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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917747
Clone id YMU001_000104_H10
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000104_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTCTGTACAGCTAATCACAAATCCCAACTATCTGTACAATGCATCCATAGCCATGTTTT
GCATGCCCACTACAAAGGCAGCAAATCTGACAGACAGGAAGGACTCAGAACATTCACTAA
AGGATGAAATCCCACCCTCAGCTAACCTTGCTACATTTTACATGAGAACTGCCGTCCTAA
AGAAAGATACATACCGATACAATCTGCAAAAGCACTCATCACTCGCACTTATTTTCTTCT
ACTTTACTTTGGTGTTGGGTTGTCGAAATTGCTTTGAGTTGAAGCTTCAATTTTTAACTG
GGGAATCGAGAAGACTTGTAATGGCCACCACTCCCCTCCGGTATACTATGCACAAATTAG
GTGAAACAACTTCAAAGGTAAGGTGTTCTGTTCAGTTGTTCAAGCTGATAGTTGGGCCCC
TCGTCGTTCTCCAGCAGCTACCAACTTCTCTACACGTGCCACAATATGCTTTCCATATGT
ATA
■■Homology search results ■■ -
sp_hit_id Q9SR82
Definition sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana
Align length 20
Score (bit) 25.0
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917747|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H10.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containi...    25   4.0  

>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide
          repeat-containing protein At3g08820 OS=Arabidopsis
          thaliana GN=PCMP-H84 PE=3 SV=1
          Length = 685

 Score = 25.0 bits (53), Expect(2) = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 5  CTANHKSQLSVQCIHSHVLH 64
          CT NH  Q+ V  I+ H+ H
Sbjct: 24 CTVNHLKQIHVSLINHHLHH 43



 Score = 24.3 bits (51), Expect(2) = 4.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 165 RTAVLKKDTYRYNLQKHSSLALIFFYFTLVLGCRN 269
           RT   ++  Y Y L  H+    IF Y +L+ G  N
Sbjct: 54  RTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88
tr_hit_id A9SMX6
Definition tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 48.1
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917747|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H10.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|Q2HS37|Q2HS37_MEDTR Nucleic acid binding NABP OS=Medicago tru...    48   3e-04
tr|Q4KSL4|Q4KSL4_PHYPA PUF-domain RNA-binding protein OS=Physcom...    47   4e-04
tr|A9SMW6|A9SMW6_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|A9RY77|A9RY77_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|Q9ZW06|Q9ZW06_ARATH Putative pumilio/Mpt5 family RNA-binding ...    46   0.001
tr|Q9ZW02|Q9ZW02_ARATH Putative pumilio/Mpt5 family RNA-binding ...    46   0.001
tr|Q8LPN4|Q8LPN4_ARATH Putative pumilio/Mpt5 family RNA-binding ...    46   0.001
tr|B6REK8|B6REK8_9BRAS Mpt5 OS=Boechera divaricarpa GN=Mpt5-1 PE...    46   0.001
tr|B2BXT4|B2BXT4_9BRAS Putative pumilio Mpt5 OS=Boechera divaric...    46   0.001
tr|A7PIR4|A7PIR4_VITVI Chromosome chr13 scaffold_17, whole genom...    46   0.001
tr|Q8S249|Q8S249_ORYSJ Putative pumilio domain-containing protei...    45   0.001
tr|Q6K9R1|Q6K9R1_ORYSJ Os02g0819300 protein OS=Oryza sativa subs...    45   0.001
tr|Q0JHT2|Q0JHT2_ORYSJ cDNA clone:J013098A15, full insert sequen...    45   0.001
tr|A7NYW5|A7NYW5_VITVI Chromosome chr6 scaffold_3, whole genome ...    45   0.001
tr|A5BN72|A5BN72_VITVI Putative uncharacterized protein OS=Vitis...    45   0.001
tr|A2XB32|A2XB32_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|A2WWX7|A2WWX7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|Q9ZW07|Q9ZW07_ARATH Putative pumilio/Mpt5 family RNA-binding ...    45   0.002
tr|B2BXT5|B2BXT5_9BRAS Putative pumilio Mpt5-2 OS=Boechera divar...    45   0.002
tr|B2BXM6|B2BXM6_ARALY Mpt5-1 OS=Arabidopsis lyrata subsp. lyrat...    45   0.002
tr|Q94HK0|Q94HK0_ORYSA Putative pumilio/Mpt5 family RNA-binding ...    44   0.003
tr|Q8LLB9|Q8LLB9_HORVU BPM OS=Hordeum vulgare GN=Bpm PE=4 SV=1         44   0.003
tr|Q5JMD6|Q5JMD6_ORYSJ Putative pumilio domain-containing protei...    44   0.003
tr|Q0DLC3|Q0DLC3_ORYSJ Os05g0109600 protein OS=Oryza sativa subs...    44   0.003
tr|B8AWY1|B8AWY1_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|B8A9X0|B8A9X0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|B7ZZV6|B7ZZV6_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.003
tr|B7F8F5|B7F8F5_ORYSJ cDNA, clone: J065036M21, full insert sequ...    44   0.003
tr|A3AZ72|A3AZ72_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003

>tr|A9SMX6|A9SMX6_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_132416 PE=4 SV=1
          Length = 1148

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 24/33 (72%), Positives = 24/33 (72%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGAQLSA*TTEQN 385
            YTYGKHIVARVEKLVAAGERR A   A     N
Sbjct: 1107 YTYGKHIVARVEKLVAAGERRSAAYMAHNNSNN 1139


>tr|Q2HS37|Q2HS37_MEDTR Nucleic acid binding NABP OS=Medicago
            truncatula GN=MtrDRAFT_AC157503g12v2 PE=4 SV=1
          Length = 1047

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGAQLSA*TT 394
            YTYGKHIVARVEKLVAAGERR A  S  TT
Sbjct: 1018 YTYGKHIVARVEKLVAAGERRIAAQSPHTT 1047


>tr|Q4KSL4|Q4KSL4_PHYPA PUF-domain RNA-binding protein
            OS=Physcomitrella patens GN=Pum-1 PE=4 SV=1
          Length = 1118

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/27 (85%), Positives = 23/27 (85%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGAQLSA 403
            YTYGKHIVARVEKLVAAGERR A   A
Sbjct: 1087 YTYGKHIVARVEKLVAAGERRSAAYMA 1113


>tr|A9SMW6|A9SMW6_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_213964 PE=4 SV=1
          Length = 1134

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/27 (85%), Positives = 23/27 (85%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGAQLSA 403
            YTYGKHIVARVEKLVAAGERR A   A
Sbjct: 1103 YTYGKHIVARVEKLVAAGERRSAAYMA 1129


>tr|A9RY77|A9RY77_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PpPum-1 PE=4 SV=1
          Length = 1119

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/27 (85%), Positives = 23/27 (85%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGAQLSA 403
            YTYGKHIVARVEKLVAAGERR A   A
Sbjct: 1088 YTYGKHIVARVEKLVAAGERRSAAYMA 1114


>tr|Q9ZW06|Q9ZW06_ARATH Putative pumilio/Mpt5 family RNA-binding
            protein OS=Arabidopsis thaliana GN=At2g29190 PE=4 SV=1
          Length = 972

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGA 415
            YTYGKHIVARVEKLVAAGERR A
Sbjct: 940  YTYGKHIVARVEKLVAAGERRMA 962


>tr|Q9ZW02|Q9ZW02_ARATH Putative pumilio/Mpt5 family RNA-binding
            protein OS=Arabidopsis thaliana GN=At2g29140 PE=2 SV=1
          Length = 964

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGA 415
            YTYGKHIVARVEKLVAAGERR A
Sbjct: 932  YTYGKHIVARVEKLVAAGERRMA 954


>tr|Q8LPN4|Q8LPN4_ARATH Putative pumilio/Mpt5 family RNA-binding
            protein OS=Arabidopsis thaliana GN=At2g29190 PE=2 SV=1
          Length = 972

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGA 415
            YTYGKHIVARVEKLVAAGERR A
Sbjct: 940  YTYGKHIVARVEKLVAAGERRMA 962


>tr|B6REK8|B6REK8_9BRAS Mpt5 OS=Boechera divaricarpa GN=Mpt5-1 PE=4
            SV=1
          Length = 970

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGA 415
            YTYGKHIVARVEKLVAAGERR A
Sbjct: 938  YTYGKHIVARVEKLVAAGERRMA 960


>tr|B2BXT4|B2BXT4_9BRAS Putative pumilio Mpt5 OS=Boechera divaricarpa
            GN=Mpt5-1 PE=4 SV=1
          Length = 975

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -1

Query: 483  YTYGKHIVARVEKLVAAGERRGA 415
            YTYGKHIVARVEKLVAAGERR A
Sbjct: 943  YTYGKHIVARVEKLVAAGERRMA 965