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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917690
Clone id YMU001_000104_C03
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTCAACAGTATATGTATTGTATATGTCACCAAAGGGACTGCACATTTTGCAGCCCCGA
AGAAATGTTAAGCCTTACTCTCTATATCAACAGTGCAATCCCGCCCAATGTGGCAAAAAG
AGTGTCGTCGAAGAAAAAAGACACTCCCAATAATAGACTTCCTACATCACATGCTTGGAA
GCAGGGCTTCCTTAGCATGCAGAAAAATGGATGAATGATACAAGGATCCAACTATGTTTG
ACGATGCCACCATTCTTGCCCCAGCCTTAAATGTCTGTGAACGCAACTGTTAATTACCCG
CTTACATTCACTGGGCCGCCCATTGTGGCACACACAATTTAAGAAAGCTTGTGAGCAGCT
CACTGTATTTGTCTGGAAACGTCCTAAAATGGTCGACATGCGGTGAGCATTGAAAGTTGC
ACGCCTTCACCATATGCCCGGCCTTCCTCTGCTCTTCAATAAAAGATTCGACCGATTTTG
CAGGAATCACAATGTCCGCACTACTATAAATGTACAACTGAGGACAGGCGGGTTGTTGAC
TTGCTA
■■Homology search results ■■ -
sp_hit_id Q6DJC8
Definition sp|Q6DJC8|TM53B_XENLA Transmembrane protein 53-B OS=Xenopus laevis
Align length 65
Score (bit) 65.5
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917690|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_C03.
         (546 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DJC8|TM53B_XENLA Transmembrane protein 53-B OS=Xenopus laev...    65   2e-10
sp|Q5PPS7|TM53A_XENLA Transmembrane protein 53-A OS=Xenopus laev...    64   4e-10
sp|Q9D0Z3|TMM53_MOUSE Transmembrane protein 53 OS=Mus musculus G...    56   1e-07
sp|Q2TBP5|TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus GN=...    54   4e-07
sp|Q6P2H8|TMM53_HUMAN Transmembrane protein 53 OS=Homo sapiens G...    54   5e-07
sp|Q6DHN0|TMM53_DANRE Transmembrane protein 53 OS=Danio rerio GN...    50   5e-06

>sp|Q6DJC8|TM53B_XENLA Transmembrane protein 53-B OS=Xenopus laevis
           GN=tmem53-B PE=2 SV=1
          Length = 285

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           PQLY+YS AD +I    VES I  +R+     +A +F  S HV HFR FP +YSE+ TSF
Sbjct: 205 PQLYLYSRADPIISYIDVESMIAARRRCCLPTEALDFGKSEHVSHFRRFPHRYSEMCTSF 264

Query: 343 LKLCV 329
           L+ CV
Sbjct: 265 LRDCV 269


>sp|Q5PPS7|TM53A_XENLA Transmembrane protein 53-A OS=Xenopus laevis
           GN=tmem53-A PE=2 SV=1
          Length = 285

 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 41/65 (63%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           PQLY+YS AD +I    VES I  +R+     +  +F  S HV HFR FP +YSE+ TSF
Sbjct: 205 PQLYLYSRADPIISYLDVESMIAARRRRCLPTETLDFGKSEHVSHFRRFPQRYSEICTSF 264

Query: 343 LKLCV 329
           L+ CV
Sbjct: 265 LRDCV 269


>sp|Q9D0Z3|TMM53_MOUSE Transmembrane protein 53 OS=Mus musculus
           GN=Tmem53 PE=2 SV=1
          Length = 276

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 26/65 (40%), Positives = 37/65 (56%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           P+LY+YS AD V+ A+ VE  +E +     MV+  +F  S HV H R +P  Y+ L   F
Sbjct: 210 PELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDF 269

Query: 343 LKLCV 329
           +  CV
Sbjct: 270 MHNCV 274


>sp|Q2TBP5|TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus
           GN=TMEM53 PE=2 SV=1
          Length = 294

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           P+LY+YS AD V+ A+ VE  +E +     +V++ +F  S HV H R +P  Y+ L  +F
Sbjct: 212 PELYLYSRADEVVLARDVERMVEARLAHQVLVRSVDFVSSAHVSHLRDYPTYYTTLCINF 271

Query: 343 LKLCV 329
           +  CV
Sbjct: 272 MHSCV 276


>sp|Q6P2H8|TMM53_HUMAN Transmembrane protein 53 OS=Homo sapiens
           GN=TMEM53 PE=2 SV=1
          Length = 277

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           P+LY+YS AD V+ A+ +E  +E +     + ++ +F  S HV H R +P  Y+ L   F
Sbjct: 211 PELYLYSRADEVVLARDIERMVEARLARRVLARSVDFVSSAHVSHLRDYPTYYTSLCVDF 270

Query: 343 LKLCV 329
           ++ CV
Sbjct: 271 MRNCV 275


>sp|Q6DHN0|TMM53_DANRE Transmembrane protein 53 OS=Danio rerio
           GN=tmem53 PE=2 SV=1
          Length = 281

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = -3

Query: 523 PQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSELLTSF 344
           PQ+Y+YS AD VI  + VE  ++  ++ G MV++ +F    HV  FR  P+ YS    +F
Sbjct: 205 PQMYLYSRADRVIRYRDVEKMVKGLQEKGLMVESFDFITPAHVSLFRDCPEDYSNRCRTF 264

Query: 343 LKLCV 329
           L  C+
Sbjct: 265 LSHCM 269
tr_hit_id Q5Z419
Definition tr|Q5Z419|Q5Z419_ORYSJ Integral membrane protein-like (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 72
Score (bit) 106.0
E-value 9.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917690|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_C03.
         (546 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5Z419|Q5Z419_ORYSJ Integral membrane protein-like (Putative ...   106   9e-22
tr|Q0D9A4|Q0D9A4_ORYSJ Os06g0730300 protein OS=Oryza sativa subs...   106   9e-22
tr|B8B2X4|B8B2X4_ORYSI Putative uncharacterized protein OS=Oryza...   106   9e-22
tr|A9RHZ3|A9RHZ3_PHYPA Predicted protein (Fragment) OS=Physcomit...   105   1e-21
tr|B7ZYY8|B7ZYY8_MAIZE Putative uncharacterized protein OS=Zea m...   102   2e-20
tr|A9SYE7|A9SYE7_PHYPA Predicted protein (Fragment) OS=Physcomit...   102   2e-20
tr|B6SSS6|B6SSS6_MAIZE Putative uncharacterized protein OS=Zea m...   101   2e-20
tr|Q9LHE8|Q9LHE8_ARATH Arabidopsis thaliana genomic DNA, chromos...    97   6e-19
tr|A7QPZ3|A7QPZ3_VITVI Chromosome undetermined scaffold_139, who...    97   6e-19
tr|B4F8H5|B4F8H5_MAIZE Putative uncharacterized protein OS=Zea m...    89   1e-16
tr|Q6Z6I1|Q6Z6I1_ORYSJ Os02g0133900 protein OS=Oryza sativa subs...    87   8e-16
tr|B8AHG3|B8AHG3_ORYSI Putative uncharacterized protein OS=Oryza...    87   8e-16
tr|A7PUS9|A7PUS9_VITVI Chromosome chr4 scaffold_32, whole genome...    87   8e-16
tr|Q8S8G6|Q8S8G6_ARATH Expressed protein (At2g18245) OS=Arabidop...    85   2e-15
tr|Q8LG51|Q8LG51_ARATH Putative uncharacterized protein OS=Arabi...    85   2e-15
tr|B7ZTV3|B7ZTV3_XENTR Putative uncharacterized protein LOC10013...    65   3e-09
tr|A9JSB6|A9JSB6_XENTR LOC100135126 protein OS=Xenopus tropicali...    65   3e-09
tr|B5X6E4|B5X6E4_SALSA Transmembrane protein 53 OS=Salmo salar G...    61   3e-08
tr|Q4SNP0|Q4SNP0_TETNG Chromosome 15 SCAF14542, whole genome sho...    61   4e-08
tr|B5X6W6|B5X6W6_SALSA Transmembrane protein 53 OS=Salmo salar G...    60   8e-08
tr|A8WVS3|A8WVS3_CAEBR Putative uncharacterized protein OS=Caeno...    60   8e-08
tr|Q9TZH8|Q9TZH8_CAEEL Putative uncharacterized protein OS=Caeno...    60   1e-07
tr|B5XC70|B5XC70_SALSA Transmembrane protein 53 OS=Salmo salar G...    57   6e-07
tr|Q29K25|Q29K25_DROPS GA20925 OS=Drosophila pseudoobscura pseud...    57   8e-07
tr|B4KFU5|B4KFU5_DROMO GI11705 OS=Drosophila mojavensis GN=GI117...    57   8e-07
tr|B4GXC7|B4GXC7_DROPE GL21136 OS=Drosophila persimilis GN=GL211...    57   8e-07
tr|B4NZC3|B4NZC3_DROYA GE20516 OS=Drosophila yakuba GN=GE20516 P...    56   1e-06
tr|A8XGA4|A8XGA4_CAEBR Putative uncharacterized protein OS=Caeno...    56   1e-06
tr|B6LFJ2|B6LFJ2_BRAFL Putative uncharacterized protein (Fragmen...    55   2e-06
tr|B6LFJ0|B6LFJ0_BRAFL Putative uncharacterized protein OS=Branc...    55   2e-06

>tr|Q5Z419|Q5Z419_ORYSJ Integral membrane protein-like (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=B1206D04.6 PE=4 SV=1
          Length = 422

 Score =  106 bits (264), Expect = 9e-22
 Identities = 48/72 (66%), Positives = 60/72 (83%)
 Frame = -3

Query: 544 ASQQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKY 365
           +S+QP CPQLYIYSSAD VIPAKSVESF+E QR+AGH V+AC+F  SPHVDH+R+ P+ Y
Sbjct: 336 SSKQPKCPQLYIYSSADRVIPAKSVESFVESQRRAGHEVRACDFVSSPHVDHYRSNPELY 395

Query: 364 SELLTSFLKLCV 329
           +  LT F++ CV
Sbjct: 396 TSQLTEFMEDCV 407


>tr|Q0D9A4|Q0D9A4_ORYSJ Os06g0730300 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0730300 PE=2 SV=1
          Length = 423

 Score =  106 bits (264), Expect = 9e-22
 Identities = 48/72 (66%), Positives = 60/72 (83%)
 Frame = -3

Query: 544 ASQQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKY 365
           +S+QP CPQLYIYSSAD VIPAKSVESF+E QR+AGH V+AC+F  SPHVDH+R+ P+ Y
Sbjct: 337 SSKQPKCPQLYIYSSADRVIPAKSVESFVESQRRAGHEVRACDFVSSPHVDHYRSNPELY 396

Query: 364 SELLTSFLKLCV 329
           +  LT F++ CV
Sbjct: 397 TSQLTEFMEDCV 408


>tr|B8B2X4|B8B2X4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24547 PE=4 SV=1
          Length = 412

 Score =  106 bits (264), Expect = 9e-22
 Identities = 48/72 (66%), Positives = 60/72 (83%)
 Frame = -3

Query: 544 ASQQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKY 365
           +S+QP CPQLYIYSSAD VIPAKSVESF+E QR+AGH V+AC+F  SPHVDH+R+ P+ Y
Sbjct: 326 SSKQPKCPQLYIYSSADRVIPAKSVESFVESQRRAGHEVRACDFVSSPHVDHYRSNPELY 385

Query: 364 SELLTSFLKLCV 329
           +  LT F++ CV
Sbjct: 386 TSQLTEFMEDCV 397


>tr|A9RHZ3|A9RHZ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23940 PE=4 SV=1
          Length = 278

 Score =  105 bits (263), Expect = 1e-21
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = -3

Query: 538 QQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSE 359
           +QPACPQLYIYS+AD VIP K+VE+FIEEQRK+G +V+ACN Q SPHVDHFR+ P  YSE
Sbjct: 211 KQPACPQLYIYSTADKVIPVKAVEAFIEEQRKSGRVVRACNLQSSPHVDHFRSHPQVYSE 270

Query: 358 LLTSFLK 338
            L++FLK
Sbjct: 271 QLSNFLK 277


>tr|B7ZYY8|B7ZYY8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 309

 Score =  102 bits (253), Expect = 2e-20
 Identities = 48/70 (68%), Positives = 57/70 (81%)
 Frame = -3

Query: 538 QQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSE 359
           +QP CPQLYIYSSAD VIPAKSVE+FI+ QRKAGH V+AC+F  SPHVDH+R+ P  YS 
Sbjct: 229 KQPKCPQLYIYSSADRVIPAKSVEAFIDGQRKAGHEVRACDFVSSPHVDHYRSNPGLYSS 288

Query: 358 LLTSFLKLCV 329
            L +FL+ CV
Sbjct: 289 QLANFLEDCV 298


>tr|A9SYE7|A9SYE7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_14500 PE=4 SV=1
          Length = 277

 Score =  102 bits (253), Expect = 2e-20
 Identities = 46/66 (69%), Positives = 56/66 (84%)
 Frame = -3

Query: 538 QQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSE 359
           +QP CPQLYIYS+AD VIP K+VE+FI++QRKAG +V+ACN Q SPHVDHFR+ P  YSE
Sbjct: 212 KQPPCPQLYIYSTADKVIPVKAVEAFIDDQRKAGRVVRACNLQSSPHVDHFRSHPQLYSE 271

Query: 358 LLTSFL 341
            L+SFL
Sbjct: 272 QLSSFL 277


>tr|B6SSS6|B6SSS6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 419

 Score =  101 bits (252), Expect = 2e-20
 Identities = 48/70 (68%), Positives = 57/70 (81%)
 Frame = -3

Query: 538 QQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSE 359
           +QP CPQLYIYSSAD VIPAKSVE+FI+ QRKAGH V+AC+F  SPHVDH+R+ P  YS 
Sbjct: 339 KQPKCPQLYIYSSADRVIPAKSVEAFIDCQRKAGHEVRACDFVSSPHVDHYRSNPGLYSS 398

Query: 358 LLTSFLKLCV 329
            L +FL+ CV
Sbjct: 399 QLANFLEECV 408


>tr|Q9LHE8|Q9LHE8_ARATH Arabidopsis thaliana genomic DNA, chromosome
           3, P1 clone: MZE19 (At3g19970/MZE19_2) OS=Arabidopsis
           thaliana GN=At3g19970 PE=2 SV=1
          Length = 434

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 45/68 (66%), Positives = 54/68 (79%)
 Frame = -3

Query: 544 ASQQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKY 365
           ++ QP+CPQLYIYSSAD VIP + VESFI EQRKAGH V+ACNF  SPHVDHFR+ P+ Y
Sbjct: 355 STAQPSCPQLYIYSSADRVIPVEQVESFIVEQRKAGHEVRACNFISSPHVDHFRSNPELY 414

Query: 364 SELLTSFL 341
           +  L  F+
Sbjct: 415 TAELNHFM 422


>tr|A7QPZ3|A7QPZ3_VITVI Chromosome undetermined scaffold_139, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00003135001 PE=4 SV=1
          Length = 442

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 47/65 (72%), Positives = 51/65 (78%)
 Frame = -3

Query: 535 QPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKYSEL 356
           QP CPQLYIYSSAD VIPA SVE+FIEEQRKAG  V+ACNF  +PHVDHFR  P  Y+  
Sbjct: 366 QPNCPQLYIYSSADRVIPAGSVETFIEEQRKAGREVRACNFISTPHVDHFRNDPKLYTSQ 425

Query: 355 LTSFL 341
           LT FL
Sbjct: 426 LTQFL 430


>tr|B4F8H5|B4F8H5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 383

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 41/71 (57%), Positives = 50/71 (70%)
 Frame = -3

Query: 544 ASQQPACPQLYIYSSADIVIPAKSVESFIEEQRKAGHMVKACNFQCSPHVDHFRTFPDKY 365
           + QQP CPQ Y+YSSAD VIPA+ VE F+E QR  G  V A +F  SPHVDH+R+FP  Y
Sbjct: 307 SEQQPPCPQFYLYSSADRVIPAECVERFVESQRSLGRSVFAHDFVSSPHVDHYRSFPHVY 366

Query: 364 SELLTSFLKLC 332
           S  +  FLK+C
Sbjct: 367 SAKIDEFLKVC 377