BP917765 |
Clone id |
YMU001_000105_B08 |
Library |
YMU01 |
Length |
360 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000105_B08. |
Accession |
BP917765 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATG GCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCT CTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTA TCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCC TTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCT AAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40519 |
Definition |
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum |
Align length |
71 |
Score (bit) |
84.0 |
E-value |
2.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917765|Adiantum capillus-veneris mRNA, clone: YMU001_000105_B08. (360 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 84 2e-16 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 84 3e-16 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 82 6e-16 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 80 2e-15 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 80 4e-15 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 76 5e-14 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 75 1e-13 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 3.8 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 3.8 sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS... 29 6.4 sp|P0C582|M2OM_NEUCR Putative mitochondrial 2-oxoglutarate/malat... 29 8.4 sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 h... 29 8.4
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/71 (57%), Positives = 52/71 (73%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 328 KKYGANVDGYS 360 KYGANVDGYS Sbjct: 78 DKYGANVDGYS 88
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 83.6 bits (205), Expect = 3e-16 Identities = 41/73 (56%), Positives = 52/73 (71%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 321 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 322 YTKKYGANVDGYS 360 Y KYGANVDGYS Sbjct: 78 YVDKYGANVDGYS 90
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 82.4 bits (202), Expect = 6e-16 Identities = 41/71 (57%), Positives = 51/71 (71%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 328 KKYGANVDGYS 360 KYGANVDGYS Sbjct: 80 DKYGANVDGYS 90
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 80.5 bits (197), Expect = 2e-15 Identities = 41/71 (57%), Positives = 49/71 (69%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 328 KKYGANVDGYS 360 KYGANVDGYS Sbjct: 82 DKYGANVDGYS 92
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 79.7 bits (195), Expect = 4e-15 Identities = 40/73 (54%), Positives = 50/73 (68%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 321 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 322 YTKKYGANVDGYS 360 + KYGANVDGYS Sbjct: 81 FVDKYGANVDGYS 93
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 76.3 bits (186), Expect = 5e-14 Identities = 39/70 (55%), Positives = 48/70 (68%) Frame = +1
Query: 151 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 330 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 331 KYGANVDGYS 360 KYGANVDGYS Sbjct: 83 KYGANVDGYS 92
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 75.1 bits (183), Expect = 1e-13 Identities = 42/79 (53%), Positives = 48/79 (60%) Frame = +1
Query: 124 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 303 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 304 GKGVYQYTKKYGANVDGYS 360 GKGVYQ+ KYGANVDGYS Sbjct: 72 GKGVYQFADKYGANVDGYS 90
>sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1 Length = 146
Score = 30.0 bits (66), Expect = 3.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1
Query: 124 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTK 234 KSE SG+++ G SL KL+ ++ + AS + I K Sbjct: 103 KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAK 139
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.0 bits (66), Expect = 3.8 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = +1
Query: 127 SEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 306 S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K KG Sbjct: 37 SQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSKFKG 93
Query: 307 KGVYQY 324 K V Y Sbjct: 94 KPVVVY 99
>sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS=Sorangium cellulosum (strain So ce56) GN=pnp PE=3 SV=1 Length = 757
Score = 29.3 bits (64), Expect = 6.4 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1
Query: 139 GVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASG 291 G ++ +P+ P+LS + RI VK + +GP G T KG +D +G Sbjct: 536 GKMLETLPTTRPELSQYAPRITTVRVKPDQIRLIIGPGGKT-IKGIVDQTG 585
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
82 |
Score (bit) |
98.2 |
E-value |
2.0e-19 |
Report |
|