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NBDC - LSDB Archive
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BP917736
Clone id YMU001_000104_G08
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTTCATCTGAACAAATTGTACATACATACATCACGTATATGAACCTGCATCAGGCCCTG
ACCCGTCCCAGCTTGTCCCACATGGTCATATATGCAGAGAGAGTGTGACCTTAAACTGGG
AGTTGCTCCTCTGTAGCTGATCCATACAGAGAATTGTTATAAACAGGAATGTCACCAAGA
GCGCCATCATTCATTGCCTGCAAAGCTCTATCTCCACTGCGAGCTCTTGAAGCTCCCGCA
TCACTAGCCCTTGTCCTGCGTCGACTACTCTGAAGTGGAGTATCGTCATCTTCACCAACG
TGCTTCTCACCCAAATCTGACAAGTGTTCTTCATCATCAGTTGTCTCATCACCCTCAAAT
AATCTCTTTCCTTGAATA
■■Homology search results ■■ -
sp_hit_id Q7ZY40
Definition sp|Q7ZY40|AN32E_XENLA Acidic leucine-rich nuclear phosphoprotein 32 family member E OS=Xenopus laevis
Align length 29
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917736|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_G08.
         (378 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZY40|AN32E_XENLA Acidic leucine-rich nuclear phosphoprotein...    31   2.2  
sp|Q6P087|RUSD3_HUMAN RNA pseudouridylate synthase domain-contai...    30   3.7  
sp|Q2TBK7|RUSD3_BOVIN RNA pseudouridylate synthase domain-contai...    30   3.7  
sp|Q9STV0|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsi...    30   3.7  
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l...    29   6.3  
sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcriptio...    29   8.3  

>sp|Q7ZY40|AN32E_XENLA Acidic leucine-rich nuclear phosphoprotein 32
           family member E OS=Xenopus laevis GN=anp32e PE=1 SV=1
          Length = 263

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 371 GKRLFEGDETTDDEEHLSDLGEKHVGEDD 285
           G R +E +E  +DEE  SDLGE+   E++
Sbjct: 174 GPRRYEAEEDEEDEESASDLGEEEEEEEE 202


>sp|Q6P087|RUSD3_HUMAN RNA pseudouridylate synthase
           domain-containing protein 3 OS=Homo sapiens GN=RPUSD3
           PE=2 SV=2
          Length = 343

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 295 VKMTILHFRVVDAGQGLVMRELQELAV 215
           VK T+ HFRVV  G G  + +LQ L V
Sbjct: 208 VKKTLSHFRVVATGSGCALVQLQPLTV 234


>sp|Q2TBK7|RUSD3_BOVIN RNA pseudouridylate synthase
           domain-containing protein 3 OS=Bos taurus GN=RPUSD3 PE=2
           SV=1
          Length = 344

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 295 VKMTILHFRVVDAGQGLVMRELQELAV 215
           VK T+ HFRVV  G G  + +LQ L V
Sbjct: 209 VKRTLSHFRVVATGSGCALVQLQPLTV 235


>sp|Q9STV0|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis
           thaliana GN=GWD2 PE=2 SV=2
          Length = 1278

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 376 FKERDYLRVMRQLMMKNTCQIWVRSTLVKMTILHFRVVDAGQG 248
           F  R+Y   + Q  +K  C++W+ + +   T+LH+ V  +  G
Sbjct: 251 FHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVAKSSAG 293


>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium
           lophurae PE=4 SV=1
          Length = 351

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +2

Query: 173 HQERHHSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASHPNLTSVLHHQLSHH 352
           H+E HH  P +   H E    PHH         E  + H H    H +     HH L HH
Sbjct: 74  HEEHHHHHPEE---HHE----PHH--------EEHHHHHPHPHHHHHHHPPHHHHHLGHH 118


>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription
            subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=2
          Length = 1587

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = +2

Query: 161  KQECHQERHHSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASHPNLTSVLHHQ 340
            +QE   ++HH  P    LH E    PHH                HQ+ S P    +  H 
Sbjct: 1408 QQEQQHQQHHQNPQ---LHHEAQHHPHH---------------PHQQPSMPPPQLIPQHH 1449

Query: 341  LSHHPQ 358
            L HH Q
Sbjct: 1450 LQHHQQ 1455
tr_hit_id B3MRE2
Definition tr|B3MRE2|B3MRE2_DROAN GF21012 OS=Drosophila ananassae
Align length 81
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917736|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_G08.
         (378 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3MRE2|B3MRE2_DROAN GF21012 OS=Drosophila ananassae GN=GF2101...    35   1.8  
tr|B3L500|B3L500_PLAKH Putative uncharacterized protein OS=Plasm...    35   2.4  
tr|Q1G3Z9|Q1G3Z9_ARATH Putative uncharacterized protein OS=Arabi...    33   7.0  
tr|B4J0T6|B4J0T6_DROGR GH15882 OS=Drosophila grimshawi GN=GH1588...    33   7.0  
tr|A7TPB7|A7TPB7_VANPO Putative uncharacterized protein OS=Vande...    33   7.0  
tr|B4NJB3|B4NJB3_DROWI GK12864 OS=Drosophila willistoni GN=GK128...    33   9.2  

>tr|B3MRE2|B3MRE2_DROAN GF21012 OS=Drosophila ananassae GN=GF21012
           PE=4 SV=1
          Length = 757

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 116 LGVAPL*LIHTENCYKQECHQERHHSLPAKL-YLHCELLKLPHH*PLSCVDYSEVEYRHL 292
           +G  P+ + H  N +    H   HH+ P  + +L  +    PHH P+    + +  + + 
Sbjct: 307 MGGGPMQMPHHHNNHHHNHHNNNHHNGPPHMQHLQQQNHPHPHHHPM----HHQQHHHNN 362

Query: 293 HQRASHPNLTSVLHHQLSHHP 355
           H    H N  +  HH +  HP
Sbjct: 363 HHNNHHNNHHNNNHHNMGPHP 383


>tr|B3L500|B3L500_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_091710 PE=4
           SV=1
          Length = 721

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 140 IHTENCYKQECHQERHHSL-PAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASH-P 313
           +H +N ++Q  HQ+ HH     +  LH + L   +H          +  ++ HQ+  H  
Sbjct: 314 LHQQNLHQQNLHQQNHHQQNHHQQNLHQQNLHQQNH------HQQNLHQQNHHQQNLHQQ 367

Query: 314 NLTSVLHHQLSHHPQ 358
           NL    HHQ +HH Q
Sbjct: 368 NLHQQNHHQQNHHQQ 382



 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 140 IHTENCYKQECHQERHHSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASH-PN 316
           +H +N ++Q  HQ+ HH        H +      +     +   +   ++LHQ+  H  N
Sbjct: 264 LHQQNHHQQNHHQQNHHQQNHHQQNHHQKNHHQQNLHQQNLHQQKHHQQNLHQQNLHQQN 323

Query: 317 LTSVLHHQLSHHPQ 358
           L    HHQ +HH Q
Sbjct: 324 LHQQNHHQQNHHQQ 337


>tr|Q1G3Z9|Q1G3Z9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 196

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +2

Query: 146 TENCYKQECHQERHHSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASHPNLTS 325
           T++ Y Q+     HHSL   LY   E     HH  L    Y +VEY H      H +L  
Sbjct: 66  TQSLY-QQVEYHHHHSLDQSLYQQVEY---HHHHSLDQSLYQQVEYHH------HHSLDQ 115

Query: 326 VLHHQLSHH 352
            L+ Q+ +H
Sbjct: 116 SLYQQVVNH 124


>tr|B4J0T6|B4J0T6_DROGR GH15882 OS=Drosophila grimshawi GN=GH15882
           PE=4 SV=1
          Length = 1210

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
 Frame = +2

Query: 173 HQERHHSLPAKLYLHCELLKLPH--H*PLSCVDYSEV------------EYRHLHQRASH 310
           H E H+S P  L+ H E    PH  H  +  V  + +            E+ H HQ   +
Sbjct: 739 HPEHHYSAPPPLHHHYESSDPPHIEHFSVEMVPSTPIFEYHSGPSLHPPEHHHHHQSEFY 798

Query: 311 PNLTSVLHHQLSHHPQ 358
           P      +H   HHP+
Sbjct: 799 PEHLHNDYHHTEHHPE 814


>tr|A7TPB7|A7TPB7_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1019p24 PE=4 SV=1
          Length = 228

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +2

Query: 143 HTENCYKQECHQERHHSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASHPNLT 322
           H  + +    HQ  HH      ++H     LPHH  L     +   + H+HQ   H   T
Sbjct: 67  HPIHQHHHHTHQHPHHIRQLLHHIH-----LPHHHTLQPPQVTVQLHHHIHQHLHH---T 118

Query: 323 SVLHHQLSHHPQII 364
             LHH +    Q+I
Sbjct: 119 HQLHHHIHQLLQVI 132


>tr|B4NJB3|B4NJB3_DROWI GK12864 OS=Drosophila willistoni GN=GK12864
           PE=4 SV=1
          Length = 769

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 188 HSLPAKLYLHCELLKLPHH*PLSCVDYSEVEYRHLHQRASHPNLTSVLHHQLSHHP 355
           H  P  L +H     LP     S +D+ + ++   H RAS+ +L +   H   HHP
Sbjct: 662 HLDPTTLTVHNSQQLLPSSGNQSFLDHQQQQHHQAHLRASNASLQAQAAHHTHHHP 717