| BP917683 |
| Clone id |
YMU001_000104_B07 |
| Library |
YMU01 |
| Length |
539 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000104_B07. |
| Accession |
BP917683 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
ACAATCCTTGACCTTGACCAAACTTGACTTCCCAATCACGATACCTTTCTTTTGCAAGCG
CCTCTATCGGAGCTATGTACACACACCTTACTGCACCTTTTTCAGACCCTTTGTCAAGCA
TTCTCATAACTGCAAATTCAGCAGAGATGGTTTTTCCACTACCTGTTGGTGCTGCAATAA
GAGCATTATCATCTGTATTGTATAACACAGTAAAGACCTGAGTCTGAACTGGGTTAAAGT
GCTTAAATTGTTGATATAGTGCTTCAAAGGCAGGATTCCTCAATGCAGACACAGGCAAAG
GCTGTAAGTCCAGAAGCTCTGTTGGTGGAGGATACTTCTCTGGCAATCTGAGATGGCGGA
ACGATACTGGTAACATCGTTTCTGACCCCAGCCATCTGTCTGATAACACACGAATAAAAT
ACTGAGGCGGCATAGGCTCAAAGATGGGCACAGTGAAACTCAGATTATGTTCCTCCTCAA
CATATTGCATCTTTAAGATAAAATATTCATGATGAAGAATGTGCTCCCCATCATTATCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O75643 |
| Definition |
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens |
| Align length |
174 |
| Score (bit) |
251.0 |
| E-value |
2.0e-66 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917683|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_B07.
(539 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa ... 251 2e-66
sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein... 227 2e-59
sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein... 206 4e-53
sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 complex s... 196 5e-50
sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosacc... 187 4e-47
sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharom... 162 7e-40
sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces ce... 159 8e-39
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharo... 112 9e-25
sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS... 74 3e-13
sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS... 72 1e-12
sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharo... 67 4e-11
sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus a... 53 1e-06
sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus h... 52 1e-06
sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus s... 50 9e-06
sp|Q10701|HELY_MYCTU Probable helicase helY OS=Mycobacterium tub... 49 2e-05
sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus f... 49 2e-05
sp|Q9ZBD8|HELY_MYCLE Probable helicase helY OS=Mycobacterium lep... 48 3e-05
sp|O59801|YJV3_SCHPO Uncharacterized helicase C550.03c OS=Schizo... 48 3e-05
sp|O27830|HELX_METTH Uncharacterized ATP-dependent helicase MTH_... 47 6e-05
sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L P... 47 8e-05
sp|O14232|YDVG_SCHPO Uncharacterized helicase C6F12.16c OS=Schiz... 46 1e-04
sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharo... 46 1e-04
sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula m... 45 2e-04
sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 ... 45 2e-04
sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldo... 45 3e-04
sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus t... 44 4e-04
sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus k... 44 4e-04
sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizo... 43 9e-04
sp|P30015|LHR_ECOLI Probable ATP-dependent helicase lhr OS=Esche... 43 9e-04
sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 ... 43 0.001
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 251 bits (641), Expect = 2e-66
Identities = 121/174 (69%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D D E ILHHEYF+LK +Y ++EH ++F VP+FEP+PPQYFIRV+SDRWL ET LPVSF
Sbjct: 1227 DVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 1286
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQ-QFKHFNPVQTQVFTVLYNTDDNA 182
RHL LPEKYPPPTELLDLQPLPVSALRN AFE+LYQ +F FNP+QTQVF +YN+DDN
Sbjct: 1287 RHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNV 1346
Query: 181 LIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKF 20
+ APTGSGKTI AEFA++RML + SE RCVYI P+EALA++ Y DW KF
Sbjct: 1347 FVGAPTGSGKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKF 1397
Score = 52.8 bits (125), Expect = 1e-06
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = -2
Query: 343 PEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPT 164
P+ + +LL ++ LP A +A ++ FK N +Q++++ TD+N L+ APT
Sbjct: 452 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 505
Query: 163 GSGKTISAEFAVMRMLDKGSEKGAV------RCVYIAPIEALAKE 47
G+GKT A ++R + K + +YIAP+ +L +E
Sbjct: 506 GAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200
kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2
SV=4
Length = 2142
Score = 227 bits (579), Expect = 2e-59
Identities = 107/175 (61%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D D E ILHHE+F+LK +Y ++EH L F VP+FEP+PPQYF+R++SDRW+G+ET LPVSF
Sbjct: 1227 DVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSF 1286
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALY-QQFKHFNPVQTQVFTVLYNTDDNA 182
RHL LPEK PPTELLDLQPLP+SALR P FE+ Y Q+F FNP+QTQVF +YN+D+N
Sbjct: 1287 RHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENV 1346
Query: 181 LIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFG 17
+ APTGSGK AEFA+MR+ S+ RCVY+ EALA + DW KFG
Sbjct: 1347 FVGAPTGSGKMTIAEFAIMRLFTTQSD---ARCVYLVSEEALADLVFADWHSKFG 1398
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/113 (28%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Frame = -2
Query: 361 FRHLRLPEKYPPPTELLD-LQPLPVSALRNPAF-EALYQQFKHFNPVQTQVFTVLYNTDD 188
+ + +P P P + + LQP+ + P + + +++ FK N +Q++++ ++D+
Sbjct: 442 YEEVHVPALKPVPFDANEELQPVD----KLPKYVQPVFEGFKTLNRIQSRLYKAALDSDE 497
Query: 187 NALIAAPTGSGKTISAEFAVMRMLDKG-SEKGAV-----RCVYIAPIEALAKE 47
N L+ APTG+GKT A +MR + K +E G + + +Y+AP+++L +E
Sbjct: 498 NMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQE 550
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200
kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=2
SV=1
Length = 2145
Score = 206 bits (525), Expect = 4e-53
Identities = 92/172 (53%), Positives = 129/172 (75%), Gaps = 2/172 (1%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D DGE ILHHE+F+LK ++ +EH + VP+F+PMPP Y++R++SDRW+G+ET+LP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQ--FKHFNPVQTQVFTVLYNTDDN 185
RHL LPEKYPPPTELLDLQPLP+SA+ N F+ ++ + FK FNP+QTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 184 ALIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWE 29
++ AP GSGKT AE AV+R + E + VYI P+E +A + Y DW+
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPE---AKAVYITPMEDMATKVYADWK 1388
Score = 44.3 bits (103), Expect = 4e-04
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Frame = -2
Query: 388 GSETMLPVSFRHLRLPEKYPPP----TELLDLQPLPVSALRNPAFEALYQQFKHFNPVQT 221
GS S+ + +P P P +L+ + LP A PAF+ +K N +Q+
Sbjct: 427 GSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWA--QPAFDG----YKSLNRIQS 480
Query: 220 QVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRMLDKG-SEKGAV-----RCVYIAPIEA 59
++ + ++ L+ APTG+GKT A +++ + +E G+V + VYIAP+++
Sbjct: 481 RLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKS 540
Query: 58 LAKE 47
L +E
Sbjct: 541 LVQE 544
>sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 complex
subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 196 bits (499), Expect = 5e-50
Identities = 98/180 (54%), Positives = 131/180 (72%), Gaps = 2/180 (1%)
Frame = -2
Query: 538 DNDGEHILHHEYFI-LKMQYVEEEHNLS-FTVPIFEPMPPQYFIRVLSDRWLGSETMLPV 365
D +HI H EYF+ LK Q + +E L FT+PIFEP+P QY+IR +SDRWLG+E + +
Sbjct: 1226 DPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCII 1285
Query: 364 SFRHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDN 185
+F+HL LPE++PP TELLDLQPLP++AL A+EALY F HFNPVQTQ+F LY+TD N
Sbjct: 1286 NFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCN 1344
Query: 184 ALIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQG 5
L+ APTGSGKT++AE A+ R+ +K + VYIAP++AL +ER DW+V+ + G
Sbjct: 1345 VLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLG 1401
Score = 60.5 bits (145), Expect = 5e-09
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Frame = -2
Query: 304 QPLPVSALRNPAF--------EALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKT 149
+P+P+S P + + ++ K N +Q+ VF YNT++N LI APTG+GKT
Sbjct: 447 EPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKT 506
Query: 148 ISAEFAVMRMLDKGSEKGAV-----RCVYIAPIEALAKE 47
A V+ + + ++G + + VY+AP++ALA E
Sbjct: 507 NIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE 545
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2
OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1
Length = 2176
Score = 187 bits (474), Expect = 4e-47
Identities = 89/173 (51%), Positives = 121/173 (69%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D DG+ +LH+E F L +Y ++EH ++FTVP+ EP+PP YFI+++SDRWL S T +P+SF
Sbjct: 1265 DVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSF 1324
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
+ L +PEK+P PT LLDLQ PVS+L NP+F +LY FK FN +QTQVF +Y T+D+
Sbjct: 1325 QRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVF 1384
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKF 20
I AP GSGKT+ AE A +L S++ VYIAPI+ + RY +W KF
Sbjct: 1385 IGAPNGSGKTVCAELA---LLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKF 1434
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Frame = -2
Query: 235 NPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRMLDKGSEKGA------VRCVYI 74
N +Q+ ++ + + TD+N L+ APTG+GKT A ++ L K + + VYI
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 73 APIEALAKE 47
AP++AL +E
Sbjct: 581 APLKALVQE 589
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces
pombe GN=mug81 PE=1 SV=1
Length = 1935
Score = 162 bits (411), Expect = 7e-40
Identities = 82/180 (45%), Positives = 116/180 (64%), Gaps = 1/180 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D++G ILHHE +L + V H LSFT+P+ P+P Q +I +SD+WLG+ET+ PVS
Sbjct: 1034 DSNGLEILHHEQLLLNKRNVSTSHLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSL 1093
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEAL-YQQFKHFNPVQTQVFTVLYNTDDNA 182
++ + P TELLDLQPLP++AL +P E + ++F FN VQTQ F +Y+TD N
Sbjct: 1094 SNVVFHDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNI 1153
Query: 181 LIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+ APTGSGKT++AE A R L + + VYIAP++AL KER +DW + + G+
Sbjct: 1154 FVGAPTGSGKTMAAELATWRALHNYPKS---KVVYIAPMKALVKERVKDWGHRLVEPMGI 1210
Score = 48.1 bits (113), Expect = 3e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Frame = -2
Query: 256 YQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAV----------MRMLDKG 107
+ ++ N +Q+ V+ + Y T++N LI APTG+GKT A A+ M ++D+
Sbjct: 272 FLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDES 331
Query: 106 S----EKGAVRCVYIAPIEALAKE 47
+ + VYIAP++ALA E
Sbjct: 332 EPLDVHRDDFKIVYIAPMKALAAE 355
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces
cerevisiae GN=SLH1 PE=1 SV=1
Length = 1967
Score = 159 bits (402), Expect = 8e-39
Identities = 78/172 (45%), Positives = 111/172 (64%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
++D ILH E FIL + + +H + F +P+ +P+PPQ ++V+SD W+G E+ +SF
Sbjct: 1041 ESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISF 1100
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
+HL P T+LL L+PLP SAL+NP E++Y FK+FNP+QT F LYNT++NA
Sbjct: 1101 QHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIY-PFKYFNPMQTMTFYTLYNTNENAF 1159
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVK 23
+ +PTGSGKTI AE A+ K + VYIAP++AL +ER DW K
Sbjct: 1160 VGSPTGSGKTIVAELAIWHAFKTFPGK---KIVYIAPMKALVRERVDDWRKK 1208
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = -2
Query: 247 FKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRMLDKGS----------EK 98
++ N +Q+ V+ V Y T++N LI APTG+GKT A ++ + + S +
Sbjct: 285 YETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQY 344
Query: 97 GAVRCVYIAPIEALAKE 47
+ +Y+AP++ALA E
Sbjct: 345 DDFKVIYVAPLKALAAE 361
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces
cerevisiae GN=BRR2 PE=1 SV=2
Length = 2163
Score = 112 bits (281), Expect = 9e-25
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 4/182 (2%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEP----MPPQYFIRVLSDRWLGSETML 371
D DG+ IL+++ + V E LSFT + + +PP +F+ ++S+ W SE +
Sbjct: 1245 DTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENWWHSEFEI 1304
Query: 370 PVSFRHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTD 191
PVSF +LP+K+PPPT LL+ + S L N F ++ +FK FN +Q+QVF LYN++
Sbjct: 1305 PVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVF-EFKTFNKIQSQVFESLYNSN 1363
Query: 190 DNALIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQG 11
D+ + + G+GKT AE A++ + KG R VYI P DW +F
Sbjct: 1364 DSVFVGSGKGTGKTAMAELALLNHWRQ--NKG--RAVYINPSGEKIDFLLSDWNKRFSHL 1419
Query: 10 QG 5
G
Sbjct: 1420 AG 1421
Score = 58.5 bits (140), Expect = 2e-08
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Frame = -2
Query: 355 HLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALI 176
H+ P K EL ++ LP AF + + NP+Q++VF + D N LI
Sbjct: 464 HIPAPSKPVIDYELKEITSLPDWC--QEAFPS--SETTSLNPIQSKVFHAAFEGDSNMLI 519
Query: 175 AAPTGSGKTISAEFAVMRMLD-------KGSEKGAVRCVYIAPIEALAKERYRDWE 29
APTGSGKT A V++ L K A + VYIAP++AL +E+ R+++
Sbjct: 520 CAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQ 575
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1
OS=Homo sapiens GN=HFM1 PE=1 SV=2
Length = 1435
Score = 74.3 bits (181), Expect = 3e-13
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = -2
Query: 268 FEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRMLDKGSEKGA- 92
F +++++F +FN +Q++ F L TD N +I APTGSGKT+ E A+ R+L +
Sbjct: 271 FRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLN 330
Query: 91 VRCVYIAPIEALAKERYRDWEVKFG 17
++ VY+API+AL +R+ DW+ KFG
Sbjct: 331 IKIVYMAPIKALCSQRFDDWKEKFG 355
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1
OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1
Length = 1336
Score = 72.4 bits (176), Expect = 1e-12
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = -2
Query: 268 FEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRMLDKGSEKGA- 92
F ++++F +FN +Q++ L +D N ++ APTGSGKT+ E A++R+L +
Sbjct: 140 FRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQVPMPWTN 199
Query: 91 VRCVYIAPIEALAKERYRDWEVKFG 17
V+ VY+API+AL +RY DW+ KFG
Sbjct: 200 VKIVYMAPIKALCGQRYDDWKAKFG 224
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RTW1 |
| Definition |
tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
179 |
| Score (bit) |
311.0 |
| E-value |
1.0e-83 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917683|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_B07.
(539 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella paten... 311 1e-83
tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genom... 305 1e-81
tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis... 305 1e-81
tr|Q9SYP1|Q9SYP1_ARATH F9H16.5 protein OS=Arabidopsis thaliana G... 289 6e-77
tr|A3A293|A3A293_ORYSJ Putative uncharacterized protein OS=Oryza... 281 2e-74
tr|A2WZV9|A2WZV9_ORYSI Putative uncharacterized protein OS=Oryza... 281 2e-74
tr|O48534|O48534_ARATH Putative ATP-dependent RNA helicase OS=Ar... 279 6e-74
tr|Q84MP1|Q84MP1_ORYSJ Putative Sec63 domain containing protein ... 271 1e-71
tr|Q00Z19|Q00Z19_OSTTA DNA polymerase theta/eta, DEAD-box superf... 254 2e-66
tr|Q6P4T2|Q6P4T2_MOUSE Activating signal cointegrator 1 complex ... 251 2e-65
tr|Q69ZZ3|Q69ZZ3_MOUSE MKIAA0788 protein (Fragment) OS=Mus muscu... 251 2e-65
tr|B8AJU4|B8AJU4_ORYSI Putative uncharacterized protein OS=Oryza... 251 2e-65
tr|A4FU77|A4FU77_HUMAN ASCC3L1 protein (Fragment) OS=Homo sapien... 251 2e-65
tr|B0S754|B0S754_DANRE Novel protein similar to vertebrate activ... 250 4e-65
tr|A7RH22|A7RH22_NEMVE Predicted protein OS=Nematostella vectens... 249 8e-65
tr|B7PL00|B7PL00_IXOSC Antiviral helicase Slh1, putative OS=Ixod... 238 2e-61
tr|A4S4L6|A4S4L6_OSTLU Predicted protein OS=Ostreococcus lucimar... 236 7e-61
tr|B6MTS4|B6MTS4_BRAFL Putative uncharacterized protein OS=Branc... 234 2e-60
tr|A8JI25|A8JI25_CHLRE RNA helicase, activating signal cointegra... 234 3e-60
tr|B4KYI7|B4KYI7_DROMO GI13421 OS=Drosophila mojavensis GN=GI134... 232 8e-60
tr|B4J3P7|B4J3P7_DROGR GH16760 OS=Drosophila grimshawi GN=GH1676... 232 8e-60
tr|B4LDY9|B4LDY9_DROVI GJ11781 OS=Drosophila virilis GN=GJ11781 ... 231 2e-59
tr|B6PM71|B6PM71_BRAFL Putative uncharacterized protein (Fragmen... 230 4e-59
tr|B3M9U8|B3M9U8_DROAN GF10367 OS=Drosophila ananassae GN=GF1036... 228 2e-58
tr|Q2M0I9|Q2M0I9_DROPS GA19239 OS=Drosophila pseudoobscura pseud... 228 2e-58
tr|B4QLR5|B4QLR5_DROSI GD12527 OS=Drosophila simulans GN=GD12527... 227 3e-58
tr|B4HIL1|B4HIL1_DROSE GM24458 OS=Drosophila sechellia GN=GM2445... 227 3e-58
tr|B4PD16|B4PD16_DROYA GE19803 OS=Drosophila yakuba GN=GE19803 P... 227 3e-58
tr|B3NDP3|B3NDP3_DROER GG13510 OS=Drosophila erecta GN=GG13510 P... 226 6e-58
tr|B4N718|B4N718_DROWI GK23638 OS=Drosophila willistoni GN=GK236... 226 8e-58
>tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_205535 PE=4 SV=1
Length = 2180
Score = 311 bits (798), Expect = 1e-83
Identities = 146/179 (81%), Positives = 164/179 (91%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF+LKMQYVEE+HNLSFTVPI+EP+PPQYF+RV+SDRWLGSET+LPVSF
Sbjct: 1257 DNDGENILHHEYFLLKMQYVEEDHNLSFTVPIYEPLPPQYFVRVVSDRWLGSETVLPVSF 1316
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKYPPPTELLDLQPLPVSALRNP++E LYQ+F+HFNP+QTQVF VLYNTDDN L
Sbjct: 1317 RHLILPEKYPPPTELLDLQPLPVSALRNPSYEVLYQKFRHFNPIQTQVFPVLYNTDDNVL 1376
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+AAPTGSGKTI AEFAV+RML KG G RCVYIAP+EALAKER RDWE KFG+ G+
Sbjct: 1377 VAAPTGSGKTICAEFAVLRMLQKGEAGG--RCVYIAPVEALAKERLRDWESKFGRTLGV 1433
Score = 53.5 bits (127), Expect = 7e-06
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = -2
Query: 355 HLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALI 176
HL+ P+ + EL+ + +P A PAF+ + K N VQ++V+ T +N L+
Sbjct: 479 HLK-PKPFAEGEELVKISDMPDWA--QPAFKGM----KSLNRVQSKVYETALFTSENLLL 531
Query: 175 AAPTGSGK------TISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKE 47
APTG+GK TI E + + LD + + + VY+AP++AL E
Sbjct: 532 CAPTGAGKTNVAMLTILHELGLRKQLDGTFDLSSFKIVYVAPMKALVAE 580
>tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001949001
PE=4 SV=1
Length = 2072
Score = 305 bits (781), Expect = 1e-81
Identities = 142/179 (79%), Positives = 164/179 (91%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF++K QY++E H L+FTVPI+EP+PPQYFIRV+SDRWLGS+++LPVSF
Sbjct: 1153 DNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSF 1212
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKYPPPTELLDLQPLPV+ALRNP++EALYQ+FKHFNP+QTQVFTVLYNTDDN L
Sbjct: 1213 RHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVL 1272
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+AAPTGSGKTI AEFA++R KGSE VR VYIAPIEALAKERYRDWE KFG+G G+
Sbjct: 1273 VAAPTGSGKTICAEFAILRNHQKGSE-SIVRAVYIAPIEALAKERYRDWERKFGRGLGM 1330
Score = 49.7 bits (117), Expect = 1e-04
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = -2
Query: 328 PPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGK- 152
P EL+ + +P A PAF+ + Q N VQ++V+ T +N L+ APTG+GK
Sbjct: 383 PGEELVKISAMPDWA--QPAFKGMTQ----LNRVQSKVYETALFTAENVLLCAPTGAGKT 436
Query: 151 -----TISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKE 47
TI + A+ R D + VY+AP++AL E
Sbjct: 437 NVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAE 476
>tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_042645 PE=4 SV=1
Length = 2144
Score = 305 bits (781), Expect = 1e-81
Identities = 142/179 (79%), Positives = 164/179 (91%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF++K QY++E H L+FTVPI+EP+PPQYFIRV+SDRWLGS+++LPVSF
Sbjct: 1225 DNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSF 1284
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKYPPPTELLDLQPLPV+ALRNP++EALYQ+FKHFNP+QTQVFTVLYNTDDN L
Sbjct: 1285 RHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVL 1344
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+AAPTGSGKTI AEFA++R KGSE VR VYIAPIEALAKERYRDWE KFG+G G+
Sbjct: 1345 VAAPTGSGKTICAEFAILRNHQKGSE-SIVRAVYIAPIEALAKERYRDWERKFGRGLGM 1402
Score = 49.7 bits (117), Expect = 1e-04
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = -2
Query: 328 PPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGK- 152
P EL+ + +P A PAF+ + Q N VQ++V+ T +N L+ APTG+GK
Sbjct: 455 PGEELVKISAMPDWA--QPAFKGMTQ----LNRVQSKVYETALFTAENVLLCAPTGAGKT 508
Query: 151 -----TISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKE 47
TI + A+ R D + VY+AP++AL E
Sbjct: 509 NVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAE 548
>tr|Q9SYP1|Q9SYP1_ARATH F9H16.5 protein OS=Arabidopsis thaliana
GN=At1g20960 PE=4 SV=1
Length = 2171
Score = 289 bits (740), Expect = 6e-77
Identities = 135/179 (75%), Positives = 158/179 (88%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE ILHHEYF+LK QY++E+H L FTVPIFEP+PPQYF+RV+SD+WLGSET+LPVSF
Sbjct: 1251 DNDGEKILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSF 1310
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKYPPPTELLDLQPLPV+ALRNP +E LYQ FKHFNPVQTQVFTVLYNT+DN L
Sbjct: 1311 RHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVL 1370
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+AAPTGSGKTI AEFA++R +G + +R VYIAP+EA+AKE++R WE KFG+G GL
Sbjct: 1371 VAAPTGSGKTICAEFAILRNHHEGPD-ATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGL 1428
Score = 45.4 bits (106), Expect = 0.002
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = -2
Query: 274 PAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMRML------D 113
PAF+ + Q N VQ++V+ +N L+ APTG+GKT A +++ L D
Sbjct: 497 PAFKGMQQ----LNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTD 552
Query: 112 KGSEKGAVRCVYIAPIEALAKE 47
G + VY+AP++AL E
Sbjct: 553 GTYNHGDYKIVYVAPMKALVAE 574
>tr|A3A293|A3A293_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_004915 PE=4 SV=1
Length = 2240
Score = 281 bits (718), Expect = 2e-74
Identities = 132/176 (75%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF++K QYV+E+H L+FTVPI+EP+PPQYFIRV+SD+WLGS+T+LPV F
Sbjct: 1325 DNDGENILHHEYFMVKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVCF 1384
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKY PPTELLDLQPLPV+ALRN +E LY FKHFNP+QTQVFTVLYNTDD+ L
Sbjct: 1385 RHLILPEKYAPPTELLDLQPLPVTALRNARYEGLYSAFKHFNPIQTQVFTVLYNTDDSVL 1444
Query: 178 IAAPTGSGKTISAEFAVMRMLDKG-SEKGAVRCVYIAPIEALAKERYRDWEVKFGQ 14
+AAPTGSGKTI AEFA++R K S + +R VYIAPIEALAKERYRDWE KFG+
Sbjct: 1445 VAAPTGSGKTICAEFAILRNHQKAVSGESNMRVVYIAPIEALAKERYRDWEQKFGE 1500
Score = 44.7 bits (104), Expect = 0.003
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Frame = -2
Query: 334 YPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSG 155
Y +++ + +P A PAF + Q N VQ++V+ DN L+ APTG+G
Sbjct: 555 YETGEKIVKISDMPEWA--QPAFAKMTQ----LNRVQSKVYETALFKPDNILLCAPTGAG 608
Query: 154 KTISAEFAVMRMLDKGSEKGA-----VRCVYIAPIEALAKE 47
KT A +++ + + G + VY+AP++AL E
Sbjct: 609 KTNVAVLTILQQIGLHMKDGVFDNTKYKIVYVAPMKALVAE 649
>tr|A2WZV9|A2WZV9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05501 PE=4 SV=1
Length = 2177
Score = 281 bits (718), Expect = 2e-74
Identities = 132/176 (75%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF++K QYV+E+H L+FTVPI+EP+PPQYFIRV+SD+WLGS+T+LPV F
Sbjct: 1262 DNDGENILHHEYFMVKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVCF 1321
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKY PPTELLDLQPLPV+ALRN +E LY FKHFNP+QTQVFTVLYNTDD+ L
Sbjct: 1322 RHLILPEKYAPPTELLDLQPLPVTALRNARYEGLYSAFKHFNPIQTQVFTVLYNTDDSVL 1381
Query: 178 IAAPTGSGKTISAEFAVMRMLDKG-SEKGAVRCVYIAPIEALAKERYRDWEVKFGQ 14
+AAPTGSGKTI AEFA++R K S + +R VYIAPIEALAKERYRDWE KFG+
Sbjct: 1382 VAAPTGSGKTICAEFAILRNHQKAVSGESNMRVVYIAPIEALAKERYRDWEQKFGE 1437
Score = 44.7 bits (104), Expect = 0.003
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Frame = -2
Query: 334 YPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSG 155
Y +++ + +P A PAF + Q N VQ++V+ DN L+ APTG+G
Sbjct: 492 YETGEKIVKISDMPEWA--QPAFAKMTQ----LNRVQSKVYETALFKPDNILLCAPTGAG 545
Query: 154 KTISAEFAVMRMLDKGSEKGA-----VRCVYIAPIEALAKE 47
KT A +++ + + G + VY+AP++AL E
Sbjct: 546 KTNVAVLTILQQIGLHMKDGVFDNTKYKIVYVAPMKALVAE 586
>tr|O48534|O48534_ARATH Putative ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g42270 PE=4 SV=1
Length = 2172
Score = 279 bits (714), Expect = 6e-74
Identities = 131/179 (73%), Positives = 155/179 (86%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE ILHHEYF+ K + ++E+H L+FTVPI EP+PPQYFIRV+SD+WL S T+LPVSF
Sbjct: 1252 DNDGEKILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSF 1311
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKYPPPTELLDLQPLPV ALRNP++E LYQ FKHFNPVQTQVFTVLYNT DN +
Sbjct: 1312 RHLILPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVV 1371
Query: 178 IAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQGQGL 2
+AAPTGSGKTI AEFA++R +G + A+R VYIAP+EA+AKE++RDWE KFG+G GL
Sbjct: 1372 VAAPTGSGKTICAEFAILRNHLEGPD-SAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGL 1429
Score = 48.1 bits (113), Expect = 3e-04
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Frame = -2
Query: 340 EKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTG 161
+K+ +L+ + LP A PAF + Q N VQ++V+ DN L+ APTG
Sbjct: 478 KKFDSNEKLVKISDLPEWA--QPAFRGMQQ----LNRVQSKVYGTALFKADNILLCAPTG 531
Query: 160 SGKTISAEFAVMRMLDKGSEKGAV------RCVYIAPIEALAKE 47
+GKT A ++ L G + VY+AP++AL E
Sbjct: 532 AGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAE 575
>tr|Q84MP1|Q84MP1_ORYSJ Putative Sec63 domain containing protein (U5
small nuclear ribonucleoprotein 200 kDa helicase,
putative) OS=Oryza sativa subsp. japonica
GN=OSJNBb0036F07.6 PE=4 SV=1
Length = 2144
Score = 271 bits (694), Expect = 1e-71
Identities = 126/176 (71%), Positives = 152/176 (86%), Gaps = 1/176 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DN G++ILHHEYF+LK QYV+E+H L+FTVPI+EP+PPQYFIRV+SD+WLGS+T+LPVSF
Sbjct: 1231 DNGGDNILHHEYFMLKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVSF 1290
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNAL 179
RHL LPEKY PPTEL+DLQPLPV+ALRN +E+LY FKHFNP+QTQVFT YN+DD+ L
Sbjct: 1291 RHLTLPEKYAPPTELIDLQPLPVTALRNARYESLYCAFKHFNPIQTQVFTASYNSDDSVL 1350
Query: 178 IAAPTGSGKTISAEFAVMRMLDKG-SEKGAVRCVYIAPIEALAKERYRDWEVKFGQ 14
+AAPTGSGKTI AEFA++R K S +R VY+APIEALAKERY+DWE KFG+
Sbjct: 1351 VAAPTGSGKTICAEFAILRNHQKAVSGDSNMRVVYVAPIEALAKERYKDWESKFGE 1406
Score = 43.5 bits (101), Expect = 0.007
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = -2
Query: 274 PAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPTGSGKTISAEFAVMR-----MLDK 110
PAF + Q N +Q++V+ DN ++ APTG+GKT A +++ M D
Sbjct: 503 PAFAGMTQ----LNRIQSKVYDTALFKPDNIILCAPTGAGKTNVAVLTILQQIGLHMKDG 558
Query: 109 GSEKGAVRCVYIAPIEALAKE 47
+ + VY+AP++AL E
Sbjct: 559 EFDNTKYKIVYVAPMKALVAE 579
>tr|Q00Z19|Q00Z19_OSTTA DNA polymerase theta/eta, DEAD-box
superfamily (ISS) OS=Ostreococcus tauri GN=Ot11g01350
PE=4 SV=1
Length = 1398
Score = 254 bits (649), Expect = 2e-66
Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
DNDGE+ILHHEYF+LK EEEH LSFTVP+ +P+PPQYFIRV+SD WLGSET++PVSF
Sbjct: 465 DNDGENILHHEYFLLKAHNAEEEHGLSFTVPLSDPLPPQYFIRVVSDTWLGSETVIPVSF 524
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQ-QFKHFNPVQTQVFTVLYNTDDNA 182
+HL LPEK PPPTELLDLQPLPVSAL++ F+ LY +F HFNP+QTQVF LY TD+NA
Sbjct: 525 KHLMLPEKNPPPTELLDLQPLPVSALKSDGFDKLYAGRFTHFNPIQTQVFQCLYKTDENA 584
Query: 181 LIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKFGQ 14
L+ APTGSGKT+ AEFA+MR L SE+G RCVY+AP E LA ERY DW +FG+
Sbjct: 585 LVGAPTGSGKTVCAEFAIMRSLT--SERGG-RCVYMAPTETLADERYDDWSERFGE 637
>tr|Q6P4T2|Q6P4T2_MOUSE Activating signal cointegrator 1 complex
subunit 3-like 1 OS=Mus musculus GN=Snrnp200 PE=1 SV=1
Length = 2136
Score = 251 bits (641), Expect = 2e-65
Identities = 121/174 (69%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Frame = -2
Query: 538 DNDGEHILHHEYFILKMQYVEEEHNLSFTVPIFEPMPPQYFIRVLSDRWLGSETMLPVSF 359
D D E ILHHEYF+LK +Y ++EH ++F VP+FEP+PPQYFIRV+SDRWL ET LPVSF
Sbjct: 1227 DVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 1286
Query: 358 RHLRLPEKYPPPTELLDLQPLPVSALRNPAFEALYQ-QFKHFNPVQTQVFTVLYNTDDNA 182
RHL LPEKYPPPTELLDLQPLPVSALRN AFE+LYQ +F FNP+QTQVF +YN+DDN
Sbjct: 1287 RHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNV 1346
Query: 181 LIAAPTGSGKTISAEFAVMRMLDKGSEKGAVRCVYIAPIEALAKERYRDWEVKF 20
+ APTGSGKTI AEFA++RML + SE RCVYI P+EALA++ Y DW KF
Sbjct: 1347 FVGAPTGSGKTICAEFAILRMLLQNSEG---RCVYITPMEALAEQVYMDWYEKF 1397
Score = 52.8 bits (125), Expect = 1e-05
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = -2
Query: 343 PEKYPPPTELLDLQPLPVSALRNPAFEALYQQFKHFNPVQTQVFTVLYNTDDNALIAAPT 164
P+ + +LL ++ LP A +A ++ FK N +Q++++ TD+N L+ APT
Sbjct: 452 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 505
Query: 163 GSGKTISAEFAVMRMLDKGSEKGAV------RCVYIAPIEALAKE 47
G+GKT A ++R + K + +YIAP+ +L +E
Sbjct: 506 GAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
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