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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917676
Clone id YMU001_000104_A12
Library
Length 338
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCGATTGAAGGGAAGGCCGGGTTCCGAGAGGAACACTCAGCGAACCAACTTCCTTGGCC
GGGCGGGAAGTTAGCCATTTTCAGGGCCTCCGGCCCGCTTGCCCTGGGTGGCTCCGCATG
CTTTTAGTAGCCCTTTCATTTTTACCTTTACTTGTTTATGACAATATTTGCATAAGGCCA
AAGGCTTACTTATGACCTGTAGGTATTTAGCAATCAAGTCGCTCTGCGCCTTCGCTGTTG
AGAGCTTGCAGACACGACACAATGGATTTCCATTGGCCTTGCGTACTGGGCATCGTTTAT
TAAGCGAGAATGCAAGGCCCAAGGCAAAAACTTTGGAC
■■Homology search results ■■ -
sp_hit_id Q6J1I7
Definition sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus
Align length 64
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917676|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A12.
         (338 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus...    32   1.3  
sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN...    32   1.3  
sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis ...    31   1.7  
sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing...    31   1.7  
sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containi...    31   1.7  
sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containi...    31   1.7  
sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens GN...    30   2.9  
sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus G...    30   2.9  
sp|O88339|EPN1_RAT Epsin-1 OS=Rattus norvegicus GN=Epn1 PE=1 SV=1      29   6.4  
sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3         29   6.4  
sp|Q4KMQ1|CI075_HUMAN Uncharacterized protein C9orf75 OS=Homo sa...    29   6.4  
sp|Q6PBM7|FA76B_DANRE Protein FAM76B OS=Danio rerio GN=fam76b PE...    29   8.4  

>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus
           GN=Rnf166 PE=2 SV=1
          Length = 237

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 268 NPLCRVCKLSTAKAQSDLIAKYLQVISKPLALCKYCHKQVKV-KMKGLLKACGATQGKRA 92
           +PLC +C+L     + D      + +S   A C+ C+K+V + KM+  + +C   Q + A
Sbjct: 66  SPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMA 125

Query: 91  GGPE 80
             P+
Sbjct: 126 NCPK 129


>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus
           GN=Rnf166 PE=2 SV=1
          Length = 237

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 268 NPLCRVCKLSTAKAQSDLIAKYLQVISKPLALCKYCHKQVKV-KMKGLLKACGATQGKRA 92
           +PLC +C+L     + D      + +S   A C+ C+K+V + KM+  + +C   Q + A
Sbjct: 66  SPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMA 125

Query: 91  GGPE 80
             P+
Sbjct: 126 NCPK 129


>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis
           GN=rnf166 PE=2 SV=1
          Length = 241

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 268 NPLCRVCKLSTAKAQSDLIAKYLQVISKPLALCKYCHKQVKV-KMKGLLKACGATQGKRA 92
           +PLC +C++     + D  +   + +S   A C+ C K+V + KM+  + +C   Q + A
Sbjct: 70  SPLCPLCRMPFDPKKVDKASNVDKQLSSYKAPCRGCSKKVTLAKMRAHISSCPKVQEQMA 129

Query: 91  GGPE 80
             P+
Sbjct: 130 NCPK 133


>sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing
           protein 2 OS=Rattus norvegicus GN=Abtb2 PE=2 SV=1
          Length = 1009

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  GTLSEPTSLAGREVSHFQGLRPACPG 108
           G++SE + L  R + H QG  P CPG
Sbjct: 338 GSISELSDLVSRAMHHMQGRHPLCPG 363


>sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containing
           protein 2 OS=Mus musculus GN=Abtb2 PE=2 SV=1
          Length = 1024

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  GTLSEPTSLAGREVSHFQGLRPACPG 108
           G++SE + L  R + H QG  P CPG
Sbjct: 338 GSISELSDLVSRAMHHMQGRHPLCPG 363


>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing
           protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1
          Length = 839

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  GTLSEPTSLAGREVSHFQGLRPACPG 108
           G++SE + L  R + H QG  P CPG
Sbjct: 152 GSISELSDLVSRAMHHMQGRHPLCPG 177


>sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens
           GN=RNF166 PE=2 SV=1
          Length = 237

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 268 NPLCRVCKLSTAKAQSDLIAKYLQVISKPLALCKYCHKQVKV-KMKGLLKACGATQGKRA 92
           +PLC +C+L     + D      + +S   A C+ C+K+V + KM+  + +C   Q + A
Sbjct: 66  SPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMA 125

Query: 91  GGPE 80
             P+
Sbjct: 126 NCPK 129


>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus
           GN=RNF166 PE=2 SV=1
          Length = 244

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 268 NPLCRVCKLSTAKAQSDLIAKYLQVISKPLALCKYCHKQVKV-KMKGLLKACGATQGKRA 92
           +PLC +C++     + +  +   + +S   A C+ C K+V + KM+  + +C   Q + A
Sbjct: 73  SPLCPLCRMPFDPKKVEKASSVEKQLSSYKAPCRGCSKKVTLAKMRSHVSSCAKVQEQMA 132

Query: 91  GGPE 80
             P+
Sbjct: 133 NCPK 136


>sp|O88339|EPN1_RAT Epsin-1 OS=Rattus norvegicus GN=Epn1 PE=1 SV=1
          Length = 575

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 66  GS*PFSGPPARLPWVAPHAFSSPF 137
           G  P SGPP+  PW    AFS P+
Sbjct: 356 GGAPVSGPPSSDPWAPAPAFSDPW 379


>sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3
          Length = 575

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 66  GS*PFSGPPARLPWVAPHAFSSPF 137
           G  P SGPP+  PW    AFS P+
Sbjct: 356 GGAPVSGPPSSDPWAPAPAFSDPW 379
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917676|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_A12.
         (338 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******