BP917675
Clone id YMU001_000104_A11
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGAAAACTAGTCTTCGTCAAATGGTCACGGTCCCAGGTCCAAATATCTTTTGTCCATTC
ATTATGTGATAGATTCATAGATTGTCATTGCTAATCTTATCTTTCAAATTGTGATGTACA
CAATGTGAATCTATCATAGTTTTTAATTTTTTTGTGGCTTTTAGAGGATGCTTTTGTGTA
TGGTTTCTTTGGGCCTCATGTCCTTGATGCTACTTGCATCCTCTAGAGGCTAATTGGTCC
TTGGGATGTATTTATGTAGATGCCCTGCTTGAAATGGGCAAGCGTGTAGGAGGGTGTTCT
TGGCTTGAGATAAACTCGTCAGTGGCTGTTCTGTCTCTCTGATTCAGCTCTAGCCGCAAG
GCACTAGACATGAAGTTGTGACATAGCATTGTGATACATAGACCAGATAAAATGCCCTGG
AAAGATAATGT
■■Homology search results ■■ -
sp_hit_id O96668
Definition sp|O96668|DTFA_DICDI Defective in tip formation protein A OS=Dictyostelium discoideum
Align length 106
Score (bit) 30.0
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917675|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A11.
(431 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O96668|DTFA_DICDI Defective in tip formation protein A OS=Dic... 30 4.2
sp|Q9Q3G5|CAPSD_TASV2 Capsid polyprotein OS=Turkey astrovirus 2 ... 30 4.2
sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial OS=... 30 5.5
sp|Q3ZBX6|RM03_BOVIN 39S ribosomal protein L3, mitochondrial OS=... 30 5.5
sp|P45053|OPPC_HAEIN Oligopeptide transport system permease prot... 29 7.1

>sp|O96668|DTFA_DICDI Defective in tip formation protein A
OS=Dictyostelium discoideum GN=dtfA PE=2 SV=2
Length = 1402

Score = 30.0 bits (66), Expect = 4.2
Identities = 21/106 (19%), Positives = 45/106 (42%)
Frame = -1

Query: 371 MSSALRLELNQRDRTATDEFISSQEHPPTRLPISSRAST*IHPKDQLASRGCK*HQGHEA 192
+SS ++ Q+ + + Q+ PP +P+ + + PK Q + Q E
Sbjct: 221 LSSQSLQQIQQKSKQPPPQQQQQQQPPPPPIPLLPQIHQQLKPKQQQEQQ-----QQQEQ 275

Query: 191 QRNHTQKHPLKATKKLKTMIDSHCVHHNLKDKISNDNL*IYHIMNG 54
Q+ T+ + ++LK + H D+ +D + + +I+ G
Sbjct: 276 QQQQTENERINELRRLKRKKEYH------NDEYKDDEIYLDNILKG 315


>sp|Q9Q3G5|CAPSD_TASV2 Capsid polyprotein OS=Turkey astrovirus 2
GN=ORF2 PE=3 SV=1
Length = 724

Score = 30.0 bits (66), Expect = 4.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1

Query: 377 NFMSSALRLELNQRDRTATDEFISS-QEHPPTRLPISSRAST*IHPKDQLASR 222
N + S + L+L Q TA E + + + P +PI S+ +HP+ L R
Sbjct: 150 NILGSVVFLDLEQEANTAGPESVDTIKARPHVEVPIGSKTVWKVHPRSALGPR 202


>sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial
OS=Homo sapiens GN=MRPL3 PE=1 SV=1
Length = 348

Score = 29.6 bits (65), Expect = 5.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3

Query: 309 LKPRTPSYTLAHFKQGIYINTSQGPISL*RMQVASRT*GPKKPYTKASSKSHKK 148
+KP TP Y AHF+ G Y++ + I V R +P T +K+H++
Sbjct: 187 IKPGTPLYA-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRR 239


>sp|Q3ZBX6|RM03_BOVIN 39S ribosomal protein L3, mitochondrial OS=Bos
taurus GN=MRPL3 PE=2 SV=1
Length = 348

Score = 29.6 bits (65), Expect = 5.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3

Query: 309 LKPRTPSYTLAHFKQGIYINTSQGPISL*RMQVASRT*GPKKPYTKASSKSHKK 148
+KP TP Y AHF+ G Y++ + I V R +P T +K+H++
Sbjct: 187 IKPGTPLYA-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRR 239


>sp|P45053|OPPC_HAEIN Oligopeptide transport system permease protein
oppC OS=Haemophilus influenzae GN=oppC PE=3 SV=1
Length = 311

Score = 29.3 bits (64), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1

Query: 401 LCITMLCHNFMSSALRLELNQRDR 330
LC+T+ C NF+ LR L+ +DR
Sbjct: 288 LCLTLFCFNFIGDGLRDALDPKDR 311


tr_hit_id Q9I9Q0
Definition tr|Q9I9Q0|Q9I9Q0_ONCMY PER1 (Fragment) OS=Oncorhynchus mykiss
Align length 41
Score (bit) 37.0
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917675|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A11.
(431 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9I9Q0|Q9I9Q0_ONCMY PER1 (Fragment) OS=Oncorhynchus mykiss GN... 37 0.49
tr|Q3JYK3|Q3JYK3_STRA1 Peptidase propeptide and YPEB domain prot... 34 4.2
tr|Q3DGJ1|Q3DGJ1_STRAG Putative uncharacterized protein OS=Strep... 34 4.2
tr|Q3D462|Q3D462_STRAG Putative uncharacterized protein OS=Strep... 34 4.2
tr|A4ATT4|A4ATT4_9FLAO Electron transfer flavoprotein (Beta subu... 34 4.2
tr|A3I5M4|A3I5M4_9BACI RNA polymerase sigma factor OS=Bacillus s... 34 4.2
tr|B1HRM5|B1HRM5_LYSSC RNA polymerase sigma-F factor (Stage II s... 33 5.5
tr|B2A8V7|B2A8V7_PODAN Predicted CDS Pa_1_7530 OS=Podospora anse... 33 7.1

>tr|Q9I9Q0|Q9I9Q0_ONCMY PER1 (Fragment) OS=Oncorhynchus mykiss
GN=Per1 PE=2 SV=1
Length = 137

Score = 37.0 bits (84), Expect = 0.49
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1

Query: 242 KDQLASRGCK*HQGHEAQRNHTQKHPLKATKKLKTMIDSHC 120
+D L++ GC ++ H+ R TQK LKA K+LK + + C
Sbjct: 20 QDPLSTSGCSSNEQHQTARVQTQKEMLKALKELKVRLPAEC 60


>tr|Q3JYK3|Q3JYK3_STRA1 Peptidase propeptide and YPEB domain protein
OS=Streptococcus agalactiae serotype Ia GN=SAK_2060 PE=4
SV=1
Length = 176

Score = 33.9 bits (76), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1

Query: 209 HQGHEAQRNHTQKHPLKATKKLKTMID 129
H+GH+ +H +KH LK K + T ID
Sbjct: 7 HEGHDKHHDHREKHSLKTLKNISTKID 33


>tr|Q3DGJ1|Q3DGJ1_STRAG Putative uncharacterized protein
OS=Streptococcus agalactiae CJB111 GN=SAM_2037 PE=4 SV=1
Length = 223

Score = 33.9 bits (76), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1

Query: 209 HQGHEAQRNHTQKHPLKATKKLKTMID 129
H+GH+ +H +KH LK K + T ID
Sbjct: 54 HEGHDKHHDHREKHSLKTLKNISTKID 80


>tr|Q3D462|Q3D462_STRAG Putative uncharacterized protein
OS=Streptococcus agalactiae H36B GN=SAI_2193 PE=4 SV=1
Length = 223

Score = 33.9 bits (76), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1

Query: 209 HQGHEAQRNHTQKHPLKATKKLKTMID 129
H+GH+ +H +KH LK K + T ID
Sbjct: 54 HEGHDKHHDHREKHSLKTLKNISTKID 80


>tr|A4ATT4|A4ATT4_9FLAO Electron transfer flavoprotein (Beta
subunit) OS=Flavobacteriales bacterium HTCC2170
GN=FB2170_17256 PE=4 SV=1
Length = 248

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1

Query: 416 GILSGLCITMLCHNFMSSALRLELNQRDRTATDEFISSQEHPPTRLPI 273
G++ G+ T+L NF+++ + LE+ + TAT E +E T LP+
Sbjct: 123 GMVPGILATLLGMNFVNTCIELEVEGNNATATREIDGGKEKLSTTLPL 170


>tr|A3I5M4|A3I5M4_9BACI RNA polymerase sigma factor OS=Bacillus sp.
B14905 GN=BB14905_02620 PE=3 SV=1
Length = 263

Score = 33.9 bits (76), Expect = 4.2
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1

Query: 350 ELNQRDRTATDEFISSQEHPPT 285
ELN + R ATDEFI EHPPT
Sbjct: 113 ELNFKIRHATDEFIKKNEHPPT 134


>tr|B1HRM5|B1HRM5_LYSSC RNA polymerase sigma-F factor (Stage II
sporulation protein AC) (Sporulation sigma factor)
OS=Lysinibacillus sphaericus (strain C3-41) GN=Bsph_1714
PE=4 SV=1
Length = 195

Score = 33.5 bits (75), Expect = 5.5
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1

Query: 350 ELNQRDRTATDEFISSQEHPPT 285
ELN + R ATDEFI EHPPT
Sbjct: 45 ELNFKIRHATDEFIKRNEHPPT 66


>tr|B2A8V7|B2A8V7_PODAN Predicted CDS Pa_1_7530 OS=Podospora anserina
PE=4 SV=1
Length = 7657

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3

Query: 306 KPRTPSYTLAHFKQGIYINTSQGPISL*RMQVASRT*GPKKPYTKASSKSHKKIKN 139
+PR+ S+TL G Y TS G +S + GP YT S K K+ K+
Sbjct: 4560 RPRSVSFTLEAISPGAYTPTSSGAMSPVTEHESEDASGPSSRYTLRSKKREKRKKS 4615