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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917652
Clone id YMU001_000103_G04
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTCGCGGTCGCAGGAATTTGGTTGAATTCTTGAAACGTACAAATTGTGCCC
TTGGAAAACATAGCATACAATGATTGACAAATACAGACAACTTGCGTGATACAAAACCAG
CACATTTTGACTAACTGTCGTCTGTCTCCAATCAGATTTCCCTCACCACCATGTTTATGC
CACCAGAACTACAGCGACATTTTCCTCCAAGTTAGCCGGCATGATTTCACCATCTTGATT
GACACCCCACTTTTAGCTGCCAAATGAACTTATGACACCACCATTGTATGGGTGATCACA
CGGTGCAAAACCTTTCTTTGAAAGGTTGTGTCCTGCGCTCTGAAGCAAAACACACTGTAG
GAACTCCTTTGTTGTACGTCTTCATTCAGCAGTGCCAAAATGCTGACAGCAGAACCAAAT
ACTTCTTTGCTGCTTTTGTGACATATCAAACAAACCACTTGGATGCTATACAAAGTTCAA
ACCAGAAGGCTTGCTTGATCATCCTCCATCCCCTTCCCTCATAACTTGATCGATTGATTG
C
■■Homology search results ■■ -
sp_hit_id P26628
Definition sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease virus (strain Texas)
Align length 54
Score (bit) 33.1
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917652|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_G04.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease v...    33   0.77 
sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease v...    32   1.3  
sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease ...    32   1.3  
sp|P12572|FUS_NDVA Fusion glycoprotein F0 OS=Newcastle disease v...    32   1.3  
sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease v...    32   1.7  
sp|Q3K5Y2|RPOC_PSEPF DNA-directed RNA polymerase subunit beta' O...    30   6.5  
sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease v...    30   8.5  

>sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain Texas) GN=F PE=3 SV=1
          Length = 553

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+L+  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCKLTTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain Italien/45) GN=F PE=2 SV=1
          Length = 553

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCKMTTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain Her/33) GN=F PE=3 SV=1
          Length = 553

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCKMTTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>sp|P12572|FUS_NDVA Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain Australia-Victoria/32) GN=F PE=3 SV=2
          Length = 553

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCKMTTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain Miyadera/51) GN=F PE=3 SV=1
          Length = 553

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL 209
           ++ NC+++  R   PP +  QNY +    + RH   +L
Sbjct: 390 VIANCKMTTCRCADPPGIISQNYGEAVSLIDRHSCNVL 427


>sp|Q3K5Y2|RPOC_PSEPF DNA-directed RNA polymerase subunit beta'
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpoC PE=3
           SV=1
          Length = 1399

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 361 LNEDVQQRSSYSVFCFRAQDTTFQRKVLHRVITHTMVVS*VHLAAKSGVSIKMVKSC 191
           +NE V  R   SV   R  DTT  R +L +V+   +    V+L  K     K++  C
Sbjct: 552 INETVNDRDGNSVNNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKAISKLINQC 608


>sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease
           virus (strain D26/76) GN=F PE=1 SV=1
          Length = 553

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + R    IL +D   L     +D T
Sbjct: 390 VIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDAT 443
tr_hit_id Q9JB29
Definition tr|Q9JB29|Q9JB29_9PARA Fusion glycoprotein F0 (Fragment) OS=Newcastle disease virus
Align length 54
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917652|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_G04.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9JB29|Q9JB29_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    35   1.6  
tr|Q6WG46|Q6WG46_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    34   4.8  
tr|Q5G1K8|Q5G1K8_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    34   4.8  
tr|Q15EQ7|Q15EQ7_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    34   4.8  
tr|Q15EP5|Q15EP5_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    34   4.8  
tr|Q5RIG3|Q5RIG3_DANRE Novel protein similar to vertebrate nucle...    33   6.2  
tr|Q9QPS2|Q9QPS2_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   6.2  
tr|Q8V1Q5|Q8V1Q5_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   6.2  
tr|Q7T7S7|Q7T7S7_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   6.2  
tr|Q15EL2|Q15EL2_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   6.2  
tr|A9LSB4|A9LSB4_9PARA Fusion protein (Fragment) OS=Newcastle di...    33   6.2  
tr|A5HMF6|A5HMF6_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   6.2  
tr|Q9WF46|Q9WF46_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   8.1  
tr|Q8QT15|Q8QT15_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   8.1  
tr|Q38IB5|Q38IB5_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   8.1  
tr|Q2HQS7|Q2HQS7_9PARA Fusion glycoprotein F0 OS=Pigeon paramyxo...    33   8.1  
tr|O41373|O41373_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   8.1  
tr|O41372|O41372_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   8.1  
tr|O41367|O41367_9PARA Fusion glycoprotein F0 (Fragment) OS=Newc...    33   8.1  
tr|A7XL36|A7XL36_9PARA Fusion glycoprotein F0 OS=Newcastle disea...    33   8.1  

>tr|Q9JB29|Q9JB29_9PARA Fusion glycoprotein F0 (Fragment)
           OS=Newcastle disease virus GN=F PE=3 SV=1
          Length = 120

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  RF  PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 25  VIANCKITTCRFADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 78


>tr|Q6WG46|Q6WG46_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus GN=F PE=2 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +DTT
Sbjct: 390 VVANCKITTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDTT 443


>tr|Q5G1K8|Q5G1K8_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus GN=F PE=3 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTTIVWVIT 272
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T    I+
Sbjct: 390 VIANCKITTCRCADPPGIISQNYGEAISLIDRHSCNVLSLDGITLRLSGEFDATYQKNIS 449

Query: 273 RCKTFL*KVVSCALKQNTL*ELLCCTSSFSSAKMLTAEPNTSL 401
              T +  +V+  L  +T  EL    +S S+A    AE N+ L
Sbjct: 450 ILDTQV--IVTGNLDIST--ELGNVNNSISNALDQLAESNSKL 488


>tr|Q15EQ7|Q15EQ7_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus GN=F PE=3 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTTIVWVIT 272
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T    I+
Sbjct: 390 VIANCKITTCRCTDPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDATYQKNIS 449

Query: 273 RCKTFL*KVVSCALKQNTL*ELLCCTSSFSSAKMLTAEPNTSL 401
              + +  +V+  L  +T  EL    +S S+A    AE NT L
Sbjct: 450 ILDSQV--IVTGNLDIST--ELGNVNNSISNALERLAESNTKL 488


>tr|Q15EP5|Q15EP5_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus GN=F PE=3 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTTIVWVIT 272
           ++ NC+++  R   PP +  QNY +    + RH   +L +D   L     +D T    I+
Sbjct: 390 VIANCKITTCRCTDPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDATYQKNIS 449

Query: 273 RCKTFL*KVVSCALKQNTL*ELLCCTSSFSSAKMLTAEPNTSL 401
              + +  +V+  L  +T  EL    +S S+A    AE NT L
Sbjct: 450 ILDSQV--IVTGNLDIST--ELGNVNNSISNALERLAESNTKL 488


>tr|Q5RIG3|Q5RIG3_DANRE Novel protein similar to vertebrate nuclear
           receptor coactivator 1 (NCOA1) (Fragment) OS=Danio rerio
           GN=ncoa1 PE=4 SV=1
          Length = 738

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 355 EDVQQRSSYSVFCFRAQDTTFQRKVLHRVITHTMVVS*V-HLAAKSGVSIKMVKSCR 188
           ED+ ++  Y+ F  +  + +  +K+LH V+TH M +S + H     G S+     C+
Sbjct: 290 EDLVRKCIYAFFQPQGNEPSHAKKLLHEVMTHGMAISPLYHFTLSDGTSLSAQTRCK 346


>tr|Q9QPS2|Q9QPS2_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus PE=3 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NCR++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCRITTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>tr|Q8V1Q5|Q8V1Q5_9PARA Fusion glycoprotein F0 (Fragment)
           OS=Newcastle disease virus PE=3 SV=1
          Length = 551

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NCR++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCRITTCRCADPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>tr|Q7T7S7|Q7T7S7_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus PE=3 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NCR++  R   PP +  QNY +    + RH   +L +D   L     +D T
Sbjct: 390 VIANCRITTCRCTDPPGIISQNYGEAVSLIDRHSCNVLSLDGITLRLSGEFDAT 443


>tr|Q15EL2|Q15EL2_9PARA Fusion glycoprotein F0 OS=Newcastle disease
           virus GN=F PE=3 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  ILTNCRLSPIRFPSPPCLCHQNYSDIFLQVSRHDFTIL-IDTPLLAAK*TYDTT 254
           ++ NC+++  R   PP +  QNY +    + RH   +L +D  +L     +D T
Sbjct: 390 VIANCKITTCRCTDPPGIISQNYGEAVSLIDRHSCNVLSLDGIILRLSGEFDAT 443