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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917743
Clone id YMU001_000104_H04
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGCCCAGCGTCCTCCATTTGTCTCCTCTCTCTCTTGGTGCCATTGACTCTCTCTCTTT
CCCTTCCGCTGCACAGTCTGACATGGTATCAGAGCACAAGGGTGCTAGTTTTGCCATCGC
CATCAGCAAGGAGGCCATTGCGAGGAGTTCTATCGCAAAGAACCCCTCAGCTTCCACCAA
CATTTTCTGCCCTAGCATTTTCGCATGAGGGCTGCGTTTTTTGTGTGGACTGCTAGCGTC
TTCTGCTCTCCTCTCCATCGCCATCCTCCTCCATCACCTAGCGCCTTCTCCTTTACCCTC
TATTTTGCTTGCGGTTTTCAGCAACCTAGCGTTTCTGCTGGCATTGTATTTTGCAGTAGA
GGGGTCCATCTTCTTTGCCTTGCGTTTTTTAAGCACCTGCAAGTTTCCATTTGATGCTTG
CTGCCCAGCGTTTTGCAGAAGGGAGGCACACACACCTTGCGATTTGCAGCTCGGTACCAG
CTCAGCGATCGGAACCTTCTTTTCCCTACCAGATCTACACCATC
■■Homology search results ■■ -
sp_hit_id Q14141
Definition sp|Q14141|SEPT6_HUMAN Septin-6 OS=Homo sapiens
Align length 48
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917743|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H04.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14141|SEPT6_HUMAN Septin-6 OS=Homo sapiens GN=SEPT6 PE=1 SV=4      32   2.4  
sp|Q9R1T4|SEPT6_MOUSE Septin-6 OS=Mus musculus GN=Sept6 PE=1 SV=4      31   4.1  
sp|Q8MRQ4|LMBD2_DROME LMBR1 domain-containing protein 2 homolog ...    30   7.0  
sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila ...    30   9.1  

>sp|Q14141|SEPT6_HUMAN Septin-6 OS=Homo sapiens GN=SEPT6 PE=1 SV=4
          Length = 434

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -3

Query: 504 EKKVPIAELVPSCKSQGVCASLLQNAGQQASNGNLQVLKKRKAKKMDP 361
           +KK  + + V + K +   A LLQ+ G QA  G  Q LK+ K KK +P
Sbjct: 384 DKKKSLDDEVNAFKQRKTAAELLQSQGSQA--GGSQTLKRDKEKKNNP 429


>sp|Q9R1T4|SEPT6_MOUSE Septin-6 OS=Mus musculus GN=Sept6 PE=1 SV=4
          Length = 434

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -3

Query: 504 EKKVPIAELVPSCKSQGVCASLLQNAGQQASNGNLQVLKKRKAKKMDP 361
           +KK  + E + + K +   A LLQ+ G QA  G  Q LK+ K KK +P
Sbjct: 384 DKKKCLDEEMNAFKQRKAAAELLQSQGSQA--GGSQTLKRDKEKKNNP 429


>sp|Q8MRQ4|LMBD2_DROME LMBR1 domain-containing protein 2 homolog
           OS=Drosophila melanogaster GN=CG8135 PE=2 SV=2
          Length = 694

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 178 GGS*GVLCDRTPRNGLLADGDG 113
           GG  G+   RTP +GLL DGDG
Sbjct: 611 GGPGGLTSSRTPADGLLRDGDG 632


>sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila
            melanogaster GN=yl PE=1 SV=2
          Length = 1984

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 112  CHRHQQGGHCEEFYRKEPLSFHQH 183
            CH H    HCE+F + +    HQH
Sbjct: 1100 CHDHSDEQHCEKFDKSKKCHVHQH 1123
tr_hit_id O62524
Definition tr|O62524|O62524_9DIPT CPY OS=Chironomus thummi
Align length 38
Score (bit) 35.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917743|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H04.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O62524|O62524_9DIPT CPY OS=Chironomus thummi GN=CpY PE=4 SV=1       35   2.3  
tr|B4M2D9|B4M2D9_DROVI GJ19472 OS=Drosophila virilis GN=GJ19472 ...    34   5.1  

>tr|O62524|O62524_9DIPT CPY OS=Chironomus thummi GN=CpY PE=4 SV=1
          Length = 3512

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 110  FAIAISKEAIARSSIAKNPSASTNIFCPSIFA*GLRFL 223
            FAIA +K AIA+ ++  NP  S NI   S+   GLRFL
Sbjct: 1817 FAIAAAKTAIAKENLTGNPGDSENISTDSLDDCGLRFL 1854


>tr|B4M2D9|B4M2D9_DROVI GJ19472 OS=Drosophila virilis GN=GJ19472
           PE=4 SV=1
          Length = 537

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 419 CCPAFCRREAHTPCDLQLGTSSA-IGTFFSLPDLH 520
           CC   CR+  HTPC L  G+ +  +GT+ S  ++H
Sbjct: 81  CCKPGCRKAFHTPCGLNNGSQNQYVGTYKSFCNIH 115