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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917769
Clone id YMU001_000105_C01
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGCATCAGAACTGTAAACACAACCAGGTAGTTAGCTCTGCAAGCTACTCCAACCATACC
CTTGCCTACTATTCGAAAGCGTGTATTGATCATAAGGCATCTCAAAATGGCCCAGTCTGT
CTGAAGGCAAACCTACATTGTAATTTTCAACGCCTGGACCCAGACCAAGCCCAGAAATTC
CAAGCCCCGGTTTTCTTGCCTGGATCATTTGATGCTGATATGGATTGACTCCTGCAATCC
CCTGAGATCCTTGAACATGGTTTCCTGGAAACCATCTGTCTGCCAGAGGGCTGATCCTTG
GACCAGTGATTCTGGGATCAGGCATGCATTGACTTGGGTATGAAACCCATTTGTATTGAC
TCTGGATAACCTGCAGAAACAGAGGGAAGCACCCTGTATGTTCCTGCCAAACCAGAAGAG
CCCTGTTCAAAGTGTCCAGAAAGATGGCTGTTGCCAGCTCGAAGAAACTCTTCTTGAAAT
GGAAATAAGAGATTGTTCGGCGCATACATGCCTGTGGCATAGAGCGA
■■Homology search results ■■ -
sp_hit_id A2RM21
Definition sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363)
Align length 64
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917769|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C01.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lac...    32   2.4  
sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lac...    32   2.4  
sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lac...    32   2.4  
sp|O14111|YEJF_SCHPO C2 domain-containing protein C31G5.15 OS=Sc...    31   3.2  
sp|P08793|XDH_CALVI Xanthine dehydrogenase OS=Calliphora vicina ...    31   3.2  
sp|O73630|NFKB2_XENLA Nuclear factor NF-kappa-B p100 subunit OS=...    31   4.1  
sp|A8G2Q0|GLMM_PROM2 Phosphoglucosamine mutase OS=Prochlorococcu...    30   5.4  
sp|Q9H210|OR2D2_HUMAN Olfactory receptor 2D2 OS=Homo sapiens GN=...    30   9.2  
sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcriptio...    30   9.2  
sp|Q31CU1|GLMM_PROM9 Phosphoglucosamine mutase OS=Prochlorococcu...    30   9.2  

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis
           subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1
          Length = 380

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
 Frame = -1

Query: 524 LYATGMYAPNNLLFPFQEEFLRAGN------SHLSGHFEQG------SSGLAGTYRVLPS 381
           +Y T  Y  N L  P + E+ R+GN        L    E G      SSGLAG + VL  
Sbjct: 26  IYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSL 85

Query: 380 VSAG 369
            SAG
Sbjct: 86  FSAG 89


>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis
           subsp. cremoris GN=metC PE=1 SV=1
          Length = 380

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
 Frame = -1

Query: 524 LYATGMYAPNNLLFPFQEEFLRAGN------SHLSGHFEQG------SSGLAGTYRVLPS 381
           +Y T  Y  N L  P + E+ R+GN        L    E G      SSGLAG + VL  
Sbjct: 26  IYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSL 85

Query: 380 VSAG 369
            SAG
Sbjct: 86  FSAG 89


>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis
           subsp. lactis GN=metC PE=3 SV=1
          Length = 380

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
 Frame = -1

Query: 524 LYATGMYAPNNLLFPFQEEFLRAGN------SHLSGHFEQG------SSGLAGTYRVLPS 381
           +Y T  Y  N L  P + E+ R+GN        L    E G      SSGLAG + VL  
Sbjct: 26  IYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSL 85

Query: 380 VSAG 369
            SAG
Sbjct: 86  FSAG 89


>sp|O14111|YEJF_SCHPO C2 domain-containing protein C31G5.15
           OS=Schizosaccharomyces pombe GN=SPAC31G5.15 PE=2 SV=1
          Length = 980

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 393 GASLCFCRLSRVNTNGFHTQVNACLIPESLVQG 295
           G S+C  RL+  + + FH+ VN C+ P + ++G
Sbjct: 821 GGSICISRLAPQDYHRFHSPVNGCIGPITKIEG 853


>sp|P08793|XDH_CALVI Xanthine dehydrogenase OS=Calliphora vicina
           GN=XDH PE=2 SV=1
          Length = 1353

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -3

Query: 393 GASLCFCRLSRVNT---NGFHTQVNACLIPESLVQGSALWQTDGFQETMFKDLRGLQESI 223
           G   C   +SR++T      H  VNACL P   + GSA+   +G   T  + L  +QE +
Sbjct: 60  GCGACTVMISRIDTLTNRIKHIAVNACLTPVCAMHGSAVTTVEGIGSTRTR-LHPVQERL 118


>sp|O73630|NFKB2_XENLA Nuclear factor NF-kappa-B p100 subunit
           OS=Xenopus laevis GN=nfkb2 PE=2 SV=1
          Length = 958

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 493 ISYFHFKKSFFELATAIFLDTLNRALLVWQEHTGCFPLFLQVIQSQYKWVSYPSQCMPDP 314
           ++  H + S  E    I L   N+ +L    H    PL L VI  QY  V++  +   DP
Sbjct: 507 LAVIHGQSSVIEQLVQIILSIPNQQILNMSNHLQQTPLHLGVITKQYSVVAFLLKAGADP 566

Query: 313 RI 308
            I
Sbjct: 567 TI 568


>sp|A8G2Q0|GLMM_PROM2 Phosphoglucosamine mutase OS=Prochlorococcus
           marinus (strain MIT 9215) GN=glmM PE=3 SV=1
          Length = 450

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 88  DHKASQNGPVCLKANLHCNFQRLDPDQAQKFQAPVFLPGSFDADMD 225
           D K   N    LK N++C    L+P +    ++P  +  SFD D D
Sbjct: 195 DVKVINNSKNGLKINMNCGSTNLEPLKKALIESPAHMGFSFDGDAD 240


>sp|Q9H210|OR2D2_HUMAN Olfactory receptor 2D2 OS=Homo sapiens
           GN=OR2D2 PE=2 SV=4
          Length = 308

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 221 WIDSCNPLRSLNMVSWKPSVCQRADPWTS 307
           ++  CNPLR  N+++WK  V      WTS
Sbjct: 123 YVAICNPLRYPNIMTWKVCVQLATGSWTS 151


>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription
            subunit 12 OS=Caenorhabditis briggsae GN=dpy-22 PE=3 SV=1
          Length = 3941

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 340  YPSQCMPDPRITGPRISPLADRWFPGNHVQGSQGIAGVNPYQHQMI 203
            YP Q    P+  G    P      P N +QG Q  AG+  YQ+Q +
Sbjct: 3264 YPQQQQQQPQQPGTSQIPNTTPTRPANPMQGQQQQAGMQNYQNQPV 3309


>sp|Q31CU1|GLMM_PROM9 Phosphoglucosamine mutase OS=Prochlorococcus
           marinus (strain MIT 9312) GN=glmM PE=3 SV=1
          Length = 450

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1   GHQNCKHNQVVSSASYSNHTLA---YYSKACIDHKASQNGPVCLKANLHCNFQRLDPDQA 171
           G +N    +++    Y + T      +     D +   N    LK N++C    L+P + 
Sbjct: 163 GGENLSGMKIILDTCYGSATTCAKKIFQSLGADVRVLNNSKNGLKINVNCGSTNLEPLKK 222

Query: 172 QKFQAPVFLPGSFDADMD 225
              Q+P  +  SFD D D
Sbjct: 223 ALRQSPADMGFSFDGDSD 240
tr_hit_id B3MRR4
Definition tr|B3MRR4|B3MRR4_DROAN GF20947 OS=Drosophila ananassae
Align length 73
Score (bit) 38.5
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917769|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C01.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3MRR4|B3MRR4_DROAN GF20947 OS=Drosophila ananassae GN=GF2094...    39   0.21 
tr|B6KER1|B6KER1_TOXGO SET domain-containing protein / Bromodoma...    35   3.0  
tr|Q0RZV7|Q0RZV7_RHOSR Probable secreted lipase OS=Rhodococcus s...    33   8.8  
tr|Q0RZ20|Q0RZ20_RHOSR Probable lipase OS=Rhodococcus sp. (strai...    33   8.8  
tr|Q6REP0|Q6REP0_9NOCA Putative secreted lipase OS=Rhodococcus s...    33   8.8  

>tr|B3MRR4|B3MRR4_DROAN GF20947 OS=Drosophila ananassae GN=GF20947
           PE=4 SV=1
          Length = 419

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = -3

Query: 414 WFGRNIQGASLCFCRLSRVN-------TNGFHTQVNACLIPESLVQGSALWQTDGFQE-- 262
           WF RN+   + CF  +  +N       T G H     CL    +V  S LW T+ F+E  
Sbjct: 125 WFDRNVGMLADCFPNIQGINLTGDNFYTTGLHFSKWECLTHLYVVNASELWTTENFKEIC 184

Query: 261 TMFKDLRGLQESI 223
             FK+L+ L   I
Sbjct: 185 EKFKNLKALSIDI 197


>tr|B6KER1|B6KER1_TOXGO SET domain-containing protein /
           Bromodomain-containing protein OS=Toxoplasma gondii ME49
           GN=TGME49_026810 PE=4 SV=1
          Length = 7551

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
 Frame = -1

Query: 518 ATGMYAPNNLLFPFQEEFLRAGNSHLSGHFEQGSSGLAGTYRVLPS--VSAGYPES---- 357
           +  +Y  +    PF E F  +G+ H SGHF  G S  A   R LPS    A + E+    
Sbjct: 91  SNSLYTDSQGTLPFSEAFTGSGSGHFSGHF-PGLSVCAEPSRQLPSGPSPASWKENGVVT 149

Query: 356 ---------IQMGFIPKSMHA*SQNHWSK--DQPSGRQMVSRKPCSRISGDCRSQSISAS 210
                    +Q+  +P    +  ++ W +   Q SGR   S +   R    C +  +  +
Sbjct: 150 PSGSAAVAPLQVERVPAPPASRLRSRWDQRPSQTSGRAQGSNENRERPGEACAASPVQPA 209

Query: 209 NDP 201
           + P
Sbjct: 210 SPP 212


>tr|Q0RZV7|Q0RZV7_RHOSR Probable secreted lipase OS=Rhodococcus sp.
           (strain RHA1) GN=RHA1_ro08132 PE=4 SV=1
          Length = 338

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 127 PSDRLGHFEMPYDQYTL 77
           PS++ GHF MPYD+YTL
Sbjct: 286 PSNQSGHFRMPYDEYTL 302


>tr|Q0RZ20|Q0RZ20_RHOSR Probable lipase OS=Rhodococcus sp. (strain
           RHA1) GN=RHA1_ro08422 PE=4 SV=1
          Length = 337

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 127 PSDRLGHFEMPYDQYTL 77
           PS++ GHF MPYD+YTL
Sbjct: 286 PSNQSGHFRMPYDEYTL 302


>tr|Q6REP0|Q6REP0_9NOCA Putative secreted lipase OS=Rhodococcus sp.
           DK17 GN=PDK3.007 PE=4 SV=1
          Length = 271

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 127 PSDRLGHFEMPYDQYTL 77
           PS++ GHF MPYD+YTL
Sbjct: 219 PSNQSGHFRMPYDEYTL 235