BP917651 |
Clone id |
YMU001_000103_G03 |
Library |
YMU01 |
Length |
319 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000103_G03. |
Accession |
BP917651 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGTCTTCCTTGTCATAATGTGATGGAATACCAATCCAGTCCACGAGATGTGTCGCAGCCT TTGGACCACTCTCTACATAATACACTCCAATTAATGCTTCGACGACATCGGCCAGGGTCT TGCTAGATAAGACCCTGTAGGAGCTTAAGTCTCCTTCAATTTCACCATCTTCTGCTATGC TTGGCTCTTCATCGCTGTCGCCAAGCACCTCATACTCACTGCTTTGATCCTTCAACTCCT CTTCAGATTTATCTTTTCGCAGATCAAACATACTTCTCTCAGACAGAAAATCTTCATCCT TAGAATCTTCATCAAAAAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SP32 |
Definition |
sp|Q9SP32|DICER_ARATH Endoribonuclease Dicer homolog OS=Arabidopsis thaliana |
Align length |
106 |
Score (bit) |
95.1 |
E-value |
9.0e-20 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3SRP9 |
Definition |
tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens |
Align length |
104 |
Score (bit) |
103.0 |
E-value |
4.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917651|Adiantum capillus-veneris mRNA, clone: YMU001_000103_G03. (319 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens GN=... 103 4e-21 tr|A9RV91|A9RV91_PHYPA DsRNA-specific nuclease dicer and related... 103 4e-21 tr|Q2HTA7|Q2HTA7_MEDTR Helicase, C-terminal; Argonaute and Dicer... 101 2e-20 tr|A7PXV4|A7PXV4_VITVI Chromosome chr15 scaffold_37, whole genom... 98 2e-19 tr|Q6DT79|Q6DT79_ARALP AT1G01040 (Fragment) OS=Arabidopsis lyrat... 96 1e-18 tr|Q56Y50|Q56Y50_ARATH CAF protein OS=Arabidopsis thaliana GN=At... 95 2e-18 tr|A7IYQ4|A7IYQ4_PHYPA Dicer-like 1b protein OS=Physcomitrella p... 95 2e-18 tr|Q8LMR2|Q8LMR2_ORYSJ Os03g0121800 protein OS=Oryza sativa subs... 91 3e-17 tr|A3ADL0|A3ADL0_ORYSJ Putative uncharacterized protein OS=Oryza... 91 3e-17 tr|A2XBW0|A2XBW0_ORYSI Putative uncharacterized protein OS=Oryza... 91 3e-17 tr|A7P4V9|A7P4V9_VITVI Chromosome chr4 scaffold_6, whole genome ... 50 7e-05 tr|Q86MA9|Q86MA9_ANOGA Dicer-1 OS=Anopheles gambiae PE=2 SV=1 49 2e-04 tr|A7QS05|A7QS05_VITVI Chromosome undetermined scaffold_155, who... 47 5e-04 tr|B3RLM8|B3RLM8_TRIAD Putative uncharacterized protein OS=Trich... 46 0.001 tr|B0ZRQ3|B0ZRQ3_9METZ Dicer-like protein D (Fragment) OS=Placoz... 46 0.001 tr|B0ZRQ2|B0ZRQ2_TRIAD Dicer-like protein D (Fragment) OS=Tricho... 46 0.001 tr|Q9LXW7|Q9LXW7_ARATH Putative uncharacterized protein T15B3_60... 45 0.001 tr|B8ZYR9|B8ZYR9_NICBE Dicel-like 4 (Fragment) OS=Nicotiana bent... 45 0.001 tr|B8LN71|B8LN71_PICSI Putative uncharacterized protein OS=Picea... 45 0.001 tr|B3LZQ9|B3LZQ9_DROAN GF18290 OS=Drosophila ananassae GN=GF1829... 45 0.001 tr|Q5N870|Q5N870_ORYSJ Putative Endoribonuclease Dicer homolog (... 45 0.002 tr|A3A0R6|A3A0R6_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002 tr|Q7QCW7|Q7QCW7_ANOGA AGAP002836-PA OS=Anopheles gambiae GN=AGA... 44 0.003 tr|B0ZRQ6|B0ZRQ6_NEMVE Dicer 1 (Fragment) OS=Nematostella vecten... 44 0.003 tr|B0W7S3|B0W7S3_CULQU Endoribonuclease Dcr-1 OS=Culex quinquefa... 44 0.004 tr|Q3SA53|Q3SA53_ARATH Dicer-like 4 OS=Arabidopsis thaliana GN=A... 43 0.007 tr|B3SRQ1|B3SRQ1_PHYPA Dicer-like 4 OS=Physcomitrella patens PE=... 43 0.007 tr|B8A862|B8A862_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009 tr|Q49LL5|Q49LL5_AEDAE Dicer-1 OS=Aedes aegypti PE=2 SV=1 43 0.009 tr|Q17KP3|Q17KP3_AEDAE Dicer-1 OS=Aedes aegypti GN=AAEL001612 PE... 43 0.009
>tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens GN=DCL1a PE=2 SV=1 Length = 1662
Score = 103 bits (257), Expect = 4e-21 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYE-VLGDSDEEPSIAEDGEIEGDLS 143 VFDED KD D S++S L+ + S E ++ S E E V+ + E + EDGEIEGD S Sbjct: 1199 VFDEDIKDGDD-SDKS---LKAEASREVVEIVSEEGEIVVKELSTESASMEDGEIEGDSS 1254
Query: 142 SYRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYD 11 +YRVLSSKTLADVVEA IG+YYVE G AATHL++WIGIP +D Sbjct: 1255 AYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPVEFD 1298
>tr|A9RV91|A9RV91_PHYPA DsRNA-specific nuclease dicer and related ribonuclease OS=Physcomitrella patens subsp. patens GN=PpDCL1a PE=4 SV=1 Length = 1662
Score = 103 bits (257), Expect = 4e-21 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYE-VLGDSDEEPSIAEDGEIEGDLS 143 VFDED KD D S++S L+ + S E ++ S E E V+ + E + EDGEIEGD S Sbjct: 1199 VFDEDIKDGDD-SDKS---LKAEASREVVEIVSEEGEIVVKELSTESASMEDGEIEGDSS 1254
Query: 142 SYRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYD 11 +YRVLSSKTLADVVEA IG+YYVE G AATHL++WIGIP +D Sbjct: 1255 AYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPVEFD 1298
>tr|Q2HTA7|Q2HTA7_MEDTR Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial OS=Medicago truncatula GN=MtrDRAFT_AC150443g32v2 PE=4 SV=1 Length = 1939
Score = 101 bits (252), Expect = 2e-20 Identities = 59/106 (55%), Positives = 69/106 (65%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDED+KDE E S+FD + + E D + E+E DE EDGE+E D SS Sbjct: 1489 VFDEDTKDE----ESSLFDQERSIFKAERMDNTDEFE-----DE----MEDGELESDSSS 1535
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYVE G AA HL+ WIGI D ++ Sbjct: 1536 YRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDE 1581
>tr|A7PXV4|A7PXV4_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026189001 PE=4 SV=1 Length = 1961
Score = 97.8 bits (242), Expect = 2e-19 Identities = 58/106 (54%), Positives = 69/106 (65%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDED+K+ +E S+FD + SE ++ G D+E EDGE+E D SS Sbjct: 1507 VFDEDTKE----TESSLFDHERPFSETA---PGNDRHGDGYDDDE---MEDGELESDSSS 1556
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYVE G AA HL+ WIGI +D ED Sbjct: 1557 YRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQVEFDPED 1602
>tr|Q6DT79|Q6DT79_ARALP AT1G01040 (Fragment) OS=Arabidopsis lyrata subsp. petraea PE=4 SV=1 Length = 179
Score = 95.5 bits (236), Expect = 1e-18 Identities = 57/106 (53%), Positives = 65/106 (61%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDED+KD S FD + EE D + E+ EDGE+EGDLSS Sbjct: 59 VFDEDTKD----GGSSFFDEEQKPVSEENSDVFEDGEM-----------EDGELEGDLSS 103
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYVE G AA HL+ WIGI D ++ Sbjct: 104 YRVLSSKTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVEDDPDE 149
>tr|Q56Y50|Q56Y50_ARATH CAF protein OS=Arabidopsis thaliana GN=At1g01040 PE=2 SV=1 Length = 690
Score = 95.1 bits (235), Expect = 2e-18 Identities = 57/106 (53%), Positives = 65/106 (61%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDED+KD S FD + EE D + E+ EDGE+EGDLSS Sbjct: 230 VFDEDTKD----GGSSFFDEEQKPVSEENSDVFEDGEM-----------EDGELEGDLSS 274
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYVE G AA HL+ WIGI D ++ Sbjct: 275 YRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDE 320
>tr|A7IYQ4|A7IYQ4_PHYPA Dicer-like 1b protein OS=Physcomitrella patens GN=DCL1b PE=2 SV=1 Length = 1695
Score = 95.1 bits (235), Expect = 2e-18 Identities = 49/102 (48%), Positives = 66/102 (64%) Frame = -1
Query: 316 FDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSSY 137 FDED +D D + S + + E ++ E E++ + + E EDGEIEGD SY Sbjct: 1224 FDEDLRDGDDSDKES----KPEVEREVVEIVGEEGEIVKELNTESENMEDGEIEGDSGSY 1279
Query: 136 RVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYD 11 RVLSSKTLADVVE +G+YYVE G +AATH ++W+GIP +D Sbjct: 1280 RVLSSKTLADVVEVFMGMYYVEGGGEAATHFMNWVGIPVEFD 1321
>tr|Q8LMR2|Q8LMR2_ORYSJ Os03g0121800 protein OS=Oryza sativa subsp. japonica GN=OJ1705B08.11 PE=4 SV=1 Length = 1883
Score = 90.9 bits (224), Expect = 3e-17 Identities = 55/106 (51%), Positives = 70/106 (66%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDE+S++ E S+FD ++ + EL+ +S + D ++ EDGEIEGD S Sbjct: 1427 VFDEESREY----EPSIFD--EESTGCELQKESYD-------DYADNMQEDGEIEGDSSC 1473
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYV G AA HL+ WIGI + D E+ Sbjct: 1474 YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEE 1519
>tr|A3ADL0|A3ADL0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_008882 PE=4 SV=1 Length = 1883
Score = 90.9 bits (224), Expect = 3e-17 Identities = 55/106 (51%), Positives = 70/106 (66%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDE+S++ E S+FD ++ + EL+ +S + D ++ EDGEIEGD S Sbjct: 1427 VFDEESREY----EPSIFD--EESTGCELQKESYD-------DYADNMQEDGEIEGDSSC 1473
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYV G AA HL+ WIGI + D E+ Sbjct: 1474 YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEE 1519
>tr|A2XBW0|A2XBW0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09779 PE=4 SV=1 Length = 1883
Score = 90.9 bits (224), Expect = 3e-17 Identities = 55/106 (51%), Positives = 70/106 (66%) Frame = -1
Query: 319 VFDEDSKDEDFLSERSMFDLRKDKSEEELKDQSSEYEVLGDSDEEPSIAEDGEIEGDLSS 140 VFDE+S++ E S+FD ++ + EL+ +S + D ++ EDGEIEGD S Sbjct: 1427 VFDEESREY----EPSIFD--EESTGCELQKESYD-------DYADNMQEDGEIEGDSSC 1473
Query: 139 YRVLSSKTLADVVEALIGVYYVESGPKAATHLVDWIGIPSHYDKED 2 YRVLSSKTLADVVEALIGVYYV G AA HL+ WIGI + D E+ Sbjct: 1474 YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEE 1519
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