BP917650 |
Clone id |
YMU001_000103_G02 |
Library |
YMU01 |
Length |
441 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000103_G02. |
Accession |
BP917650 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1320Contig1 |
Sequence |
CATAGCTATCTCTATCTCTAGGACATAATCATCTACCATACGTGGACAGCAGATCGAGAG TGGCTATGCTCTGCACCCTCTTTCCAATCATGGTTTCCACATTATCGCATTCTCCTTGCA CTATTCTTCCTTTCGGGAGGGTACGTACTTCTCAAACTCGCTGCACCTATTTGGTATCGA GATGATCAGAGTATGGTACATGCTATATTCTATTGTCTTATGGGTGACTACCATTAGTCT ATACCTTACACTTTCTTTCAAGGGTGATTCTGGGCTTATCTTGAATTCATCAGTCCAACT GCACCTCAATCGACTGCTCGTCCACGACGTTCATATACATCCATCAGGTACCCCTATGTA CCGCTGAATCGCCCAACAAAAGCTCGATAGCTCTGCACGGCCACTTATAAACCCCAAGCA CTTGTTCCAGGTTGCCCTTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10429 |
Definition |
sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccharomyces pombe |
Align length |
95 |
Score (bit) |
33.5 |
E-value |
0.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917650|Adiantum capillus-veneris mRNA, clone: YMU001_000103_G02. (441 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccha... 33 0.40 sp|P27914|POLG_DEN2T Genome polyprotein (Fragments) OS=Dengue vi... 32 0.90 sp|Q9WDA6|POLG_DEN2Q Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P12823|POLG_DEN2P Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2 (... 32 0.90 sp|P07564|POLG_DEN2J Genome polyprotein OS=Dengue virus type 2 (... 31 2.0 sp|A1JIK1|ACTP_YERE8 Cation/acetate symporter actP OS=Yersinia e... 31 2.6 sp|Q49KI5|TS1R3_FELCA Taste receptor type 1 member 3 OS=Felis si... 31 2.6 sp|Q5UCB8|POLG_DEN4S Genome polyprotein OS=Dengue virus type 4 (... 31 2.6 sp|Q2YHF2|POLG_DEN4H Genome polyprotein OS=Dengue virus type 4 (... 31 2.6 sp|P09866|POLG_DEN4D Genome polyprotein OS=Dengue virus type 4 (... 31 2.6 sp|A2A884|ZEP3_MOUSE Transcription factor HIVEP3 OS=Mus musculus... 30 3.4 sp|Q9PQW0|Y183_UREPA Uncharacterized protein UU183 OS=Ureaplasma... 30 5.7 sp|Q73C11|Y1257_BACC1 UPF0344 protein BCE_1257 OS=Bacillus cereu... 29 7.5 sp|Q81GP1|Y1150_BACCR UPF0344 protein BC_1150 OS=Bacillus cereus... 29 7.5 sp|Q7M717|TR102_MOUSE Taste receptor type 2 member 102 OS=Mus mu... 29 7.5 sp|Q8LX26|COX3_LEMCA Cytochrome c oxidase subunit 3 OS=Lemur cat... 29 7.5 sp|Q66FN0|ACTP_YERPS Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|A4TS08|ACTP_YERPP Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|Q1CE35|ACTP_YERPN Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|Q8ZJ73|ACTP_YERPE Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|Q1C0M8|ACTP_YERPA Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|A7FNG3|ACTP_YERP3 Cation/acetate symporter actP OS=Yersinia p... 29 7.5 sp|Q2YHF0|POLG_DEN4T Genome polyprotein OS=Dengue virus type 4 (... 29 7.7 sp|Q58HT7|POLG_DEN4P Genome polyprotein OS=Dengue virus type 4 (... 29 7.7 sp|P30026|POLG_DEN2D Genome polyprotein (Fragment) OS=Dengue vir... 29 7.7 sp|P17763|POLG_DEN1W Genome polyprotein OS=Dengue virus type 1 (... 29 7.7
>sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccharomyces pombe GN=cnd3 PE=1 SV=1 Length = 875
Score = 33.5 bits (75), Expect = 0.40 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 10/95 (10%) Frame = +2
Query: 65 YALHPLSNHGFHIIAFSLHYSSFREGTYFSNSLHLFGIEMIR----------VWYMLYSI 214 +AL + + F + AF H + +R T F ++L L +E+ R + ++ + Sbjct: 656 HALRQVLGYFFPVYAFGAHENQWRIATIFCDAL-LSLLEIYRDLDEDDVQLSIGHIAQQM 714
Query: 215 VLWVTTISLYLTLSFKGDSGLILNSSVQLHLNRLL 319 + W LY + GD + LN +V LHL ++ Sbjct: 715 LDWTDNEKLYERKTQTGDDYIALNHNVHLHLANMI 749
>sp|P27914|POLG_DEN2T Genome polyprotein (Fragments) OS=Dengue virus type 2 (strain Tonga/EKB194/1974) PE=1 SV=1 Length = 1683
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 488 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 536
>sp|Q9WDA6|POLG_DEN2Q Genome polyprotein OS=Dengue virus type 2 (strain Peru/IQT2913/1996) PE=3 SV=1 Length = 3391
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 816
>sp|P12823|POLG_DEN2P Genome polyprotein OS=Dengue virus type 2 (strain Puerto Rico/PR159-S1/1969) PE=1 SV=1 Length = 3388
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 816
>sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2 (strain Thailand/NGS-C/1944) PE=1 SV=2 Length = 3391
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2 (isolate Thailand/0168/1979) PE=1 SV=2 Length = 3391
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2 (strain 16681-PDK53) PE=3 SV=1 Length = 3391
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2 (strain Thailand/16681/1984) PE=1 SV=1 Length = 3391
Score = 32.3 bits (72), Expect = 0.90 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>sp|P07564|POLG_DEN2J Genome polyprotein OS=Dengue virus type 2 (strain Jamaica/1409/1983) PE=3 SV=2 Length = 3391
Score = 31.2 bits (69), Expect = 2.0 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 11/40 (27%) Frame = -1
Query: 342 GCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 GC+ SW + L+C +WT+++K PESP K Sbjct: 778 GCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>sp|A1JIK1|ACTP_YERE8 Cation/acetate symporter actP OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=actP PE=3 SV=1 Length = 551
Score = 30.8 bits (68), Expect = 2.6 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +2
Query: 176 IEMIRVWYMLYSIVL---WVTTISLYLTLSFKGDSGLILNSSVQLHLNRLLVHDVHIHPS 346 + ++ V Y+L+ +L WV I L L+ L++ SV + N L V +HP Sbjct: 189 VGILMVMYVLFGGMLATTWVQIIKAVLLLAGASFMALMVMKSVNFNFNTLFSEAVKVHPK 248
Query: 347 G 349 G Sbjct: 249 G 249
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7SMC2 |
Definition |
tr|B7SMC2|B7SMC2_9HEMI NADH dehydrogenase subunit 4 OS=Geocoris pallidipennis |
Align length |
59 |
Score (bit) |
35.8 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917650|Adiantum capillus-veneris mRNA, clone: YMU001_000103_G02. (441 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7SMC2|B7SMC2_9HEMI NADH dehydrogenase subunit 4 OS=Geocoris ... 36 1.1 tr|Q1QQF7|Q1QQF7_NITHX Cyclic nucleotide-binding protein OS=Nitr... 35 1.4 tr|A1DZ87|A1DZ87_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 34 3.1 tr|Q0QJ94|Q0QJ94_9NEOP Cytochrome c oxidase subunit 3 OS=Xenos v... 34 3.2 tr|B7ZE91|B7ZE91_9NEOP Cytochrome oxidase subunit 3 OS=Xenos ves... 34 3.2 tr|Q8QTW6|Q8QTW6_9FLAV Polyprotein (Fragment) OS=Dengue virus 3 ... 34 4.1 tr|Q8I1T3|Q8I1T3_PLAF7 Nonclathrin coat protein zeta2-cop-relate... 34 4.1 tr|B6VJ72|B6VJ72_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1 33 5.4 tr|Q5EXC0|Q5EXC0_AMBCA Cytochrome c oxidase subunit 3 OS=Ambysto... 33 7.0 tr|A6G6X6|A6G6X6_9DELT Sterol desaturase family protein OS=Plesi... 33 7.0 tr|P89532|P89532_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57090|O57090_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57089|O57089_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57085|O57085_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57084|O57084_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57083|O57083_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|O57082|O57082_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ... 33 9.2 tr|B6VJ65|B6VJ65_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1 33 9.2 tr|B5U7V7|B5U7V7_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1 33 9.2 tr|B6F2H1|B6F2H1_ALTMA Amylosucrase OS=Alteromonas macleodii GN=... 33 9.2 tr|Q2UIQ0|Q2UIQ0_ASPOR Carboxylesterase type B OS=Aspergillus or... 33 9.2 tr|Q70EE2|Q70EE2_AMBME Cytochrome c oxidase subunit 3 OS=Ambysto... 33 9.2 tr|Q5EXF9|Q5EXF9_AMBTI Cytochrome c oxidase subunit 3 OS=Ambysto... 33 9.2 tr|Q5EXE6|Q5EXE6_9SALA Cytochrome c oxidase subunit 3 OS=Ambysto... 33 9.2 tr|Q5EXD3|Q5EXD3_9SALA Cytochrome c oxidase subunit 3 OS=Ambysto... 33 9.2 tr|Q87PV7|Q87PV7_VIBPA Putative VgrG protein OS=Vibrio parahaemo... 33 9.2
>tr|B7SMC2|B7SMC2_9HEMI NADH dehydrogenase subunit 4 OS=Geocoris pallidipennis GN=ND4 PE=4 SV=1 Length = 438
Score = 35.8 bits (81), Expect = 1.1 Identities = 23/59 (38%), Positives = 36/59 (61%) Frame = +2
Query: 146 YFSNSLHLFGIEMIRVWYMLYSIVLWVTTISLYLTLSFKGDSGLILNSSVQLHLNRLLV 322 Y+SN + +G++M+ W +L SI W+ +SL + SFK S LNSS L +N +L+ Sbjct: 40 YYSNLSYSYGVDMVSFWMILLSI--WI--VSLMIMASFKIKSS--LNSSDFLLVNIILL 92
>tr|Q1QQF7|Q1QQF7_NITHX Cyclic nucleotide-binding protein OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_0652 PE=4 SV=1 Length = 222
Score = 35.4 bits (80), Expect = 1.4 Identities = 20/49 (40%), Positives = 30/49 (61%) Frame = +2
Query: 185 IRVWYMLYSIVLWVTTISLYLTLSFKGDSGLILNSSVQLHLNRLLVHDV 331 +RV+ ML ++VL +T ISL+ L F +GL + +LH LLV +V Sbjct: 34 LRVFGMLANLVLMITAISLHNVLQFGLHAGLFCLNGYRLHQMLLLVREV 82
>tr|A1DZ87|A1DZ87_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 PE=4 SV=1 Length = 80
Score = 34.3 bits (77), Expect = 3.1 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 15/53 (28%) Frame = -1
Query: 369 IQRYIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 I Y+GV GCI SW S L+C +WT+++K PESP K Sbjct: 27 ITLYLGVMVQADSGCI-VSWKSKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 78
>tr|Q0QJ94|Q0QJ94_9NEOP Cytochrome c oxidase subunit 3 OS=Xenos vesparum PE=3 SV=1 Length = 251
Score = 34.3 bits (77), Expect = 3.2 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2
Query: 89 HGFHIIAFSLHYSSFREGTYFSNSLHLFGIEMIRVWYMLYSIVLWV-TTISLYL 247 HGFH+I + SS+ +SNS H F E WY + ++W+ SLYL Sbjct: 199 HGFHVIIGLMFISSYMIKMKYSNSWHNFNFESAS-WYWHFVDLVWLFVYTSLYL 251
>tr|B7ZE91|B7ZE91_9NEOP Cytochrome oxidase subunit 3 OS=Xenos vesparum GN=cox3 PE=4 SV=1 Length = 251
Score = 34.3 bits (77), Expect = 3.2 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2
Query: 89 HGFHIIAFSLHYSSFREGTYFSNSLHLFGIEMIRVWYMLYSIVLWV-TTISLYL 247 HGFH+I + SS+ +SNS H F E WY + ++W+ SLYL Sbjct: 199 HGFHVIIGLMFISSYMIKMKYSNSWHNFNFESAS-WYWHFVDLVWLFVYTSLYL 251
>tr|Q8QTW6|Q8QTW6_9FLAV Polyprotein (Fragment) OS=Dengue virus 3 PE=4 SV=1 Length = 80
Score = 33.9 bits (76), Expect = 4.1 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 15/54 (27%) Frame = -1
Query: 372 AIQRYIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 A+ Y+GV GC+ SW + L+C +WT+++K PESP K Sbjct: 26 AVTLYLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 78
>tr|Q8I1T3|Q8I1T3_PLAF7 Nonclathrin coat protein zeta2-cop-related protein, putative OS=Plasmodium falciparum (isolate 3D7) GN=PFD0745c PE=4 SV=1 Length = 208
Score = 33.9 bits (76), Expect = 4.1 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +2
Query: 236 SLYLTLSFKGDSGLILNSSVQLHLNRLLVHDVHIHPSGTPMYR*IAQQK 382 S+YL L DSG+I+ +S + +NRL +++ I TP+ + I+ K Sbjct: 149 SVYLILDEIADSGIIMETSASVIINRLYMNESDIQEQHTPLNQAISSAK 197
>tr|B6VJ72|B6VJ72_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1 Length = 3391
Score = 33.5 bits (75), Expect = 5.4 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 15/50 (30%) Frame = -1
Query: 360 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 256 Y+GV GC+ SW S L+C +WT+++K PESP K Sbjct: 768 YLGVMVQADSGCV-VSWKSKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816
>tr|Q5EXC0|Q5EXC0_AMBCA Cytochrome c oxidase subunit 3 OS=Ambystoma californiense GN=COX3 PE=3 SV=1 Length = 261
Score = 33.1 bits (74), Expect = 7.0 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = +2
Query: 89 HGFHIIAFSLHYSS--FREGTYFSNSLHLFGIEMIRVWYMLYSIVLWVTTISLYLTLSFK 262 HG H+I SL S FR+ +Y S H FG E WY + V+W + LY+++ + Sbjct: 204 HGLHVIIGSLFLSVCLFRQISYHFTSNHHFGFE-AAAWYWHFVDVVW---LFLYVSIYWW 259
Query: 263 G 265 G Sbjct: 260 G 260
>tr|A6G6X6|A6G6X6_9DELT Sterol desaturase family protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_06256 PE=4 SV=1 Length = 272
Score = 33.1 bits (74), Expect = 7.0 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 21/124 (16%) Frame = +2
Query: 77 PLSNHGFHIIAFSLHYSSFREGTYFSNSLHLFGIEMIRVWYMLYSIVLWVTTISLYLTLS 256 PL+ + F I F G Y L +F + + +W V W T + Y+ L Sbjct: 146 PLAGYAFSAI------EGFVLGLYLPLVLLVFPVNRVMLWIF----VFWFTFLEAYVHLG 195
Query: 257 FKGDSGLILNSSVQLHLNRLLVHDVH---------------------IHPSGTPMYR*IA 373 F+ I + V L + HD+H IHP T Y + Sbjct: 196 FEVLPRWIARNPVTKFLGTAVFHDMHHENGAYNFGVYFTWWDRMMGTIHPQYTERYEQVT 255
Query: 374 QQKL 385 +Q+L Sbjct: 256 EQRL 259
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