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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917780
Clone id YMU001_000105_D03
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTGATATTGTGCGTCGCACCTTGAGCTTCATATATCCTTTGCATTCTCCTAGTCTTGC
TTCTTTTGCTGCTTTGGAGACACGTTGTATGGCCATCCATGGTGACTATATTGAGATTGT
AGCAGCTTTCAAAGCTCAAGTGCGTCGTCCACGTTGGATACCAGTCCATGATTTTACGTC
TCGTGTGACCAATTCTCCTTTTTCATACACTCGAGGAGGTAAGAGTGTACCTTAGGCAAC
TGATTTGATCTTTTTGGACCTCCCATTCGGAGGCTCCCATTCTGGATTGTCCTCTGGTCC
ATCTTGGGACTTGCTTAGGGAGGAGCATGTGCGTGCTGGGATTCACCTGTCATTTTTGAC
ATTGGCGGATGCAGGCTGGTTGCTAATCATGGTGTCCATGGCAGGTGATGCTATTGGTTG
GGTTGAGAGATTTCGTCAAGCTTCACAGATGGTGGTCCATCGACGCATTGTAGTGATACA
TCACGACGCGTACGATTACATGGAG
■■Homology search results ■■ -
sp_hit_id Q89A16
Definition sp|Q89A16|HSCA_BUCBP Chaperone protein hscA OS=Buchnera aphidicola subsp. Baizongia pistaciae
Align length 57
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917780|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D03.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89A16|HSCA_BUCBP Chaperone protein hscA OS=Buchnera aphidico...    33   1.00 
sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4       32   1.3  
sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid hormone-re...    32   1.3  
sp|Q6SPE9|SAMD1_RABIT Atherin OS=Oryctolagus cuniculus GN=SAMD1 ...    32   2.2  
sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid hormone-re...    31   3.8  
sp|Q9H5V8|CDCP1_HUMAN CUB domain-containing protein 1 OS=Homo sa...    30   4.9  
sp|Q5BEN5|STU1_EMENI Protein stu1 OS=Emericella nidulans GN=stu1...    30   8.4  
sp|Q8WWI1|LMO7_HUMAN LIM domain only protein 7 OS=Homo sapiens G...    30   8.4  

>sp|Q89A16|HSCA_BUCBP Chaperone protein hscA OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=hscA PE=3 SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 265 WEVQKDQISCLRYTLTSSSV*KRRIGHTRRKIMDWYPTWTTHLSFESCYNLNIVTMD 95
           WE QK  I+  + T+ S    KR IGH+  +I   YP    HL+++    L+ +  D
Sbjct: 68  WEAQKQAINDPKNTIISI---KRLIGHSYDEINKLYPNLPYHLTYDKNGILSFIVQD 121


>sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4
          Length = 578

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -2

Query: 435 RNLSTQPIASPAMDTMISNQPASANVKNDR*IPARTCSSLSKSQDGPEDNP---EWEPPN 265
           RN S +P + P  +  ++ QP+S + + D      +   +SK+ DGPE NP     EP +
Sbjct: 217 RNQSPEPSSGPRGEVPLAKQPSSPSGEGDG--GELSPQGVSKTLDGPESNPLEVHEEPLS 274

Query: 264 GR 259
           G+
Sbjct: 275 GK 276


>sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Pongo abelii
           GN=PTH1R PE=2 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -2

Query: 408 SPAMDTMISNQPASANVKNDR*IPARTCSSLSKSQDGPEDNP-----EWE 274
           +PA++T+ +  PA+A  K+D  +   +CS L +   GPE  P     EWE
Sbjct: 543 TPALETLETTPPATAAPKDDGFLNG-SCSGLDEEASGPEQPPALLQEEWE 591


>sp|Q6SPE9|SAMD1_RABIT Atherin OS=Oryctolagus cuniculus GN=SAMD1
           PE=2 SV=1
          Length = 550

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 374 LHPPMSKMTGESQHAHAPP*ASPKMDQRTIQNGSLRMGGPKRSNQLPKVHSYL 216
           L PP        Q    PP   P+  Q   + G+ R GGP R   L +V  YL
Sbjct: 215 LPPPPQPPAPPQQQQQPPPPPPPQQPQPPPEGGAARAGGPARPVSLREVVRYL 267


>sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Homo sapiens
           GN=PTH1R PE=1 SV=1
          Length = 593

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 408 SPAMDTMISNQPASANVKNDR*IPARTCSSLSKSQDGPEDNP-----EWE 274
           +PA++T+ +  PA A  K+D  +   +CS L +   GPE  P     EWE
Sbjct: 542 TPALETLETTPPAMAAPKDDGFLNG-SCSGLDEEASGPERPPALLQEEWE 590


>sp|Q9H5V8|CDCP1_HUMAN CUB domain-containing protein 1 OS=Homo
           sapiens GN=CDCP1 PE=1 SV=1
          Length = 836

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 346 VNPSTHMLLPKQVPRWTRGQSRMGASEW--EVQKDQISCLRYTLTSSSV 206
           V P T   +  + P W RG   + +  W   V +DQ++CL +    S V
Sbjct: 549 VTPDTKSKVYLRTPNWDRGLPSLTSVSWNISVPRDQVACLTFFKERSGV 597


>sp|Q5BEN5|STU1_EMENI Protein stu1 OS=Emericella nidulans GN=stu1 PE=3
            SV=2
          Length = 1261

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -1

Query: 349  QVNPSTHMLLPKQVPRWTRGQSRMGASEWEVQKDQISCL----RYTLTSSSV-*KRRI 191
            +  P+ H +L K +   T G + M   EWE+  DQ+  L    R  +T  SV  KRRI
Sbjct: 1160 EAGPTEHRMLRKGLDVITHGLTSMKEREWELPPDQLERLGEFVRQVMTLPSVALKRRI 1217


>sp|Q8WWI1|LMO7_HUMAN LIM domain only protein 7 OS=Homo sapiens
           GN=LMO7 PE=1 SV=2
          Length = 1683

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 333 RTCSSLSKSQDGPEDNPEWEPPNGR--SKKIKSVA*GTLLPPRVYEKGELVTRDVKSWTG 160
           RTC S  KS       P +        ++KI+S   GT +PP  +  G     D+K W  
Sbjct: 615 RTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQSWKLGTTVPPISFTPGPCSEADLKRWEA 674

Query: 159 IQRGRR 142
           I+   R
Sbjct: 675 IREASR 680
tr_hit_id B8LCE1
Definition tr|B8LCE1|B8LCE1_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 35
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917780|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D03.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LCE1|B8LCE1_THAPS Predicted protein OS=Thalassiosira pseudo...    35   1.6  
tr|B2WB39|B2WB39_PYRTR Multidrug transporter OS=Pyrenophora trit...    35   2.7  
tr|B4LKM8|B4LKM8_DROVI GJ22216 OS=Drosophila virilis GN=GJ22216 ...    34   4.5  
tr|Q5DG16|Q5DG16_SCHJA Putative uncharacterized protein OS=Schis...    34   4.6  
tr|Q5D8P6|Q5D8P6_SCHJA Putative uncharacterized protein OS=Schis...    34   4.6  
tr|Q1QGM1|Q1QGM1_NITHX Putative uncharacterized protein OS=Nitro...    33   7.8  
tr|Q0E3Z0|Q0E3Z0_ORYSJ Os02g0147500 protein OS=Oryza sativa subs...    33   7.8  
tr|Q4QC72|Q4QC72_LEIMA Putative uncharacterized protein OS=Leish...    33   7.8  
tr|A4HZC1|A4HZC1_LEIIN Putative uncharacterized protein OS=Leish...    33   7.8  
tr|A7ETI3|A7ETI3_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.9  

>tr|B8LCE1|B8LCE1_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_25106 PE=4 SV=1
          Length = 1069

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 109  IVTMDGHTTCLQSSKRSKTRRMQRIYEAQGATHNI 5
            ++   GH T + S K S T+ +QRI EA  ATH++
Sbjct: 948  LIATGGHVTLISSEKASATKGIQRIQEADQATHHL 982


>tr|B2WB39|B2WB39_PYRTR Multidrug transporter OS=Pyrenophora
           tritici-repentis (strain Pt-1C-BFP) GN=PTRG_07502 PE=4
           SV=1
          Length = 543

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 229 TLGN*FDLFGPPIRRLPF-WIVLWSILGLA*GGAC 330
           TLG   D+F P  ++LP  W+ LWS LG   GG C
Sbjct: 177 TLGMVADMFDPEDQQLPILWVSLWSCLGSVIGGIC 211


>tr|B4LKM8|B4LKM8_DROVI GJ22216 OS=Drosophila virilis GN=GJ22216 PE=4
            SV=1
          Length = 1044

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = -3

Query: 449  SVKLDEISQPNQ*HHLPWTP*LATSLHPPMSKMTGESQHAHAPP*ASPKMDQRTIQNGSL 270
            S+++ E SQ N  H L      + S HPP  +  G  QH  AP   S  M   T Q+ S 
Sbjct: 908  SIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHGTPQHHGAPQHHSTPMHHSTPQHHSS 967

Query: 269  RMGGP 255
            + G P
Sbjct: 968  QQGPP 972


>tr|Q5DG16|Q5DG16_SCHJA Putative uncharacterized protein
           OS=Schistosoma japonicum PE=2 SV=1
          Length = 457

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 348 R*IPARTCSSLSKSQDGPEDNPEWEPPNGRSKK 250
           R  PAR+CS LS++  G  D   W  PNG S K
Sbjct: 261 RSFPARSCSYLSRTHPGFPDGEYWIDPNGGSNK 293


>tr|Q5D8P6|Q5D8P6_SCHJA Putative uncharacterized protein
           OS=Schistosoma japonicum PE=2 SV=1
          Length = 216

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 348 R*IPARTCSSLSKSQDGPEDNPEWEPPNGRSKK 250
           R  PAR+CS LS++  G  D   W  PNG S K
Sbjct: 20  RSFPARSCSYLSRTHPGFPDGEYWIDPNGGSNK 52


>tr|Q1QGM1|Q1QGM1_NITHX Putative uncharacterized protein
           OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
           GN=Nham_3946 PE=4 SV=1
          Length = 129

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 305 WDLLREEHVRAGIHLSF-LTLADAGWLLIMVSMAGDAIGW 421
           WDL+ +E  +   H    LTL + GW+ ++    G  +GW
Sbjct: 66  WDLISKERYKVQFHDQIRLTLTERGWVPVIAGKDGSLVGW 105


>tr|Q0E3Z0|Q0E3Z0_ORYSJ Os02g0147500 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0147500 PE=4 SV=1
          Length = 561

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -2

Query: 375 PASANVKNDR*IPA---RTCSSLSKSQDGPEDNPEWEPPNGRSKKIKSVA*GTLLPPRVY 205
           PA++ +  +R  P    + CS+ S S DG E  P W PP        + A GT  P   +
Sbjct: 417 PAASGLGAERRTPTCRLQLCSACSCSADGLEQPPAWLPPGPLQAAAPAAARGTPSPVG-H 475

Query: 204 EKGELVTRDVKSWTGIQRGRR 142
             G    R V +W  I  G R
Sbjct: 476 GLGGQGARRVGNWGKIANGLR 496


>tr|Q4QC72|Q4QC72_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF21.1240 PE=4 SV=1
          Length = 1262

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 25/90 (27%), Positives = 40/90 (44%)
 Frame = -1

Query: 490  RVVMYHYNASMDHHL*SLTKSLNPTNSITCHGHHD*QPACIRQCQK*QVNPSTHMLLPKQ 311
            R+  Y + A M  H  + T +  P ++     +   +   + Q Q+ +V PS     P  
Sbjct: 748  RMQTYRFPALMRLHTDAFTAAKTPPDTAAATINDLQRQLAMAQEQR-RVEPSPEPQQPSS 806

Query: 310  VPRWTRGQSRMGASEWEVQKDQISCLRYTL 221
                   + R+ ASEW+  KDQ + LR TL
Sbjct: 807  NDNGCHSEGRISASEWQRLKDQNNTLRGTL 836


>tr|A4HZC1|A4HZC1_LEIIN Putative uncharacterized protein OS=Leishmania
            infantum GN=LinJ21.0910 PE=4 SV=1
          Length = 1262

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 25/90 (27%), Positives = 40/90 (44%)
 Frame = -1

Query: 490  RVVMYHYNASMDHHL*SLTKSLNPTNSITCHGHHD*QPACIRQCQK*QVNPSTHMLLPKQ 311
            R+  Y + A M  H  + T +  P ++     +   +   + Q Q+ +V PS     P  
Sbjct: 748  RMQTYRFPALMRLHTDAFTAAKTPADTAVATINDLQRQLAMAQEQR-RVQPSPEPQQPSS 806

Query: 310  VPRWTRGQSRMGASEWEVQKDQISCLRYTL 221
                   + R+ ASEW+  KDQ + LR TL
Sbjct: 807  NDNSCHSEGRISASEWQRLKDQNNTLRDTL 836


>tr|A7ETI3|A7ETI3_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_08639 PE=4 SV=1
          Length = 1042

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = -3

Query: 452 PSVKLDEISQPNQ*HHLPWTP*LATSLHPPMSKMTGESQHAHAPP*ASPKMDQRTIQNGS 273
           P++  D+  +P Q HH         S+ PP S  T    H   PP  +     RT QN +
Sbjct: 578 PNIPNDQ--KPQQDHHTNIGERAIKSIKPPKSSKTTHHNHKIKPPPINTTSSSRTTQNPA 635

Query: 272 LRMGGPKRSNQLPKVHSYL 216
             +    + N++ K  + L
Sbjct: 636 TNLRSDIKINRISKTSASL 654