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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917724
Clone id YMU001_000104_F05
Library
Length 279
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTGAAGGGAACACACGCCTTCTGACCATCCATGGCAGATATGTCAAATAAACTGAACGA
TGGCTGGGAGTCCATAGCATTGGAATATTGCATCAAATGGCCTCTGCAGCTACTTTTCAC
TAAAGAAACTTTGTCAAAGTAAGGGCTTGCACCTTTATTGAATCGTGTCAAGCATCTCTT
GCAGTGATGTTGAAGCTTTTTGATTTCAGAAATCTCCATTAGGTGGCAATCCATAGATGC
AGGAAGAGTTGGAAGTGTTGAGGTTTTCTTTATGGCACA
■■Homology search results ■■ -
sp_hit_id Q9M350
Definition sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
Align length 27
Score (bit) 47.0
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917724|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_F05.
         (264 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog O...    47   3e-05
sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog O...    47   4e-05
sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus mu...    35   0.15 
sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo s...    34   0.20 
sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis G...    32   1.3  
sp|Q9H489|TSYL3_HUMAN Testis-specific Y-encoded-like protein 3 O...    30   2.9  

>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog
           OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2
          Length = 745

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW++IALEY + WP+QL FT+E LSK
Sbjct: 504 DGWDAIALEYSVDWPMQLFFTQEVLSK 530


>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog
           OS=Medicago truncatula GN=85P PE=2 SV=1
          Length = 739

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/38 (52%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
 Frame = +2

Query: 29  SMADMSNKLN-DGWESIALEYCIKWPLQLLFTKETLSK 139
           S+++ S++++ DGW+ IALEY I+WPL L FT+E LS+
Sbjct: 482 SISNASSEMSVDGWDGIALEYSIEWPLHLFFTQEVLSR 519


>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus
           musculus GN=Tubgcp4 PE=2 SV=2
          Length = 667

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 56  NDGWESIALEYCIKWPLQLLFTKETLSK 139
           + GW ++ L Y ++WPL +LFT   L K
Sbjct: 447 SSGWAALGLSYKVQWPLHILFTPAVLEK 474


>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo
           sapiens GN=TUBGCP4 PE=1 SV=1
          Length = 667

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 62  GWESIALEYCIKWPLQLLFTKETLSK 139
           GW ++ L Y ++WPL +LFT   L K
Sbjct: 449 GWAALGLSYKVQWPLHILFTPAVLEK 474


>sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis
           GN=topX PE=3 SV=2
          Length = 870

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 141 YFDKVSLVKSSCRGHLMQYSNAMDSQPSFSLFDI 40
           Y++    + S CRGHL++  N  +  P + LF +
Sbjct: 21  YYENDHYIVSWCRGHLLELKNPEEMDPKYKLFQL 54


>sp|Q9H489|TSYL3_HUMAN Testis-specific Y-encoded-like protein 3
           OS=Homo sapiens GN=TSPYL3 PE=2 SV=1
          Length = 355

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 234 MDCHLMEISEIKKLQHHCKRCLTRFNKGASPYFDKVSLVKS-SCR 103
           M C+LM + E+++L+H    C  +F   ++PYF    +VK   CR
Sbjct: 217 MLCYLMNL-EVRELRHSRTGCKFKFRFWSNPYFQNKVIVKEYECR 260
tr_hit_id A9RXH9
Definition tr|A9RXH9|A9RXH9_PHYPA Gamma tubulin ring complex protein 4 OS=Physcomitrella patens subsp. patens
Align length 27
Score (bit) 49.3
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917724|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_F05.
         (264 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RXH9|A9RXH9_PHYPA Gamma tubulin ring complex protein 4 OS=P...    49   1e-04
tr|A9NW25|A9NW25_PICSI Putative uncharacterized protein OS=Picea...    48   2e-04
tr|Q60F24|Q60F24_ORYSJ Os05g0154500 protein OS=Oryza sativa subs...    46   0.001
tr|B8AY65|B8AY65_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A7Q0E6|A7Q0E6_VITVI Chromosome chr7 scaffold_42, whole genome...    46   0.001
tr|A5BKC3|A5BKC3_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A3B039|A3B039_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A7GME9|A7GME9_BACCN DNA topoisomerase I OS=Bacillus cereus su...    35   1.4  
tr|B6L8S9|B6L8S9_BRAFL Putative uncharacterized protein OS=Branc...    35   1.4  
tr|B3RSJ9|B3RSJ9_TRIAD Putative uncharacterized protein OS=Trich...    35   1.9  
tr|A2YWR4|A2YWR4_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q8BYN2|Q8BYN2_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|Q8BWR3|Q8BWR3_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|Q8BKL6|Q8BKL6_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|Q543T6|Q543T6_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|Q3U6E9|Q3U6E9_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.4  
tr|Q3TSV8|Q3TSV8_MOUSE Putative uncharacterized protein (Fragmen...    35   2.4  
tr|Q642S3|Q642S3_XENLA MGC81229 protein OS=Xenopus laevis GN=tub...    34   3.2  
tr|Q05AR5|Q05AR5_XENTR Tubulin, gamma complex associated protein...    34   3.2  
tr|Q5NVE4|Q5NVE4_PONAB Putative uncharacterized protein DKFZp459...    34   3.2  
tr|B7NZE4|B7NZE4_RABIT Tubulin, gamma complex associated protein...    34   3.2  
tr|B2KIP3|B2KIP3_RHIFE Gamma-tubulin complex component 4 (Predic...    34   3.2  
tr|B0KWF7|B0KWF7_CALJA Tubulin, gamma complex associated protein...    34   3.2  
tr|A9X1B2|A9X1B2_PAPAN Tubulin, gamma complex associated protein...    34   3.2  
tr|A0JNH5|A0JNH5_BOVIN Tubulin, gamma complex associated protein...    34   3.2  
tr|B6MLL6|B6MLL6_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|Q9BVR6|Q9BVR6_HUMAN TUBGCP4 protein OS=Homo sapiens GN=TUBGCP...    34   3.2  
tr|B3KNK6|B3KNK6_HUMAN cDNA FLJ14797 fis, clone NT2RP4001256, hi...    34   3.2  
tr|Q4T698|Q4T698_TETNG Chromosome undetermined SCAF8850, whole g...    34   4.2  
tr|B3DIU9|B3DIU9_DANRE Similar to Gamma tubulin ring complex pro...    34   4.2  

>tr|A9RXH9|A9RXH9_PHYPA Gamma tubulin ring complex protein 4
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_206582 PE=4 SV=1
          Length = 735

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW+ +ALEY I WPLQLLFTK+ LSK
Sbjct: 502 DGWDGLALEYSINWPLQLLFTKDVLSK 528


>tr|A9NW25|A9NW25_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 754

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW+ IALEY + WPLQLLFT+E L+K
Sbjct: 511 DGWDGIALEYSVDWPLQLLFTREVLAK 537


>tr|Q60F24|Q60F24_ORYSJ Os05g0154500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0059G01.11 PE=4 SV=1
          Length = 754

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW+SIALEY + WPLQL FT + +SK
Sbjct: 508 DGWDSIALEYSVDWPLQLFFTPDVVSK 534


>tr|B8AY65|B8AY65_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18509 PE=4 SV=1
          Length = 762

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW+SIALEY + WPLQL FT + +SK
Sbjct: 508 DGWDSIALEYSVDWPLQLFFTPDVVSK 534


>tr|A7Q0E6|A7Q0E6_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028020001
           PE=4 SV=1
          Length = 743

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           +GW+ IALEY + WPLQL FT+E LSK
Sbjct: 501 EGWDGIALEYSVDWPLQLFFTQEVLSK 527


>tr|A5BKC3|A5BKC3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003625 PE=4 SV=1
          Length = 1529

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 59   DGWESIALEYCIKWPLQLLFTKETLSK 139
            +GW+ IALEY + WPLQL FT+E LSK
Sbjct: 1287 EGWDGIALEYSVDWPLQLFFTQEVLSK 1313


>tr|A3B039|A3B039_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016411 PE=4 SV=1
          Length = 700

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 59  DGWESIALEYCIKWPLQLLFTKETLSK 139
           DGW+SIALEY + WPLQL FT + +SK
Sbjct: 446 DGWDSIALEYSVDWPLQLFFTPDVVSK 472


>tr|A7GME9|A7GME9_BACCN DNA topoisomerase I OS=Bacillus cereus
           subsp. cytotoxis (strain NVH 391-98) GN=Bcer98_0977 PE=4
           SV=1
          Length = 96

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 210 SEIKKLQ--HHCKRCLTRFNKGASPYFDKVSLVKSSCRGHLMQYSNAMDSQPSFSLFDI 40
           +EI KL   HH ++ ++     + PY++    + S CRGHL++  N  +  P + +F +
Sbjct: 22  NEIMKLPRFHHSQKYIS-----SKPYYENNHYIVSWCRGHLLELKNPEEMDPMYKVFKL 75


>tr|B6L8S9|B6L8S9_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_67534 PE=4 SV=1
          Length = 1105

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 62   GWESIALEYCIKWPLQLLFTKETLSK*GLAPLLNRVKHLLQ*C 190
            GW  + L Y ++WPL +LFT+  L K  L+  + RV+  LQ C
Sbjct: 961  GWGVLGLSYSVQWPLHILFTEAVLDKFLLS--VKRVQLELQHC 1001


>tr|B3RSJ9|B3RSJ9_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_23331 PE=4 SV=1
          Length = 646

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 62  GWESIALEYCIKWPLQLLFTKETLSK 139
           GW  + L+Y ++WPLQL+ TK  L K
Sbjct: 432 GWTCLNLQYNVQWPLQLILTKPILEK 457