BP917709
Clone id YMU001_000104_D12
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GAGTACCTGCGCAAAGTCATGGTAGGAAATGTCTCACTTAGGCTTGGCCACTGCACCTTC
TCCAATTTTCACTTCTTGTTGTATGTGCACTGTTGATGTTTTCCACAATGTCCATCATCT
TCACAGGTGCTTTGACAATAAATTCTCTGTTTGCCAGTTGTAACTGCTCATATGAGTATG
CTTTGGCTTAAAACAGTTTAGAGTTTATTCATTCTTGTTTTTCTTGACCATGCTGGGTCA
TTCTACATTTGATACACAATTGTGGTTGGTTGTTCACTTTATTATGATAGGTTTTTTGAC
TTGTATGGGTTATATGATAGCTCCAGCTTCTACCCGCTCATGATAGGGACATAGATTTGC
TATTGCTATACTAATAAAGGTTCTGATGACTCCAATAAATCTGCGGTTGGTTCAGCCTCA
GCCTGCATATAACAGGGATATAGACATTATCTCGGAACTGCTGTACCAATAAAGGATATA
GTCATCATTGTCGGA
■■Homology search results ■■ -
sp_hit_id Q8CBR6
Definition sp|Q8CBR6|TSK_MOUSE Tsukushin OS=Mus musculus
Align length 28
Score (bit) 29.6
E-value 7.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917709|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_D12.
(495 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8CBR6|TSK_MOUSE Tsukushin OS=Mus musculus GN=Tsku PE=2 SV=2 30 7.9
sp|Q66K99|GTDC1_XENTR Glycosyltransferase-like domain-containing... 30 8.0
sp|Q4V7R4|GTDC1_XENLA Glycosyltransferase-like domain-containing... 30 8.0

>sp|Q8CBR6|TSK_MOUSE Tsukushin OS=Mus musculus GN=Tsku PE=2 SV=2
Length = 354

Score = 29.6 bits (65), Expect = 7.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2

Query: 26 EMSHLGLATAPSPIFTSCCMCTVDVFHN 109
++SH GLA P+ IFTS + +++ HN
Sbjct: 115 DLSHNGLAALPAEIFTSSPLSDINLSHN 142


>sp|Q66K99|GTDC1_XENTR Glycosyltransferase-like domain-containing
protein 1 OS=Xenopus tropicalis GN=gtdc1 PE=2 SV=1
Length = 437

Score = 29.6 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1

Query: 1 EYLRKVMVGNVSLRLGHCTFSNFHFLLYVHC*CFPQCPSS 120
+YL+ + + +V + F L VHC C+P CP S
Sbjct: 332 DYLQALCMADVVVSTAKHEFFGVAMLEAVHCGCYPLCPKS 371


>sp|Q4V7R4|GTDC1_XENLA Glycosyltransferase-like domain-containing
protein 1 OS=Xenopus laevis GN=gtdc1 PE=2 SV=1
Length = 437

Score = 29.6 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1

Query: 1 EYLRKVMVGNVSLRLGHCTFSNFHFLLYVHC*CFPQCPSS 120
+YL+ + + +V + F L VHC C+P CP S
Sbjct: 332 DYLQALCMADVVVSTAKHEFFGVAMLEAVHCGCYPLCPKS 371


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917709|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_D12.
(495 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******