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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917653
Clone id YMU001_000103_G05
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGAGGGCTGTACATGATGAAGAAGCCACCAACGCTTAACAAGGAGAGCATGTGAATGC
ATCAGAAGGAAGCTAAGGAACTGACTCTTTTATCTTCTTGTTTACTTGACTGAGTTGGAT
GGAGAATTGTGCTCTTAAAGGTGATTCCTGCCGCATGGGTCGCTTAGTGTGAATAGCTCT
TACTTTCTGTGGGCTGCGCTCTTGTAATCGCCAGATTAGGATTAAGATCAGAAAACTTAG
GTTTAAAAAGTAGATGCTCAAGAGCTAATTTATACTGCTGCACATGAATCATGCCTTGTC
GTAGTATCCCAGCCATGACTAAGTTGTTTTACTTAACCCATTATAGAAATTTGCAGCTGT
TGAGGTAGATAAACTTCCAGTCACCGACGGTGCATGAAAGTTTGTGCTTCAATGTATACA
AATGATCGGTGGGTGAGCACATATATTTTGTGTGAAGTTTGACAAGCTTATCTGCTGACA
AGCTTGTGAAGTTGTCCAAA
■■Homology search results ■■ -
sp_hit_id Q755J9
Definition sp|Q755J9|VPS27_ASHGO Vacuolar protein sorting-associated protein 27 OS=Ashbya gossypii
Align length 47
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917653|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_G05.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q755J9|VPS27_ASHGO Vacuolar protein sorting-associated protei...    30   4.5  
sp|A6NK06|IRG1_HUMAN Immune-responsive gene 1 protein homolog OS...    30   5.7  
sp|Q6MTG1|MNMA_MYCMS tRNA-specific 2-thiouridylase mnmA OS=Mycop...    30   7.6  
sp|P54987|IRG1_MOUSE Immune-responsive gene 1 protein OS=Mus mus...    29   9.8  

>sp|Q755J9|VPS27_ASHGO Vacuolar protein sorting-associated protein
           27 OS=Ashbya gossypii GN=VPS27 PE=3 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -2

Query: 192 TRAQPTESKSYSH*ATHAAGITFKSTILHPTQSSKQEDKRVSSLASF 52
           T+ +PT  +SY+  +++AA +T    ILH TQSS  E+++  S+  F
Sbjct: 482 TQPEPTY-RSYARSSSNAAELT--PAILHTTQSSPMENRQSQSVTGF 525


>sp|A6NK06|IRG1_HUMAN Immune-responsive gene 1 protein homolog
           OS=Homo sapiens GN=IRG1 PE=2 SV=1
          Length = 481

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 386 FHAPSVTGSLSTSTAANFYNGLSKT 312
           FH PSV G+L ++ AA+ + GLS T
Sbjct: 158 FHPPSVVGTLGSAAAASKFLGLSST 182


>sp|Q6MTG1|MNMA_MYCMS tRNA-specific 2-thiouridylase mnmA
           OS=Mycoplasma mycoides subsp. mycoides SC GN=mnmA PE=3
           SV=1
          Length = 375

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 462 ADKLVKLHTKYMCSPTDHLYTLKHKLSCTVGDWKFI 355
           ADK VK +  Y+CS +D  Y   H  SC V D  +I
Sbjct: 268 ADKDVKKNILYVCSTSDQSYL--HSTSCLVNDINWI 301


>sp|P54987|IRG1_MOUSE Immune-responsive gene 1 protein OS=Mus
           musculus GN=Irg1 PE=2 SV=2
          Length = 488

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 386 FHAPSVTGSLSTSTAANFYNGLSKT 312
           FH PSV G+L ++ AA+ + GLS T
Sbjct: 158 FHPPSVVGTLGSAAAASKFLGLSLT 182
tr_hit_id Q5SE77
Definition tr|Q5SE77|Q5SE77_OSTTA Polyunsaturated fatty acid elongase 2 OS=Ostreococcus tauri
Align length 27
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917653|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_G05.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5SE77|Q5SE77_OSTTA Polyunsaturated fatty acid elongase 2 OS=...    33   9.3  
tr|Q011L6|Q011L6_OSTTA Polyunsaturated fatty acid elongase 2 (IS...    33   9.3  

>tr|Q5SE77|Q5SE77_OSTTA Polyunsaturated fatty acid elongase 2
           OS=Ostreococcus tauri PE=4 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 82  R*KSQFLSFLLMHSHALLVKRWWLLHH 2
           R K++ LSFL ++ HALL+  WWL+ H
Sbjct: 148 RKKTKQLSFLHVYHHALLIWAWWLVCH 174


>tr|Q011L6|Q011L6_OSTTA Polyunsaturated fatty acid elongase 2 (ISS)
           OS=Ostreococcus tauri GN=Ot09g02550 PE=4 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 82  R*KSQFLSFLLMHSHALLVKRWWLLHH 2
           R K++ LSFL ++ HALL+  WWL+ H
Sbjct: 148 RKKTKQLSFLHVYHHALLIWAWWLVCH 174