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BP917666
Clone id YMU001_000104_A01
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGATGAGTGCACACATGCATACGAGGCCTGGTGAGTTCTAGAAGAAAATTTTAAAGCTAA
AGCAAAACAAAGTAAAGTTAGCTTGAAAAGGCAACTTTACAAACTTACTATGCTCAAGGG
GGAAGACATAGCGAGTTTGGTTAATAGGCTTAAAAGCATGATTACACAATTGACCTACAT
TCAATGCGAAGTAGAAGAAGACGACAAAACTAGTGCACTTCCTTCCAACTACGCCCATAT
TGTCACTATTCTTGAATAAAAGGAGCCAACTCTTGCACTTCAAGATGTGGTAAGCTCACT
TCAGGTAGAAGAAAGGAAGCAGAAAAATCTACCTACACCGATAAATGGGGTTTTTATAGC
AAGAGAAGGCAAATCATCCATAGATTTCATATCATCTTTCAATGTTCGAAAATGCTATGA
CTGCGGTAAAATGGGTCATATAGCTAAAGACTTCTATATCAATAAATCTTGTAGCACTTG
TGGAAAGAAGGACATCCTACTTCTAGGTGCTAT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 163
Score (bit) 73.9
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917666|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A01.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    74   4e-13
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    46   1e-04
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga...    39   0.014
sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease viru...    37   0.054
sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN...    37   0.054
sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficienc...    36   0.12 
sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency vi...    36   0.12 
sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficienc...    35   0.20 
sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficienc...    35   0.20 
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain...    35   0.20 
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain...    35   0.20 
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain...    35   0.20 
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ...    35   0.20 
sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related...    35   0.20 
sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency vi...    35   0.20 
sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency vi...    35   0.20 
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein...    34   0.35 
sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.35 
sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.35 
sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.35 
sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.35 
sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.35 
sp|P12495|GAG_HV1Z2 Gag polyprotein OS=Human immunodeficiency vi...    34   0.35 
sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency vi...    34   0.35 
sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency vi...    34   0.35 
sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency vi...    34   0.35 
sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency vi...    34   0.35 
sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.45 
sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.45 
sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficienc...    34   0.45 

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
 Frame = +2

Query: 29  W*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDK 208
           W  LE  + +K   +K+ LK+QLY L M +G +  S +N    +ITQL  +  ++EE+DK
Sbjct: 85  WTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDK 144

Query: 209 T----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPIN-GVFIAREGK 373
                ++LPS+Y ++ T +   + T+ L+DV S+L + E+ +K    P N G  +  EG+
Sbjct: 145 AILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKK---PENQGQALITEGR 201

Query: 374 SSIDFISSFN-----------------VRKCYDCGKMGHIAKD 451
                 SS N                 VR CY+C + GH  +D
Sbjct: 202 GRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRD 244


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
           GN=GIP PE=1 SV=3
          Length = 1409

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 23/163 (14%)
 Frame = +2

Query: 38  LEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDKTS- 214
           L+  ++ K+  S+++L+++L  L +     + S  +    +I++L     ++EE DK S 
Sbjct: 84  LDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISH 143

Query: 215 ---ALPSNYAHIVTILE*-KEPTLALQDVVSSLQVEERKQKN-----------------L 331
               LPS Y  I+T +E   E  L L  V + L  +E K KN                  
Sbjct: 144 LLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNN 203

Query: 332 PTPINGVFIAREGKSSIDFISSFNVR-KCYDCGKMGHIAKDFY 457
            T  N +F  R  K    F  +   + KC+ CG+ GHI KD +
Sbjct: 204 NTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCF 246


>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein
           OS=Gallus gallus GN=CNBP PE=2 SV=1
          Length = 172

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 323 KNLPTPIN-GVFIAREGKSSIDFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGK 487
           +  PT I  G  +   G++   F+SS     CY CG+ GH+AKD  +  +K+C  CG+
Sbjct: 17  RECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGR 74



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +2

Query: 407 RKCYDCGKMGHIAKDFYINK-----SCSTCGK 487
           + CY+CG+ GHIAKD    K      C  CGK
Sbjct: 67  KACYNCGRGGHIAKDCKEPKREREQCCYNCGK 98



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 407 RKCYDCGKMGHIAKDFYINKSCSTCGK 487
           +KCY CG+ GHI KD      C  CG+
Sbjct: 112 QKCYSCGEFGHIQKD-CTKVKCYRCGE 137



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 413 CYDCGKMGHIAK--DFYINKSCSTCGK 487
           CY+CGK GH+A+  D    + C +CG+
Sbjct: 93  CYNCGKPGHLARDCDHADEQKCYSCGE 119


>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus
           GN=gag-pol PE=3 SV=1
          Length = 1432

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 365 EGKSSIDFISSFNVRKCYDCGKMGHIAKDFYINKSCSTCGK 487
           E  ++I+      V++CY CGK GHI +D   N+ C  CGK
Sbjct: 354 EAFAAINVKGDGEVQRCYGCGKPGHIRRDCK-NQKCFKCGK 393


>sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus
           GN=gag PE=3 SV=1
          Length = 436

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 365 EGKSSIDFISSFNVRKCYDCGKMGHIAKDFYINKSCSTCGK 487
           E  ++I+      V++CY CGK GHI +D   N+ C  CGK
Sbjct: 354 EAFAAINVKGDGEVQRCYGCGKPGHIRRDCK-NQKCFKCGK 393


>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate RF/HAT3 group M subtype B)
           GN=gag-pol PE=1 SV=3
          Length = 1436

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 383 DFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGKK 490
           +F     + KC++CGK+GHIAK+      K C  CGK+
Sbjct: 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKE 419


>sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate RF/HAT3 group M subtype B) GN=gag PE=3
           SV=3
          Length = 501

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 383 DFISSFNVRKCYDCGKMGHIAKDFYI--NKSCSTCGKK 490
           +F     + KC++CGK+GHIAK+      K C  CGK+
Sbjct: 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKE 419


>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate SE9173 group M subtype J)
           GN=gag-pol PE=3 SV=3
          Length = 1432

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 410 KCYDCGKMGHIAKDFYI--NKSCSTCGKK 490
           KC++CGK GHIAK+      K C  CGK+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKE 418


>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate SE9280 group M subtype J)
           GN=gag-pol PE=3 SV=3
          Length = 1432

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 410 KCYDCGKMGHIAKDFYI--NKSCSTCGKK 490
           KC++CGK GHIAK+      K C  CGK+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKE 418


>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain
           KV1772) GN=gag PE=3 SV=1
          Length = 442

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 407 RKCYDCGKMGHIAKDFYINKSCSTCGKK 490
           +KCY+CGK GH+A+       C  CGK+
Sbjct: 385 QKCYNCGKPGHLARQCRQGIICHHCGKR 412
tr_hit_id Q9AU17
Definition tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense
Align length 163
Score (bit) 72.0
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917666|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A01.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4...    72   2e-11
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    67   7e-10
tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK150...    64   4e-09
tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-co...    60   6e-08
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    59   1e-07
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    59   2e-07
tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprote...    58   2e-07
tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-co...    58   3e-07
tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-co...    58   3e-07
tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-co...    57   7e-07
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    56   1e-06
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    56   1e-06
tr|Q6XMP8|Q6XMP8_AEDAL AgCP7521-like protein (Fragment) OS=Aedes...    55   3e-06
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    54   3e-06
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O...    53   8e-06
tr|B4N7F3|B4N7F3_DROWI GK19402 OS=Drosophila willistoni GN=GK194...    53   1e-05
tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ...    52   1e-05
tr|A5B8Q0|A5B8Q0_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|Q02900|Q02900_ARATH Orf 1 (Fragment) OS=Arabidopsis thaliana ...    51   3e-05
tr|Q9SJU6|Q9SJU6_ARATH Putative retroelement pol polyprotein OS=...    50   5e-05
tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop...    50   5e-05
tr|A7QTZ9|A7QTZ9_VITVI Chromosome undetermined scaffold_174, who...    50   5e-05
tr|A7PHV1|A7PHV1_VITVI Chromosome chr13 scaffold_17, whole genom...    50   5e-05
tr|Q2AA73|Q2AA73_ASPOF Polyprotein-like, related OS=Asparagus of...    50   6e-05
tr|Q9ZPU5|Q9ZPU5_ARATH Putative retroelement pol polyprotein OS=...    50   8e-05
tr|B6V6Z8|B6V6Z8_DROME Polyprotein OS=Drosophila melanogaster PE...    49   1e-04
tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element OS=A...    49   1e-04
tr|B3N452|B3N452_DROER GG10886 OS=Drosophila erecta GN=GG10886 P...    49   1e-04
tr|A5AYK3|A5AYK3_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04

>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4
           SV=1
          Length = 1328

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 22/163 (13%)
 Frame = +2

Query: 29  W*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDK 208
           W  LE  + +K   +K+ LK+QLY L M +G +  S +N L  +ITQL  +  ++EE+DK
Sbjct: 86  WTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDK 145

Query: 209 ----TSALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAR---- 364
                ++LPS+Y  + T +   + ++ L+DV S+L + E+ +K  P     VFI      
Sbjct: 146 RIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKMRKK-PENHGQVFITESRGR 204

Query: 365 --------------EGKSSIDFISSFNVRKCYDCGKMGHIAKD 451
                          GKS +   S    R CY+C + GH  +D
Sbjct: 205 SYQRSSSNYGRSGARGKSKVR--SKSKARNCYNCDQPGHFKRD 245


>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4
           SV=1
          Length = 1298

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
 Frame = +2

Query: 2   DECTHAYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYI 181
           +E   A E W  L   ++AK+  +K+ LKR+LY L M +   +   +N L ++ +QLT +
Sbjct: 72  EEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSL 131

Query: 182 QCEVEEDDKT----SALPSNYAHIVTILE*KEPT--LALQDVVSSLQVEERKQKNL-PTP 340
            C++E  ++      +LP +Y  ++  L     T  L   DV +++  EE ++KN     
Sbjct: 132 SCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQ 191

Query: 341 IN----GVFIAREGKSSIDFISSFNVRK--------CYDCGKMGHIAKD 451
           +N           G+S+    SS   R         CY+CGK GH+ KD
Sbjct: 192 VNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKD 240


>tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK15001
           PE=4 SV=1
          Length = 1249

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
 Frame = +2

Query: 8   CTHAYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQC 187
           C  A+EAW  L +  + K    KVSL  +L  L M  G+D+ S +N    ++ QL     
Sbjct: 73  CLTAFEAWTRLRDVHQPKGPVRKVSLYNKLLSLRMTDGQDMPSYINGFSDVLDQLAGAGV 132

Query: 188 EVEEDDKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPING-- 349
           ++ E+ +T    S+LP  Y + V  +E ++   + + +   L+ E  +++   T  NG  
Sbjct: 133 QINEELRTIILLSSLPPVYENFVVAIETRDDLPSFEILCIKLKEEAERKRLTVTKENGQE 192

Query: 350 VFIAREGKSSIDFISSFNVRK---CYDCGKMGHIAKDFYINKSCSTCGKKDI 496
            F+A + ++      +   R    CY CG+ GH+          + CGK+ +
Sbjct: 193 AFVAMQNRNRNQNARTQRNRSQITCYKCGRQGHVK---------AQCGKERV 235


>tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g29210 PE=4 SV=2
          Length = 415

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
 Frame = +2

Query: 23  EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202
           E W  L     +K+  SK+ LK+QLY L + +  D+   V+    ++  L+ +  +++++
Sbjct: 84  EIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143

Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEE--RKQKNLPTPINGVFIAR 364
           DK      +LP +Y H+VT L   + T+  ++++SSL   +  R +KN  T       A 
Sbjct: 144 DKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEATK------AS 197

Query: 365 EGKSSI-----DFISSFNVRK-----CYDCGKMGHIAKD 451
           +GKS +     D  +  +  K     CY C + GHI ++
Sbjct: 198 QGKSLLVKDKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 236


>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
           PE=4 SV=1
          Length = 1305

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 22/172 (12%)
 Frame = +2

Query: 17  AYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVE 196
           A E W  L + ++ K+  +++ LKR+LY L M +   +   +N L ++ +QLT    ++ 
Sbjct: 76  AKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIA 135

Query: 197 EDDKT----SALPSNYAHIVTILE*KE--PTLALQDVVSSLQVEERKQKNLP-------- 334
           E+++      +LP +Y  ++  +       TL   DV  ++  EE ++KN          
Sbjct: 136 ENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQ 195

Query: 335 ----TPINGVFIAREGKSSIDFISSFNVR----KCYDCGKMGHIAKDFYINK 466
               T   G    R    S +   S + R    KCY CG  GH+ K+ + NK
Sbjct: 196 AEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKGHVKKECWNNK 247


>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
           SV=1
          Length = 1305

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
 Frame = +2

Query: 17  AYEAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVE 196
           A + W  L + ++ K+  +++ LKR+LY   M +   +   +N L +M  QL+     + 
Sbjct: 76  AKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIG 135

Query: 197 EDDKT----SALPSNYAHIVTILE*KE--PTLALQDVVSSLQVEERKQKNLP-------- 334
           E+++      +LP +Y  +V  +        L+  DV  ++  EE ++KN          
Sbjct: 136 ENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQ 195

Query: 335 ----TPINGVFIAREGKSSIDFISSFNVR----KCYDCGKMGHIAKDFYINK 466
               T   G    R    S +   S + R    KCY+CGK GH+ KD + NK
Sbjct: 196 MEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNK 247


>tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprotein
           (Retrotransposon protein, putative, Ty1-copia subclass)
           OS=Oryza sativa subsp. japonica GN=OSJNBa0050H14.7 PE=4
           SV=1
          Length = 556

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
 Frame = +2

Query: 23  EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202
           E W  L   + +K+  SK+ LK+QLY L M +  D+   V+    ++  L+ +  +++++
Sbjct: 215 EIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 274

Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEE--RKQKNLPTPING----V 352
           DK      +LP ++ H+VT L   + T+  ++++SSL   +  R +KN     +     +
Sbjct: 275 DKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAESLL 334

Query: 353 FIAREGKSSIDFISSFNVRKCYDCGKMGHIAKD 451
             A+    +    S     +CY C + GHI ++
Sbjct: 335 VKAKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 367


>tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g12620 PE=4 SV=1
          Length = 424

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
 Frame = +2

Query: 23  EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202
           E W  L   + +K+  SK+ LK+QLY L M +  D+   V+    ++  L+ +  +++++
Sbjct: 84  EIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143

Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAREG 370
           DK      +LP +Y H+VTIL   + T+  + + S L  + R+ K      N    A + 
Sbjct: 144 DKAIILLCSLPPSYEHVVTILTHGKDTIKTEIISSLLARDLRRSKK-----NEAMEASQA 198

Query: 371 KSSI-----DFISSFNVRK-----CYDCGKMGHIAKD 451
           +S +     D  +  +  K     CY C + GHI ++
Sbjct: 199 ESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGHIRRN 235


>tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g15720 PE=4 SV=2
          Length = 407

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
 Frame = +2

Query: 89  RQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEEDDKT----SALPSNYAHIVTILE 256
           ++LY L M +G D+   VN    ++T L  +  EV+++DK      +LP +Y H+VT L 
Sbjct: 91  QKLYGLKMQEGADLTVHVNVFNQLVTDLVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLT 150

Query: 257 *KEPTLALQDVVSSLQVEERKQKNLPTPINGVFIAREGKSSIDFISSFNVRK-------- 412
             + T+  +D+ S+L   ++ +KN      G     EG    +  +   V+K        
Sbjct: 151 YGKETIKTKDITSALLARDQMRKNK----EGETSQAEGLLVKEDHAGHKVKKNKKKKMVQ 206

Query: 413 CYDCGKMGHIAKD 451
           C+ C + GHI+++
Sbjct: 207 CFRCDEWGHISRE 219


>tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g36020 PE=4 SV=1
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
 Frame = +2

Query: 23  EAW*VLEENFKAKAKQSKVSLKRQLYKLTMLKGEDIASLVNRLKSMITQLTYIQCEVEED 202
           E W  L   + +K+  SK+ LK+QLY L M +  D+   V+    ++  L+ +  +++++
Sbjct: 84  EIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 143

Query: 203 DKT----SALPSNYAHIVTILE*KEPTLALQDVVSSLQVEERKQKNLPTPING------V 352
           D       +LP +Y H+VT L   + T+  ++ +SSL   + ++ N    +        +
Sbjct: 144 DMAIILLCSLPPSYEHVVTTLMHGKDTVKTEEKISSLLARDLRRSNKNEAMEASQAESLL 203

Query: 353 FIAREGKSSIDFISSFNVRKCYDCGKMGHIAKD 451
             A+    +    S     +CY C + GHI ++
Sbjct: 204 VKAKHDHEAGVSKSKDKGARCYKCHEFGHIRRN 236