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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917745
Clone id YMU001_000104_H06
Library
Length 206
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGATTTAACTCCTTTCCTTTGATGTCTTTTGCGACTTCCGTACTTCTGCGACGTAAGCTG
TGCATTTCCTCCTCACTCAGACGTAGAGGAACTCTGGACCCCGACGCATTCTCTACCTCC
CTACAGCTACAGAAATTCCTATCACCGCTTCCATAACTCAAGTCCTTCTTTGGTACTGAT
TTGCAAACAGAAGCCATACTAATATT
■■Homology search results ■■ -
sp_hit_id Q60BY3
Definition sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
Align length 40
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917745|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H06.
         (206 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatu...    32   0.76 
sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus...    30   3.8  

>sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
           GN=aroK PE=3 SV=1
          Length = 179

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 128 SCREVENASGSRVPLRLSEEEMHSLRRRSTEVAKDIKGKE 9
           S +E+E  +G  VP+    E     RRR +EV  D+ GKE
Sbjct: 35  SDKEIERRTGVTVPMIFEYEGEAGFRRRESEVIADLTGKE 74


>sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus
           laevis GN=igf2-A PE=2 SV=1
          Length = 217

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 2   DLTPFL*CLLRLPYFCDVSCAFPPHSDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLI 181
           D+  F  C L L    +  CA P  ++ +    P  ++PP S ++ YH+ H++  S   I
Sbjct: 100 DVCCFKSCDLEL---LETYCAKPTKNERDVSTAPATAIPPLSKQDLYHKHHHTKSSKYDI 156

Query: 182 CKQK 193
            ++K
Sbjct: 157 WQRK 160
tr_hit_id Q8IJG6
Definition tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasmodium falciparum (isolate 3D7)
Align length 46
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917745|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H06.
         (206 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.2  
tr|Q7RM86|Q7RM86_PLAYO Chromodomain-helicase-DNA-binding protein...    33   9.2  
tr|Q4Z3X5|Q4Z3X5_PLABE Putative uncharacterized protein (Fragmen...    33   9.2  
tr|Q4Y279|Q4Y279_PLACH Putative uncharacterized protein (Fragmen...    33   9.2  

>tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasmodium
            falciparum (isolate 3D7) GN=PF10_0232 PE=4 SV=1
          Length = 3328

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 68   PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 193
            P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 1466 PLHNNLEELWTLLHFLNPQQYTYYETFQKKYNEIENTSLIGEAKQK 1511


>tr|Q7RM86|Q7RM86_PLAYO Chromodomain-helicase-DNA-binding protein,
            CHD-1-related OS=Plasmodium yoelii yoelii GN=PY02297 PE=4
            SV=1
          Length = 2541

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 68   PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 193
            P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 1088 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 1133


>tr|Q4Z3X5|Q4Z3X5_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB001011.00.0 PE=4 SV=1
          Length = 1536

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 68  PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 193
           P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 554 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 599


>tr|Q4Y279|Q4Y279_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000696.01.0 PE=4 SV=1
          Length = 1330

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 68  PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 193
           P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 716 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 761