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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917770
Clone id YMU001_000105_C02
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGACATATGGAGGTAACCTTCCCTGTACAGTTTTATTATATCCCCTTGTGACATATTAGT
CAATGTGTGAAGCATGTTTGCCGGCAGAATCTGACTGCATCATGAAGGATGGGTATGGTG
ATGATTGCAGGTGAAATTTGACTGCATCATGTAGGTTTGGCATGGTGACGTTTTGCAGGC
GGAACTTGCCTGCATCACAAAGGATGGGCATGTTGGTAGGAAGAAGAAGAACAATAAACA
AGGTGCAATCATACCTTCATGAGGAACTTGCAGCTGCAATGGTTTTTGAATCCCTGAACC
AGCAGTCAGGGAGGGGTTTTGCAGCTCTTTGCATGGGAAAGAACCCATGTGGGGGGGAGA
GCAGCCAACTCAAAACTGGTTGAAGTAAGCGGACGGACTTTGGGCATAAAGCAGTGGATT
TGGGGGGCCTGCAGTTGTTGAAATGTGGAGAGAAGTGTTCCGTGTGAGAACACACCCTTA
ATTAGCAGAGTAGTCAATACACTTATGCCTTTCTCTAGGAATACTCATCCTACAGATAAC
GG
■■Homology search results ■■ -
sp_hit_id A0AV02
Definition sp|A0AV02|S12A8_HUMAN Solute carrier family 12 member 8 OS=Homo sapiens
Align length 45
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917770|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C02.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0AV02|S12A8_HUMAN Solute carrier family 12 member 8 OS=Homo ...    32   2.6  
sp|P36042|YKU2_YEAST Putative uncharacterized protein YKL202W OS...    31   3.4  
sp|Q19LI2|A1BG_MOUSE Alpha-1B-glycoprotein OS=Mus musculus GN=A1...    31   3.4  
sp|O14209|YDT4_SCHPO Uncharacterized aminotransferase C6B12.04c ...    30   5.8  
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1...    30   5.8  
sp|Q863G7|COX82_TRACR Cytochrome c oxidase polypeptide 8A, mitoc...    30   5.8  
sp|A1RWR5|RL30_THEPD 50S ribosomal protein L30P OS=Thermofilum p...    30   7.6  
sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type recepto...    30   7.6  
sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g2594...    30   7.6  
sp|Q862Z8|COX82_THEGE Cytochrome c oxidase polypeptide 8A, mitoc...    30   9.9  
sp|Q8SQ78|COX82_PAPHA Cytochrome c oxidase polypeptide 8A, mitoc...    30   9.9  
sp|Q863G9|COX82_PAPAN Cytochrome c oxidase polypeptide 8A, mitoc...    30   9.9  

>sp|A0AV02|S12A8_HUMAN Solute carrier family 12 member 8 OS=Homo
           sapiens GN=SLC12A8 PE=2 SV=2
          Length = 714

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +2

Query: 269 CSCNGF*IPEPAVREG----FCSS--LHGKEPMWGGEQPTQNWLK 385
           CSC+   +PEP +REG     CS   L  K P +G E P Q  L+
Sbjct: 408 CSCSLTPVPEPVLREGAEGLHCSEHLLLEKAPSYGSEGPAQRVLE 452


>sp|P36042|YKU2_YEAST Putative uncharacterized protein YKL202W
           OS=Saccharomyces cerevisiae GN=YKL202W PE=5 SV=1
          Length = 193

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
 Frame = -2

Query: 451 SPHFNNCRPP--------KSTALCPKSVRLLQPVLSWLLSPPHGFFPMQRAAK--PLPDC 302
           SP FN C PP        +S++  P        + S   S P  FFP+ R++    L   
Sbjct: 34  SPTFNCCAPPPASFFPLLRSSSFLPLPASSFLHLHSSCFSLPASFFPLLRSSSFLHLHSS 93

Query: 301 WF----RDSKTIAAASSS*RYDCTLFIVLLLPTNMPILCDAGKFRLQNVTMPNLHDAVKF 134
           +F      S  +  ASSS          LLLP++   L  A  F L    +P+    +  
Sbjct: 94  YFLHLHSSSFLLLPASSS----------LLLPSSFSPLPPASSFLL----LPSFSSLLLP 139

Query: 133 HLQSSPYPSF 104
              S P PSF
Sbjct: 140 SFSSLPLPSF 149


>sp|Q19LI2|A1BG_MOUSE Alpha-1B-glycoprotein OS=Mus musculus GN=A1bg
           PE=1 SV=1
          Length = 512

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 423 PNPLLYAQSPSAYFNQF*VGCSPPHMGSFPCKELQNPSLTAGSGIQKPLQLQV 265
           P  +   +S SAY     VG  P H G++ C+    P  T  SGI  P+++ V
Sbjct: 460 PFAVASTRSTSAYLKLLFVG--PQHAGNYSCRYTALPPFTFESGISDPVEVIV 510


>sp|O14209|YDT4_SCHPO Uncharacterized aminotransferase C6B12.04c
           OS=Schizosaccharomyces pombe GN=SPAC6B12.04c PE=2 SV=1
          Length = 421

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -1

Query: 365 AALPPTWVLSHAKS--CKTPP*LLVQGFKNHCSCKFLM---KV*LHLVYCSSSSYQHAHP 201
           A+ P  W L +  +  CK PP  L QGF N+   KF++   K  +  V C+  S+    P
Sbjct: 14  ASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKKSIDEVACNQYSHTRGRP 73


>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1
            OS=Drosophila melanogaster GN=RpII215 PE=1 SV=4
          Length = 1887

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
 Frame = -3

Query: 423  PNPLLYAQ----SPSAYFNQF*VGCSPPHMGSFPCKELQNPSLT---------AGSGIQK 283
            P   LYA     S +  FN    G SP   G  P   + +P++          +GS I  
Sbjct: 1607 PTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYS 1666

Query: 282  PLQLQVPHEGMIAPCXXXXXXLPTCPSFVMQASSACKTSPC 160
            P     P     +P        PT PS+   + S   TSPC
Sbjct: 1667 PGNAYSPSSSNYSP--NSPSYSPTSPSYSPSSPSYSPTSPC 1705


>sp|Q863G7|COX82_TRACR Cytochrome c oxidase polypeptide 8A,
           mitochondrial OS=Trachypithecus cristatus GN=COX8A PE=3
           SV=1
          Length = 69

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
 Frame = -1

Query: 506 ISVLTTLLIKGVFSHGTLLSTFQQLQAPQ--IHCFMP--------KVRPLTSTSFELAAL 357
           +SVLT+LL++G      L  + ++L  P+  IH   P        K   LTS  F    L
Sbjct: 1   MSVLTSLLLRG------LTGSARRLPVPRAKIHSMPPEEELGIMEKAIALTSC-FVTFLL 53

Query: 356 PPTWVLSHAKSCKTP 312
           P  W+LSH +  K P
Sbjct: 54  PAGWILSHLEDYKRP 68


>sp|A1RWR5|RL30_THEPD 50S ribosomal protein L30P OS=Thermofilum
           pendens (strain Hrk 5) GN=rpl30p PE=3 SV=1
          Length = 156

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 198 QRMGMLVGRRRT----INKVQSYLHEELAAAMVFESLNQQSGRGFAALCMGKNPCGGESS 365
           +R G + G +R     + K+     EELA A++   ++ +   G   +   + P GG   
Sbjct: 70  KRRGRITGNKRLTEEYLKKIGFNSFEELAEALISGKVSLEDLPGVKPVFRLRPPSGGFRG 129

Query: 366 QLKTG*SKRTDFGHKAVDLGGLQL 437
            ++   + R + G++  D+  L L
Sbjct: 130 TIRRNINARGELGYRGADINNLVL 153


>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Mus musculus GN=Celsr3 PE=2 SV=1
          Length = 3301

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +1

Query: 220  EEEEQ*TRCNHTFMRNLQLQWFLNP*TSSQGGVLQLFAWERTHVGGRAANSKLVEVSGRT 399
            +EE    R +H FM +L    F +  T + GG LQ    ++ HVGG   +SK     G  
Sbjct: 1845 QEEPGGRRGHHIFMVSLDFTLFQD--TMAMGGELQGLKVKQLHVGGLPPSSKEEGHQG-L 1901

Query: 400  LGIKQWIW 423
            +G  Q +W
Sbjct: 1902 VGCIQGVW 1909


>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940
           OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1
          Length = 601

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = -3

Query: 444 ISTTAGPPNPLLYAQSPSAYFNQF*VGCSPPHMGSFPCKELQNPSLTAGSGIQKPLQLQV 265
           I TTA PPNP    Q P A  N      +PP       ++ Q   +T     Q P     
Sbjct: 499 IDTTAAPPNPFQMQQDPFAMSNNI----APPTNVQMAMQQQQQQQMTMMH--QSPYNYTH 552

Query: 264 PHE 256
           PH+
Sbjct: 553 PHD 555


>sp|Q862Z8|COX82_THEGE Cytochrome c oxidase polypeptide 8A,
           mitochondrial OS=Theropithecus gelada GN=COX8A PE=3 SV=1
          Length = 69

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
 Frame = -1

Query: 506 ISVLTTLLIKGVFSHGTLLSTFQQLQAPQ--IHCFMP--------KVRPLTSTSFELAAL 357
           +SVLT+LL++G      L  + ++L  P+  +H   P        K   LTS    L  L
Sbjct: 1   MSVLTSLLLRG------LTGSARRLPVPRAKVHSMPPEEELGTLEKAIALTSCFVSLF-L 53

Query: 356 PPTWVLSHAKSCKTP 312
           P  W+LSH +  K P
Sbjct: 54  PAGWILSHLEDYKRP 68
tr_hit_id B0CA78
Definition tr|B0CA78|B0CA78_ACAM1 Putative uncharacterized protein OS=Acaryochloris marina (strain MBIC 11017)
Align length 51
Score (bit) 35.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917770|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C02.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CA78|B0CA78_ACAM1 Putative uncharacterized protein OS=Acary...    35   2.6  
tr|A9SAI8|A9SAI8_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.3  
tr|Q0QJ95|Q0QJ95_9NEOP ATP synthase subunit a OS=Xenos vesparum ...    35   3.3  
tr|B7ZE90|B7ZE90_9NEOP ATPase subunit 6 OS=Xenos vesparum GN=atp...    35   3.3  

>tr|B0CA78|B0CA78_ACAM1 Putative uncharacterized protein
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_1644
           PE=4 SV=1
          Length = 298

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -1

Query: 509 GISVLTTLLIKGVFSHGTLLSTFQQLQAPQIHCFMPKVRPLTSTSFELAAL 357
           G+++ TT+L++ + S+GT L  +QQ + P    F P +R    T+  L+ L
Sbjct: 35  GVAIATTILVQALASYGTYL--YQQRRQPNDRAFNPSIRSALITALGLSLL 83


>tr|A9SAI8|A9SAI8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76755 PE=4 SV=1
          Length = 241

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +3

Query: 162 MVTFCRRNLPASQRMGMLVGRRRTINKVQSYLHEELAAAMVFESLNQQSGRGFAALCMGK 341
           +V  CRRNLP   R   +VGRR  + +V      E+       +  QQ  R       G 
Sbjct: 69  LVELCRRNLPTQSRGSAIVGRRIVVTRV-----AEVEEHRTKSTRAQQEVRCGERKRAGF 123

Query: 342 NPCGGESSQLKTG*SKRTDFGHK 410
           +PCG + +        R   GH+
Sbjct: 124 SPCGPDCADASIVSGIRRPLGHE 146


>tr|Q0QJ95|Q0QJ95_9NEOP ATP synthase subunit a OS=Xenos vesparum
           PE=3 SV=1
          Length = 204

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 503 SVLTTLLIKGVFSHGTLLSTFQQLQAPQIHCFMPKVRPLTS-TSFELAALPPTWVLSHAK 327
           + +   L K VF +  + S F  +     +  MP + PL+S  SF ++   P W+ S  K
Sbjct: 45  NTMENFLKKMVFMNKVIFSVFMMVFISNFYGQMPHIFPLSSHLSFTMSLALPLWLSSMIK 104

Query: 326 SCK 318
           SCK
Sbjct: 105 SCK 107


>tr|B7ZE90|B7ZE90_9NEOP ATPase subunit 6 OS=Xenos vesparum GN=atp6
           PE=4 SV=1
          Length = 204

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 503 SVLTTLLIKGVFSHGTLLSTFQQLQAPQIHCFMPKVRPLTS-TSFELAALPPTWVLSHAK 327
           + +   L K VF +  + S F  +     +  MP + PL+S  SF ++   P W+ S  K
Sbjct: 45  NTMENFLKKMVFMNKVIFSVFMMVFISNFYGQMPHIFPLSSHLSFTMSLALPLWLSSMIK 104

Query: 326 SCK 318
           SCK
Sbjct: 105 SCK 107