BP917662
Clone id YMU001_000103_H07
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000103_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATTGGAAGTAATATTATCACTTTGAGTGGATTACAGTAATTCCACCTTGTGTACACTGTT
CAAATAACTATATGCTACACCTTCCCCATGCATTTTCTTGTATAGTGATCTGAGAAAGCA
CTTTTGAACCAGGGGCTCTGAAAATGTGATATTCACAATCAGATTTGCTCAATCATTGCC
ATGAAAATTAAAGAAATCAAGCAAAATCAGCCACTTGGAAGGCAAGTGGCTCACATGAGC
ACCACCTTTGTTGCAGGACAGCCTTTGGAAAGGCTATAGCTTGCGTCGCAGCGCCTTCTT
TGGACAATGCTGCAGGATATTCACATTTAACATATTGTACATGCCCATGAAGTGTAAAAG
TTTTGCTTTCACCACTACAAAAGCTGTTGTCACCTAGGTGCTTGTCTCTCCAGGAAATCT
TGTAAAAATTCCTGCTGCATGTCAGGGGAGGGATGATTGTAAAGCTGATGTTGGAGCCGA
A
■■Homology search results ■■ -
sp_hit_id Q62674
Definition sp|Q62674|S28A1_RAT Sodium/nucleoside cotransporter 1 OS=Rattus norvegicus
Align length 40
Score (bit) 30.0
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917662|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_H07.
(458 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62674|S28A1_RAT Sodium/nucleoside cotransporter 1 OS=Rattus ... 30 5.0
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo sa... 27 6.3
sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 OS=Homo sa... 27 8.0

>sp|Q62674|S28A1_RAT Sodium/nucleoside cotransporter 1 OS=Rattus
norvegicus GN=Slc28a1 PE=2 SV=1
Length = 648

Score = 30.0 bits (66), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3

Query: 222 ASGSHEHHLCCRTAFGKAIACVAAPSLDNAAGYSHLTYCT 341
+S S E +LCCR F + + +LDN + + T CT
Sbjct: 609 SSSSFEVYLCCRQVFQSTSSEFSQVALDNCCRFYNHTVCT 648


>sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo
sapiens GN=KRTAP10-6 PE=2 SV=1
Length = 365

Score = 27.3 bits (59), Expect(2) = 6.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1

Query: 385 CCHLGACLSRKSCKNSCCMS 444
CC +C + SC+++CC S
Sbjct: 129 CCGDSSCCQQSSCQSACCTS 148



Score = 20.8 bits (42), Expect(2) = 6.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3

Query: 246 LCCRTAFGKAIACVA 290
+CC+T K + CV+
Sbjct: 113 VCCKTVCCKPVCCVS 127


>sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 OS=Homo
sapiens GN=KRTAP10-4 PE=2 SV=1
Length = 401

Score = 27.3 bits (59), Expect(2) = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1

Query: 385 CCHLGACLSRKSCKNSCCMS 444
CC +C + SC+++CC S
Sbjct: 129 CCGDSSCCQQSSCQSACCTS 148



Score = 20.4 bits (41), Expect(2) = 8.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3

Query: 246 LCCRTAFGKAIACV 287
+CC+T K + CV
Sbjct: 113 VCCKTVCCKPVCCV 126


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917662|Adiantum capillus-veneris mRNA, clone:
YMU001_000103_H07.
(458 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******