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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917749
Clone id YMU001_000105_A01
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGATTCGCGGCCGCAGGAATTTGTTCTTTCCTTTCTGGCTCTGGCGCATACTG
ATTATATTTACAAAGTCCTCATACATTCCAAACCCGCGAAAAAGAGCATCACACATCCAA
AACTTCTTTGTCCGAAGCATCCATGTGAGTCGCCCAAAGCTGACAAACACTCTGGTGTTC
AAGCTATTCCCAAATGGGAAGCATGATATACTTGATGACCCAATTAAGCAATCTGCAGCT
TCCAAGCTTTAATAACTTTTTAAGTGCATTGAATTTGATTCTGAGCATCCTCAGGAAGTA
CATCCAGAGCAAAGTTGCCCAATCGCCCTACTCTAAATAGATTAAGGAGTTTTTTGCCAA
CAAACTCCCAGCCTTTATCACCTAGCTCTATGGAAATCTTCAAAGCTCCCCGCAACTCAT
GCATTTGTATATCTACAAGAGCCTCCATATCCTTCTCGTCTTCAAGATCGCCATCAAAAT
TTGACAATGTGTTTAAGAGAGCTTCACGTACCAGTAGCACAACGTGATCCTTATTGTGAT
CAGAGACTCTCTC
■■Homology search results ■■ -
sp_hit_id Q921Q7
Definition sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus
Align length 23
Score (bit) 30.0
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917749|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_A01.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN...    30   7.0  
sp|Q8T1D4|LTV1_DICDI Protein LTV1 homolog OS=Dictyostelium disco...    30   7.0  
sp|Q54C38|Y9988_DICDI Probable serine/threonine-protein kinase D...    30   9.1  
sp|Q54NM4|OSB10_DICDI Oxysterol-binding protein 10 OS=Dictyostel...    30   9.1  

>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus
           GN=Rin1 PE=1 SV=1
          Length = 763

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 353 LALWKSSKLPATHAFVYLQEPPY 421
           LALW+  +LPATH+F +L    Y
Sbjct: 599 LALWEQRRLPATHSFQHLLRVAY 621


>sp|Q8T1D4|LTV1_DICDI Protein LTV1 homolog OS=Dictyostelium
           discoideum GN=ltv1 PE=3 SV=2
          Length = 496

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -1

Query: 524 ERVSDHNKDHVVLLVREALLNTLSNFDGDLEDEKDM--------EALVDIQMHE 387
           E + D+NK+H  L+V+   L   +NF    E EK++        E LV++  HE
Sbjct: 308 EFIDDYNKNHEPLMVQIQTLKKNNNFIALTEKEKEIILKRDWNKEVLVEVSDHE 361


>sp|Q54C38|Y9988_DICDI Probable serine/threonine-protein kinase
            DDB_G0293292 OS=Dictyostelium discoideum GN=DDB_G0293292
            PE=3 SV=1
          Length = 1371

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +3

Query: 174  MIYLMTQLSNLQ--LPSFNNFLSALNLILSILRKYIQS---KVAQSPYS 305
            + YL+ QL  L   + S++NF+S+L+  +S++  YIQ+   K+   P S
Sbjct: 1032 IFYLIKQLHGLSTIIDSWDNFISSLSKPISLVSNYIQTNLKKILDDPLS 1080


>sp|Q54NM4|OSB10_DICDI Oxysterol-binding protein 10 OS=Dictyostelium
           discoideum GN=osbJ PE=3 SV=1
          Length = 390

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = +3

Query: 87  SKTSLSEASM*VAQS*QTLWCSSYSQMGSMIYLMTQLSNLQLPSFNNFLSALNLILSILR 266
           SK    + S+ ++ S    +    S  GS + ++ ++ N++    + FL  L   LS   
Sbjct: 49  SKQPFYKMSLPISYSEPRSFLEKLSDQGSFLDILLKVKNIENED-DRFLEILKFYLS--- 104

Query: 267 KYIQSKVAQSPYSK*IKEFFANK 335
            +IQ K+A+SP++  I E +  K
Sbjct: 105 GWIQQKIAKSPFNPVIGETYQCK 127
tr_hit_id A9SDL6
Definition tr|A9SDL6|A9SDL6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 79.0
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917749|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_A01.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SDL6|A9SDL6_PHYPA Predicted protein OS=Physcomitrella paten...    79   1e-13
tr|A7PBL0|A7PBL0_VITVI Chromosome chr16 scaffold_10, whole genom...    78   2e-13
tr|Q8S7M9|Q8S7M9_ORYSJ Os10g0572000 protein OS=Oryza sativa subs...    75   2e-12
tr|A2ZAG2|A2ZAG2_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|O82497|O82497_ARATH T12H20.1 protein OS=Arabidopsis thaliana ...    67   5e-10
tr|Q8L607|Q8L607_ARATH Short integuments 2 OS=Arabidopsis thalia...    66   1e-09
tr|O22228|O22228_ARATH Putative uncharacterized protein At2g4167...    66   1e-09
tr|B4FN33|B4FN33_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|B6TY99|B6TY99_MAIZE GTPase family protein OS=Zea mays PE=2 SV=1     64   3e-09
tr|A7PWH7|A7PWH7_VITVI Chromosome chr8 scaffold_34, whole genome...    62   2e-08
tr|Q53KJ1|Q53KJ1_ORYSJ GTP-binding proteins, putative, expressed...    57   7e-07
tr|B8A8Y3|B8A8Y3_ORYSI Putative uncharacterized protein OS=Oryza...    57   7e-07
tr|A3AQT7|A3AQT7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   7e-07
tr|Q9T0C2|Q9T0C2_ARATH Putative uncharacterized protein T4F9.110...    47   6e-04
tr|Q4YI61|Q4YI61_PLABE Pb-fam-2 protein (Fragment) OS=Plasmodium...    36   1.0  
tr|Q22CK1|Q22CK1_TETTH Cyclin, N-terminal domain containing prot...    36   1.0  
tr|Q2A9C4|Q2A9C4_BRAOL Myb family transcription factor OS=Brassi...    34   5.1  
tr|A9EDT6|A9EDT6_9RHOB Putative uncharacterized protein OS=Ocean...    33   6.6  
tr|A1WUD1|A1WUD1_HALHL Flagellin domain protein OS=Halorhodospir...    33   8.6  
tr|B7PH57|B7PH57_IXOSC Centromere protein B, putative (Fragment)...    33   8.6  

>tr|A9SDL6|A9SDL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_183799 PE=4 SV=1
          Length = 338

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 39/73 (53%), Positives = 48/73 (65%)
 Frame = -1

Query: 482 VREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWEFVGKKLLNLFR 303
           VR  +  T   FDG+LED+ DME+LVD QM  +R   K+  E+GD GW  V K+LL LFR
Sbjct: 263 VRNVIAQTCLKFDGNLEDKDDMESLVDEQMITIRRIFKVPSEVGDDGWIRVSKQLLKLFR 322

Query: 302 VGRLGNFALDVLP 264
            GRLG F LD +P
Sbjct: 323 TGRLGRFTLDPVP 335


>tr|A7PBL0|A7PBL0_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014143001
           PE=4 SV=1
          Length = 369

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 39/88 (44%), Positives = 55/88 (62%)
 Frame = -1

Query: 515 SDHNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWE 336
           +DH +D VV  VR  L  T+S+F G LE EKD+  L++ Q   LR A +++ E G+    
Sbjct: 282 TDHTQDFVVREVRRVLFETISSFPGSLEKEKDLSRLIETQFTALREAFRVASESGEDVEN 341

Query: 335 FVGKKLLNLFRVGRLGNFALDVLPEDAQ 252
            V  KLLNL+R GRLG++ LD +P + Q
Sbjct: 342 KVAAKLLNLYRTGRLGHYTLDSVPRNIQ 369


>tr|Q8S7M9|Q8S7M9_ORYSJ Os10g0572000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0095C07.33 PE=4 SV=1
          Length = 370

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 57/85 (67%)
 Frame = -1

Query: 515 SDHNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWE 336
           SDH +D VV  VR+ L +++S+F G LE+E ++++L++ Q   L+ A ++S +L +   +
Sbjct: 279 SDHTQDFVVKAVRQVLFDSISSFKGYLENENELKSLIECQFIALQEAFRVSADLSEDVRK 338

Query: 335 FVGKKLLNLFRVGRLGNFALDVLPE 261
            V  KLLNL+R GRLG + LD  P+
Sbjct: 339 LVAMKLLNLYRTGRLGRYTLDCAPD 363


>tr|A2ZAG2|A2ZAG2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34736 PE=4 SV=1
          Length = 370

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 57/85 (67%)
 Frame = -1

Query: 515 SDHNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWE 336
           SDH +D VV  VR+ L +++S+F G LE+E ++++L++ Q   L+ A ++S +L +   +
Sbjct: 279 SDHTQDFVVKAVRQVLFDSISSFKGYLENENELKSLIECQFIALQEAFRVSADLSEDVRK 338

Query: 335 FVGKKLLNLFRVGRLGNFALDVLPE 261
            V  KLLNL+R GRLG + LD  P+
Sbjct: 339 LVAMKLLNLYRTGRLGRYTLDCAPD 363


>tr|O82497|O82497_ARATH T12H20.1 protein OS=Arabidopsis thaliana
           GN=T12H20.1 PE=4 SV=1
          Length = 377

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 34/81 (41%), Positives = 49/81 (60%)
 Frame = -1

Query: 515 SDHNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWE 336
           +DH +D +V  VR  L  T+S FDG+LEDE  M  L++ Q   LR  L++  E  +    
Sbjct: 285 TDHTQDFIVYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEASEFADL 344

Query: 335 FVGKKLLNLFRVGRLGNFALD 273
            V  K+LNL+R GRLG++ L+
Sbjct: 345 RVASKILNLYRTGRLGHYTLE 365


>tr|Q8L607|Q8L607_ARATH Short integuments 2 OS=Arabidopsis thaliana
           GN=SIN2 PE=2 SV=1
          Length = 386

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 38/83 (45%), Positives = 49/83 (59%)
 Frame = -1

Query: 509 HNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWEFV 330
           H    ++  V+ +L  TLS FDGD EDE D+E L++ Q   L+ ALKI  +  +     V
Sbjct: 291 HYVGDMISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARL-MV 349

Query: 329 GKKLLNLFRVGRLGNFALDVLPE 261
            KK L LFR GRLG F LD +PE
Sbjct: 350 SKKFLTLFRTGRLGPFILDDVPE 372


>tr|O22228|O22228_ARATH Putative uncharacterized protein At2g41670
           OS=Arabidopsis thaliana GN=At2g41670 PE=4 SV=1
          Length = 391

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 38/83 (45%), Positives = 49/83 (59%)
 Frame = -1

Query: 509 HNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWEFV 330
           H    ++  V+ +L  TLS FDGD EDE D+E L++ Q   L+ ALKI  +  +     V
Sbjct: 296 HYVGDMISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARL-MV 354

Query: 329 GKKLLNLFRVGRLGNFALDVLPE 261
            KK L LFR GRLG F LD +PE
Sbjct: 355 SKKFLTLFRTGRLGPFILDDVPE 377


>tr|B4FN33|B4FN33_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 379

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 32/91 (35%), Positives = 53/91 (58%)
 Frame = -1

Query: 515 SDHNKDHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWE 336
           SDH +D VV  VR+ L  T+S+F+GDL    ++  L+  Q+  L+   K+  E  +   +
Sbjct: 283 SDHTQDSVVKAVRQVLFETISSFNGDLGQVDELRRLIGHQLVNLQQVFKVLTEPSENICK 342

Query: 335 FVGKKLLNLFRVGRLGNFALDVLPEDAQNQI 243
            +  KL+NL+R GRLG + L+ +P+  Q  +
Sbjct: 343 PIATKLVNLYRTGRLGRYTLEHVPDVRQEVV 373


>tr|B6TY99|B6TY99_MAIZE GTPase family protein OS=Zea mays PE=2 SV=1
          Length = 369

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = -1

Query: 494 VVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWEFVGKKLL 315
           +V  V+ AL  T  NF G++E+E ++E L+D+Q+ ELR   +I  +  D+      KKLL
Sbjct: 288 LVTEVQRALCRTFLNFTGNIEEESELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLL 347

Query: 314 NLFRVGRLGNFALDVLPEDAQ 252
            LFR G+LG F LD LP+ ++
Sbjct: 348 TLFRSGKLGPFILDDLPDGSE 368


>tr|A7PWH7|A7PWH7_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025616001
           PE=4 SV=1
          Length = 376

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 35/80 (43%), Positives = 52/80 (65%)
 Frame = -1

Query: 500 DHVVLLVREALLNTLSNFDGDLEDEKDMEALVDIQMHELRGALKISIELGDKGWEFVGKK 321
           + +V  V+ AL  TLS F+G+LE+E D+E+L++ Q  +L+ A+KI      +    V KK
Sbjct: 292 EDLVTEVQCALHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIP-HKASEARTMVSKK 350

Query: 320 LLNLFRVGRLGNFALDVLPE 261
           LL LFR G+LG F LD +P+
Sbjct: 351 LLTLFRTGKLGPFILDDVPD 370