BP917777
Clone id YMU001_000105_C11
Library
Length 237
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GATTCTAGCAAGTCAAACCCTAAGGGAACAACTTCCATGAGTGCAGGTCCTTCTCAGCCT
ACATTTGATGTGAAATTCTTGTATTTGAAGTTTCAATTTGAAAATGTGCTTAAAGCCAAA
ATCTATAAGGATGGAATGGACCGTTACTGTGTTAAGTTGGAAAATAAGCCGAGCGAGTTC
AAAGACCTTGTAGATGTTGATTATGACGGGGATAGATAGTTTGACCGAGAGGGAATG
■■Homology search results ■■ -
sp_hit_id Q8X092
Definition sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 OS=Neurospora crassa
Align length 31
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917777|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C11.
(237 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 OS=Ne... 30 4.9
sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fasciculari... 29 8.4
sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RB... 29 8.4
sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4... 29 8.4

>sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11
OS=Neurospora crassa GN=alg-11 PE=3 SV=1
Length = 556

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1

Query: 147 VTVHSILIDFGFKHIFKLKLQIQEFHIKCRL 55
V V S+ D+ K ++KL+L + E HIK R+
Sbjct: 395 VLVGSVRDDYDSKRVYKLRLLVNELHIKDRV 425


>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis
GN=RBM4 PE=2 SV=1
Length = 364

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1

Query: 1 DSSKSNPKGTTSMSAGPSQPTFDVKFLYLKF-QFENVLKAKIYKDGMDRYCVKLENKPSE 177
++SK+ K +T + G PT K L KF ++ V++ I KD + + E+
Sbjct: 68 EASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEA 127

Query: 178 FKDLVDVDYDGDR 216
+ L + ++ G R
Sbjct: 128 IRGLDNTEFQGKR 140


>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4
PE=1 SV=1
Length = 364

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1

Query: 1 DSSKSNPKGTTSMSAGPSQPTFDVKFLYLKF-QFENVLKAKIYKDGMDRYCVKLENKPSE 177
++SK+ K +T + G PT K L KF ++ V++ I KD + + E+
Sbjct: 68 EASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEA 127

Query: 178 FKDLVDVDYDGDR 216
+ L + ++ G R
Sbjct: 128 IRGLDNTEFQGKR 140


>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4
PE=2 SV=1
Length = 362

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1

Query: 1 DSSKSNPKGTTSMSAGPSQPTFDVKFLYLKF-QFENVLKAKIYKDGMDRYCVKLENKPSE 177
++SK+ K +T + G PT K L KF ++ V++ I KD + + E+
Sbjct: 68 EASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEA 127

Query: 178 FKDLVDVDYDGDR 216
+ L + ++ G R
Sbjct: 128 IRGLDNTEFQGKR 140


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917777|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_C11.
(237 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******