BP917735 [AcEST]

BP917735
Clone id	YMU001_000104_G07
Library	YMU01
Length	461
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000104_G07.
Accession	BP917735
Tissue type	prothallium
Developmental stage	-
Contig ID	-
Sequence	GATCAATAGTCAAAACCACATTATATTATTGGTTCAAAGTTACATACAAATTATTAACTT GAAGCATACTCATCATCTATGAAGAGATGCCTTCTTCGAGGCCTATCTTTTGGACGACCA TAGTAACGTGGGTCCAATGTCATGCATCTCGCCTCCACCTCGATGTATTCAAGTAATGCA CTCATGTCGCTCGTTGGATGACTCTACATATCCATAAGGTGCATGATGCAAAACTACCAT ATGTCGATAAATAATCAACTGAGATGCTCTGCAAAATCTCTCAACCCAAAATATTGTGTC TCCTTTGTGGAGCAAACAATCGGCATCGAATAACCTTGCAGTGAGTTCTTAAGGCTGAAC AACTGATAGCCAATAATCAAGCAGTTGCTAGTTCCTCATTTACTGCAACTTCATGGAGAA AAAACCCGATAGCATGGTACCATTCATGGGGTGAATAACTA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	B2LMI2
Definition	sp\|B2LMI2\|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta'' OS=Guizotia abyssinica
Align length	44
Score (bit)	29.6
E-value	6.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP917735\|Adiantum capillus-veneris mRNA, clone: YMU001_000104_G07. (461 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|B2LMI2\|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta''... 30 6.5 sp\|A6NNF0\|YK018_HUMAN Putative TRIM49-like protein ENSP000003530... 29 8.5 >sp\|B2LMI2\|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta'' OS=Guizotia abyssinica GN=rpoC2 PE=3 SV=1 Length = 1381 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 17 HIILLVQSYIQIINLKHTHHLRDAFFEAYLLDDHSNV-GPMSC 145 H +LV +Y+Q+ NLKH + + YLLD++ + P SC Sbjct: 999 HNKILVTNYLQLDNLKHIFQI-----LKYYLLDENGKIYNPYSC 1037 >sp\|A6NNF0\|YK018_HUMAN Putative TRIM49-like protein ENSP00000353052 OS=Homo sapiens PE=5 SV=3 Length = 361 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/84 (21%), Positives = 41/84 (48%) Frame = +3 Query: 78 YEEMPSSRPIFWTTIVTWVQCHASRLHLDVFKCTHVARWMTLHIHKVHDAKLPYVDK*S 257 ++++P F TW + + +HL K +AR +L + + ++ + + Sbjct: 43 WQDIPILTQCFECMKTTWQRNLKTNIHL---KQMASLARKASLWLFLSSEEQMCGTHRET 99 Query: 258 TEMLCKISQPKILCLLCGANNRHR 329 ++ C++ + +LCLLC ++ HR Sbjct: 100 KKIFCEVDR-SLLCLLCSSSQEHR 122
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q0FKF8
Definition	tr\|Q0FKF8\|Q0FKF8_9RHOB Putative uncharacterized protein OS=Roseovarius sp. HTCC2601
Align length	31
Score (bit)	34.3
E-value	3.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP917735\|Adiantum capillus-veneris mRNA, clone: YMU001_000104_G07. (461 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q0FKF8\|Q0FKF8_9RHOB Putative uncharacterized protein OS=Roseo... 34 3.2 >tr\|Q0FKF8\|Q0FKF8_9RHOB Putative uncharacterized protein OS=Roseovarius sp. HTCC2601 GN=R2601_18618 PE=4 SV=1 Length = 845 Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -1 Query: 182 SALLEYIEVEARCMTLDPRYYGRPKDRPRRR 90 +AL E + + R +TLDPRY G P+ PR R Sbjct: 429 AALAESVGLSPRRLTLDPRYMGAPEQEPRDR 459