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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917692
Clone id YMU001_000104_C06
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGGCAGAGGCATACAAGGAGCTGCGGCGCCATCTCACCATGCTCGGCGTTTGGATCGCT
GTCATCCGGGCCGTTCCTTACGCCATGCACTTCCTCTCCAAGCGCGGCCAAGAGCAGGAG
CTCACGCTTGATTTCTGATCTTGGCTCCTCCTTGTTGTTGATGCGATTCTCTTCGTTTCA
AACTGGCGGCGTTCCCTGCAAGGGTGCAAAGGTTTTGTTCTCTCTGCCGATCAAGGCTAA
TCATGGCAGTCCTTTCTGATTGGTCGGTGCAGTTTTACCTTCTGCAGCTCCATGCAATTA
ATGTAGCTAATTGTGGTGCTTCTTCCTTTTAGTTAGTTGAGTTGCAGTTGCTACACAATC
GGAGCTTGGTTCCTGTGTGTTCTGTGGTTCTAGGTGATCTCTGGTGTAGAGATGGACC
■■Homology search results ■■ -
sp_hit_id Q9XIA7
Definition sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana
Align length 45
Score (bit) 46.2
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917692|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_C06.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6 ...    46   5e-05
sp|Q8Y9G5|HIS6_LISMO Imidazole glycerol phosphate synthase subun...    30   4.9  
sp|Q722Y7|HIS6_LISMF Imidazole glycerol phosphate synthase subun...    30   4.9  
sp|Q5T3I0|GPTC4_HUMAN G patch domain-containing protein 4 OS=Hom...    30   4.9  

>sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6
           homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1
          Length = 54

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF 135
           KAEA K+LR H+ + G W+ +IRA PY + + S    + EL +DF
Sbjct: 12  KAEALKQLRTHVALFGSWVVIIRAAPYVLSYFS--DSKDELKIDF 54


>sp|Q8Y9G5|HIS6_LISMO Imidazole glycerol phosphate synthase subunit
           hisF OS=Listeria monocytogenes GN=hisF PE=3 SV=1
          Length = 251

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 193 NAASLKRRESHQQQGGAKIRNQA*APALGRAWRGSAW 83
           N+A++KR E  Q+ G AK  NQ    A+   W G+ W
Sbjct: 103 NSAAIKRPELIQE-GAAKFGNQCIVVAIDAKWNGTNW 138


>sp|Q722Y7|HIS6_LISMF Imidazole glycerol phosphate synthase subunit
           hisF OS=Listeria monocytogenes serotype 4b (strain
           F2365) GN=hisF PE=3 SV=1
          Length = 251

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 193 NAASLKRRESHQQQGGAKIRNQA*APALGRAWRGSAW 83
           N+A++KR E  Q+ G AK  NQ    A+   W G+ W
Sbjct: 103 NSAAIKRPELIQE-GAAKFGNQCIVVAIDAKWNGTNW 138


>sp|Q5T3I0|GPTC4_HUMAN G patch domain-containing protein 4 OS=Homo
           sapiens GN=GPATCH4 PE=1 SV=2
          Length = 446

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = -1

Query: 274 NCTDQSERTAMISLDRQREQNLCTLAGNAASLKRRESHQQQ-----------GGAKIRNQ 128
           N  D+ E T +    R+ E   C+   +  S K+R+ HQ++           GGA+    
Sbjct: 348 NLEDRGEETVLGGGTREAESRACSDGRSRKSKKKRQQHQEEEDILDVRDEKDGGAR---- 403

Query: 127 A*APALGRAWRGSAWRKERPG*QRSKR 47
               A  RA  GS+ R +R   Q  K+
Sbjct: 404 ---EAESRAHTGSSSRGKRKRQQHPKK 427
tr_hit_id A9NJT1
Definition tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 44
Score (bit) 57.4
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917692|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_C06.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea...    57   3e-07
tr|A9RR28|A9RR28_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|A9PBF2|A9PBF2_POPTR Putative uncharacterized protein OS=Popul...    50   4e-05
tr|A9PCI5|A9PCI5_POPTR Putative uncharacterized protein OS=Popul...    50   6e-05
tr|A7P968|A7P968_VITVI Chromosome chr3 scaffold_8, whole genome ...    50   6e-05
tr|B4FCR0|B4FCR0_MAIZE Putative uncharacterized protein OS=Zea m...    50   7e-05
tr|Q0DQ74|Q0DQ74_ORYSJ Os03g0626200 protein OS=Oryza sativa subs...    47   5e-04
tr|B8AMN6|B8AMN6_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|A9S5T8|A9S5T8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|Q9FHN1|Q9FHN1_ARATH Gb|AAD55616.1 OS=Arabidopsis thaliana GN=...    36   1.1  
tr|Q98KK3|Q98KK3_RHILO Mll1436 protein OS=Rhizobium loti GN=mll1...    33   5.4  
tr|Q0JM91|Q0JM91_ORYSJ Os01g0525000 protein (Fragment) OS=Oryza ...    33   5.4  
tr|Q9SSP9|Q9SSP9_ARATH F6D8.33 OS=Arabidopsis thaliana GN=At1g52...    33   9.2  

>tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 55

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLD 132
           KA AYK+LR+HLT+LG+W+A IR  PY  HFL+K  ++ EL L+
Sbjct: 12  KAAAYKQLRKHLTLLGIWVAAIRVAPYVAHFLAK-DKDHELKLE 54


>tr|A9RR28|A9RR28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160542 PE=4 SV=1
          Length = 170

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF 135
           KAEA+K L++HLT LG+WI  IRA PY    +SK  Q++ L LDF
Sbjct: 127 KAEAHKTLKKHLTYLGLWICAIRATPYIFALISK--QDESLELDF 169


>tr|A9PBF2|A9PBF2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 54

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF 135
           KAEA K+LR H+ M G W+ V+R  PY +H++S   ++ EL L+F
Sbjct: 12  KAEALKQLRSHVAMFGAWVVVLRVTPYVLHYISH--EKDELKLEF 54


>tr|A9PCI5|A9PCI5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 54

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF 135
           KAEA K+L+ H+ M G W+ V+R  PY +H+LS   ++ EL L+F
Sbjct: 12  KAEALKQLKSHVAMFGAWVVVLRVTPYVLHYLS--DEKDELKLEF 54


>tr|A7P968|A7P968_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036448001
           PE=4 SV=1
          Length = 54

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF 135
           KA A K+LR H+ M G W+AV+R  PY +H+ S   +++EL +DF
Sbjct: 12  KAVALKQLRTHVVMFGAWVAVVRVTPYILHYFS--DEKEELKIDF 54


>tr|B4FCR0|B4FCR0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 56

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLD 132
           K  AYK+LR H+ ++    AVIRA PY +HFL++ G  QEL LD
Sbjct: 12  KEAAYKQLRSHIIIMASCAAVIRATPYILHFLARDGDIQELKLD 55


>tr|Q0DQ74|Q0DQ74_ORYSJ Os03g0626200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0626200 PE=4 SV=1
          Length = 56

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/44 (47%), Positives = 29/44 (65%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLD 132
           K  AYK+LR HL ++   +A IRA PY +HFL++     ELTL+
Sbjct: 12  KEVAYKQLRSHLIVMASCVAAIRAAPYILHFLNRDADRLELTLE 55


>tr|B8AMN6|B8AMN6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12689 PE=4 SV=1
          Length = 56

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/44 (47%), Positives = 29/44 (65%)
 Frame = +1

Query: 1   KAEAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLD 132
           K  AYK+LR HL ++   +A IRA PY +HFL++     ELTL+
Sbjct: 12  KEVAYKQLRSHLIVMASCVAAIRAAPYILHFLNRDADRLELTLE 55


>tr|A9S5T8|A9S5T8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74963 PE=4 SV=1
          Length = 234

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 7   EAYKELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQE 114
           EA ++LR+HL +L +W+A IR+ PY +      G+E
Sbjct: 112 EALQQLRKHLAVLALWVAAIRSAPYFLSMWESHGRE 147


>tr|Q9FHN1|Q9FHN1_ARATH Gb|AAD55616.1 OS=Arabidopsis thaliana
           GN=At5g51530 PE=4 SV=1
          Length = 1149

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = +1

Query: 16  KELRRHLTMLGVWIAVIRAVPYAMHFLSKRGQEQELTLDF*SWLLLVVDAILFVSNWRRS 195
           + +R H    G+W+AV++AV +   FL K+  ++ L LD+ + L +V +  +     R++
Sbjct: 506 RPIREH--NFGIWVAVLKAVQFTFSFLGKKYAKKYLVLDYDAALTVVENLCMSEDERRKN 563

Query: 196 L 198
           L
Sbjct: 564 L 564