BP917666 |
Clone id |
YMU001_000104_A01 |
Library |
YMU01 |
Length |
513 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000104_A01. |
Accession |
BP917666 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGATGAGTGCACACATGCATACGAGGCCTGGTGAGTTCTAGAAGAAAATTTTAAAGCTAA AGCAAAACAAAGTAAAGTTAGCTTGAAAAGGCAACTTTACAAACTTACTATGCTCAAGGG GGAAGACATAGCGAGTTTGGTTAATAGGCTTAAAAGCATGATTACACAATTGACCTACAT TCAATGCGAAGTAGAAGAAGACGACAAAACTAGTGCACTTCCTTCCAACTACGCCCATAT TGTCACTATTCTTGAATAAAAGGAGCCAACTCTTGCACTTCAAGATGTGGTAAGCTCACT TCAGGTAGAAGAAAGGAAGCAGAAAAATCTACCTACACCGATAAATGGGGTTTTTATAGC AAGAGAAGGCAAATCATCCATAGATTTCATATCATCTTTCAATGTTCGAAAATGCTATGA CTGCGGTAAAATGGGTCATATAGCTAAAGACTTCTATATCAATAAATCTTGTAGCACTTG TGGAAAGAAGGACATCCTACTTCTAGGTGCTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
163 |
Score (bit) |
73.9 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917666|Adiantum capillus-veneris mRNA, clone: YMU001_000104_A01. (513 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 74 4e-13 sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 46 1e-04 sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga... 39 0.014 sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease viru... 37 0.054 sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN... 37 0.054 sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficienc... 36 0.12 sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency vi... 36 0.12 sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.20 sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.20 sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain... 35 0.20 sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain... 35 0.20 sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain... 35 0.20 sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ... 35 0.20 sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related... 35 0.20 sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency vi... 35 0.20 sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency vi... 35 0.20 sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein... 34 0.35 sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.35 sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.35 sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.35 sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.35 sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.35 sp|P12495|GAG_HV1Z2 Gag polyprotein OS=Human immunodeficiency vi... 34 0.35 sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency vi... 34 0.35 sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency vi... 34 0.35 sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency vi... 34 0.35 sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency vi... 34 0.35 sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.45 sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.45 sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficienc... 34 0.45
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 Length = 1328
Score = 73.9 bits (180), Expect = 4e-13 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 22/163 (13%) Frame = +2
Query: 29 W*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDK 208 W LE + +K +K+ LK+QLY L M +G + S +N +ITQL + ++EE+DK Sbjct: 85 WTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDK 144
Query: 209 T----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPIN-GVFIAREGK 373 ++LPS+Y ++ T + + T+ L+DV S+L + E+ +K P N G + EG+ Sbjct: 145 AILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKK---PENQGQALITEGR 201
Query: 374 SSIDFISSFN-----------------VRKCYDCGKMGHIAKD 451 SS N VR CY+C + GH +D Sbjct: 202 GRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRD 244
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 45.8 bits (107), Expect = 1e-04 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 23/163 (14%) Frame = +2
Query: 38 LEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDKTS- 214 L+ ++ K+ S+++L+++L L + + S + +I++L ++EE DK S Sbjct: 84 LDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISH 143
Query: 215 ---ALPSNYAHIVTILE*-KEPTLALQDVVSSLQVEERKQKN-----------------L 331 LPS Y I+T +E E L L V + L +E K KN Sbjct: 144 LLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNN 203
Query: 332 PTPINGVFIAREGKSSIDFISSFNVR-KCYDCGKMGHIAKDFY 457 T N +F R K F + + KC+ CG+ GHI KD + Sbjct: 204 NTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCF 246
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 Length = 172
Score = 38.9 bits (89), Expect = 0.014 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +2
Query: 323 KNLPTPIN-GVFIAREGKSSIDFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGK 487 + PT I G + G++ F+SS CY CG+ GH+AKD + +K+C CG+ Sbjct: 17 RECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGR 74
Score = 32.0 bits (71), Expect = 1.7 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%) Frame = +2
Query: 407 RKCYDCGKMGHIAKDFYINK-----SCSTCGK 487 + CY+CG+ GHIAKD K C CGK Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQCCYNCGK 98
Score = 32.0 bits (71), Expect = 1.7 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2
Query: 407 RKCYDCGKMGHIAKDFYINKSCSTCGK 487 +KCY CG+ GHI KD C CG+ Sbjct: 112 QKCYSCGEFGHIQKD-CTKVKCYRCGE 137
Score = 31.2 bits (69), Expect = 2.9 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +2
Query: 413 CYDCGKMGHIAK--DFYINKSCSTCGK 487 CY+CGK GH+A+ D + C +CG+ Sbjct: 93 CYNCGKPGHLARDCDHADEQKCYSCGE 119
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1 Length = 1432
Score = 37.0 bits (84), Expect = 0.054 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +2
Query: 365 EGKSSIDFISSFNVRKCYDCGKMGHIAKDFYINKSCSTCGK 487 E ++I+ V++CY CGK GHI +D N+ C CGK Sbjct: 354 EAFAAINVKGDGEVQRCYGCGKPGHIRRDCK-NQKCFKCGK 393
>sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN=gag PE=3 SV=1 Length = 436
Score = 37.0 bits (84), Expect = 0.054 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +2
Query: 365 EGKSSIDFISSFNVRKCYDCGKMGHIAKDFYINKSCSTCGK 487 E ++I+ V++CY CGK GHI +D N+ C CGK Sbjct: 354 EAFAAINVKGDGEVQRCYGCGKPGHIRRDCK-NQKCFKCGK 393
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 (isolate RF/HAT3 group M subtype B) GN=gag-pol PE=1 SV=3 Length = 1436
Score = 35.8 bits (81), Expect = 0.12 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +2
Query: 383 DFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGKK 490 +F + KC++CGK+GHIAK+ K C CGK+ Sbjct: 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKE 419
>sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency virus type 1 (isolate RF/HAT3 group M subtype B) GN=gag PE=3 SV=3 Length = 501
Score = 35.8 bits (81), Expect = 0.12 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +2
Query: 383 DFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGKK 490 +F + KC++CGK+GHIAK+ K C CGK+ Sbjct: 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKE 419
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 (isolate SE9173 group M subtype J) GN=gag-pol PE=3 SV=3 Length = 1432
Score = 35.0 bits (79), Expect = 0.20 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2
Query: 410 KCYDCGKMGHIAKDFYI--NKSCSTCGKK 490 KC++CGK GHIAK+ K C CGK+ Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKE 418
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 (isolate SE9280 group M subtype J) GN=gag-pol PE=3 SV=3 Length = 1432
Score = 35.0 bits (79), Expect = 0.20 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2
Query: 410 KCYDCGKMGHIAKDFYI--NKSCSTCGKK 490 KC++CGK GHIAK+ K C CGK+ Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKE 418
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3 SV=1 Length = 442
Score = 35.0 bits (79), Expect = 0.20 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2
Query: 407 RKCYDCGKMGHIAKDFYINKSCSTCGKK 490 +KCY+CGK GH+A+ C CGK+ Sbjct: 385 QKCYNCGKPGHLARQCRQGIICHHCGKR 412
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9AU17 |
Definition |
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense |
Align length |
163 |
Score (bit) |
72.0 |
E-value |
2.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917666|Adiantum capillus-veneris mRNA, clone: YMU001_000104_A01. (513 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4... 72 2e-11 tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE... 67 7e-10 tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK150... 64 4e-09 tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 60 6e-08 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 59 1e-07 tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 59 2e-07 tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprote... 58 2e-07 tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-co... 58 3e-07 tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-co... 58 3e-07 tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-co... 57 7e-07 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 56 1e-06 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 56 1e-06 tr|Q6XMP8|Q6XMP8_AEDAL AgCP7521-like protein (Fragment) OS=Aedes... 55 3e-06 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 54 3e-06 tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O... 53 8e-06 tr|B4N7F3|B4N7F3_DROWI GK19402 OS=Drosophila willistoni GN=GK194... 53 1e-05 tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ... 52 1e-05 tr|A5B8Q0|A5B8Q0_VITVI Putative uncharacterized protein OS=Vitis... 52 1e-05 tr|Q02900|Q02900_ARATH Orf 1 (Fragment) OS=Arabidopsis thaliana ... 51 3e-05 tr|Q9SJU6|Q9SJU6_ARATH Putative retroelement pol polyprotein OS=... 50 5e-05 tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop... 50 5e-05 tr|A7QTZ9|A7QTZ9_VITVI Chromosome undetermined scaffold_174, who... 50 5e-05 tr|A7PHV1|A7PHV1_VITVI Chromosome chr13 scaffold_17, whole genom... 50 5e-05 tr|Q2AA73|Q2AA73_ASPOF Polyprotein-like, related OS=Asparagus of... 50 6e-05 tr|Q9ZPU5|Q9ZPU5_ARATH Putative retroelement pol polyprotein OS=... 50 8e-05 tr|B6V6Z8|B6V6Z8_DROME Polyprotein OS=Drosophila melanogaster PE... 49 1e-04 tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element OS=A... 49 1e-04 tr|B3N452|B3N452_DROER GG10886 OS=Drosophila erecta GN=GG10886 P... 49 1e-04 tr|A5AYK3|A5AYK3_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis... 47 4e-04
>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4 SV=1 Length = 1328
Score = 72.0 bits (175), Expect = 2e-11 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 22/163 (13%) Frame = +2
Query: 29 W*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDK 208 W LE + +K +K+ LK+QLY L M +G + S +N L +ITQL + ++EE+DK Sbjct: 86 WTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDK 145
Query: 209 ----TSALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAR---- 364 ++LPS+Y + T + + ++ L+DV S+L + E+ +K P VFI Sbjct: 146 RIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKMRKK-PENHGQVFITESRGR 204
Query: 365 --------------EGKSSIDFISSFNVRKCYDCGKMGHIAKD 451 GKS + S R CY+C + GH +D Sbjct: 205 SYQRSSSNYGRSGARGKSKVR--SKSKARNCYNCDQPGHFKRD 245
>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4 SV=1 Length = 1298
Score = 66.6 bits (161), Expect = 7e-10 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 19/169 (11%) Frame = +2
Query: 2 DECTHAYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYI 181 +E A E W L ++AK+ +K+ LKR+LY L M + + +N L ++ +QLT + Sbjct: 72 EEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSL 131
Query: 182 QCEVEEDDKT----SALPSNYAHIVTILE*KEPT--LALQDVVSSLQVEERKQKNL-PTP 340 C++E ++ +LP +Y ++ L T L DV +++ EE ++KN Sbjct: 132 SCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQ 191
Query: 341 IN----GVFIAREGKSSIDFISSFNVRK--------CYDCGKMGHIAKD 451 +N G+S+ SS R CY+CGK GH+ KD Sbjct: 192 VNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKD 240
>tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK15001 PE=4 SV=1 Length = 1249
Score = 63.9 bits (154), Expect = 4e-09 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Frame = +2
Query: 8 CTHAYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQC 187 C A+EAW L + + K KVSL +L L M G+D+ S +N ++ QL Sbjct: 73 CLTAFEAWTRLRDVHQPKGPVRKVSLYNKLLSLRMTDGQDMPSYINGFSDVLDQLAGAGV 132
Query: 188 EVEEDDKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPING-- 349 ++ E+ +T S+LP Y + V +E ++ + + + L+ E +++ T NG Sbjct: 133 QINEELRTIILLSSLPPVYENFVVAIETRDDLPSFEILCIKLKEEAERKRLTVTKENGQE 192
Query: 350 VFIAREGKSSIDFISSFNVRK---CYDCGKMGHIAKDFYINKSCSTCGKKDI 496 F+A + ++ + R CY CG+ GH+ + CGK+ + Sbjct: 193 AFVAMQNRNRNQNARTQRNRSQITCYKCGRQGHVK---------AQCGKERV 235
>tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g29210 PE=4 SV=2 Length = 415
Score = 60.1 bits (144), Expect = 6e-08 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 16/159 (10%) Frame = +2
Query: 23 EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202 E W L +K+ SK+ LK+QLY L + + D+ V+ ++ L+ + +++++ Sbjct: 84 EIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143
Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEE--RKQKNLPTPINGVFIAR 364 DK +LP +Y H+VT L + T+ ++++SSL + R +KN T A Sbjct: 144 DKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEATK------AS 197
Query: 365 EGKSSI-----DFISSFNVRK-----CYDCGKMGHIAKD 451 +GKS + D + + K CY C + GHI ++ Sbjct: 198 QGKSLLVKDKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 236
>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 58.9 bits (141), Expect = 1e-07 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 22/172 (12%) Frame = +2
Query: 17 AYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVE 196 A E W L + ++ K+ +++ LKR+LY L M + + +N L ++ +QLT ++ Sbjct: 76 AKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIA 135
Query: 197 EDDKT----SALPSNYAHIVTILE*KE--PTLALQDVVSSLQVEERKQKNLP-------- 334 E+++ +LP +Y ++ + TL DV ++ EE ++KN Sbjct: 136 ENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQ 195
Query: 335 ----TPINGVFIAREGKSSIDFISSFNVR----KCYDCGKMGHIAKDFYINK 466 T G R S + S + R KCY CG GH+ K+ + NK Sbjct: 196 AEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKGHVKKECWNNK 247
>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4 SV=1 Length = 1305
Score = 58.5 bits (140), Expect = 2e-07 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 22/172 (12%) Frame = +2
Query: 17 AYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVE 196 A + W L + ++ K+ +++ LKR+LY M + + +N L +M QL+ + Sbjct: 76 AKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIG 135
Query: 197 EDDKT----SALPSNYAHIVTILE*KE--PTLALQDVVSSLQVEERKQKNLP-------- 334 E+++ +LP +Y +V + L+ DV ++ EE ++KN Sbjct: 136 ENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQ 195
Query: 335 ----TPINGVFIAREGKSSIDFISSFNVR----KCYDCGKMGHIAKDFYINK 466 T G R S + S + R KCY+CGK GH+ KD + NK Sbjct: 196 MEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNK 247
>tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprotein (Retrotransposon protein, putative, Ty1-copia subclass) OS=Oryza sativa subsp. japonica GN=OSJNBa0050H14.7 PE=4 SV=1 Length = 556
Score = 58.2 bits (139), Expect = 2e-07 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Frame = +2
Query: 23 EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202 E W L + +K+ SK+ LK+QLY L M + D+ V+ ++ L+ + +++++ Sbjct: 215 EIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 274
Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEE--RKQKNLPTPING----V 352 DK +LP ++ H+VT L + T+ ++++SSL + R +KN + + Sbjct: 275 DKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAESLL 334
Query: 353 FIAREGKSSIDFISSFNVRKCYDCGKMGHIAKD 451 A+ + S +CY C + GHI ++ Sbjct: 335 VKAKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 367
>tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12620 PE=4 SV=1 Length = 424
Score = 57.8 bits (138), Expect = 3e-07 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 14/157 (8%) Frame = +2
Query: 23 EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202 E W L + +K+ SK+ LK+QLY L M + D+ V+ ++ L+ + +++++ Sbjct: 84 EIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143
Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAREG 370 DK +LP +Y H+VTIL + T+ + + S L + R+ K N A + Sbjct: 144 DKAIILLCSLPPSYEHVVTILTHGKDTIKTEIISSLLARDLRRSKK-----NEAMEASQA 198
Query: 371 KSSI-----DFISSFNVRK-----CYDCGKMGHIAKD 451 +S + D + + K CY C + GHI ++ Sbjct: 199 ESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 235
>tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g15720 PE=4 SV=2 Length = 407
Score = 57.8 bits (138), Expect = 3e-07 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 12/133 (9%) Frame = +2
Query: 89 RQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDKT----SALPSNYAHIVTILE 256 ++LY L M +G D+ VN ++T L + EV+++DK +LP +Y H+VT L Sbjct: 91 QKLYGLKMQEGADLTVHVNVFNQLVTDLVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLT 150
Query: 257 *KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAREGKSSIDFISSFNVRK-------- 412 + T+ +D+ S+L ++ +KN G EG + + V+K Sbjct: 151 YGKETIKTKDITSALLARDQMRKNK----EGETSQAEGLLVKEDHAGHKVKKNKKKKMVQ 206
Query: 413 CYDCGKMGHIAKD 451 C+ C + GHI+++ Sbjct: 207 CFRCDEWGHISRE 219
>tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g36020 PE=4 SV=1 Length = 425
Score = 56.6 bits (135), Expect = 7e-07 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%) Frame = +2
Query: 23 EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202 E W L + +K+ SK+ LK+QLY L M + D+ V+ ++ L+ + +++++ Sbjct: 84 EIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143
Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPING------V 352 D +LP +Y H+VT L + T+ ++ +SSL + ++ N + + Sbjct: 144 DMAIILLCSLPPSYEHVVTTLMHGKDTVKTEEKISSLLARDLRRSNKNEAMEASQAESLL 203
Query: 353 FIAREGKSSIDFISSFNVRKCYDCGKMGHIAKD 451 A+ + S +CY C + GHI ++ Sbjct: 204 VKAKHDHEAGVSKSKDKGARCYKCHEFGHIRRN 236
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