSVHTPQILDITSSDRRGIPGVHMIWT 396
           S T++  + N     +K   ++ LPTG    + D V   QILD+T S    IP ++ +  
Sbjct: 45  SATLAQQFLNGGCTTLKIDSLSALPTGTSKTVFDYV---QILDLTGSQITNIPEIYFLSN 101

Query: 397 TT--SLGGNKGTTFSCPKLKINSIRTV 471
                +    GT+ S    K++SI+T+
Sbjct: 102 NVIQEVKLKTGTSISALAFKLSSIKTI 128