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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917782
Clone id YMU001_000105_D05
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTGATGGACAATTTAAAAAAAACCCTTCACAGTAGAGTCTTGCTTCTCCAATTTCG
AACATAGCATGAAGGTGTTACCTTCTCAGCTCATTACTACAGAGGCACTCAACACTAGTT
TTTCATATGGATGTCAGCACAGAATATGAACAAGAAAAATTGAAGGCAAGAGCAAGGCCA
CTGCACAAAGGCCGATCTCCTGATGGAATTACCAGAGAAGCCAAACTAAGAAAGAAAGAG
GTAACCTTGAAGGGGAATCACATCTGTCCTTTAACAAATCAGAAAGAAATACCCCTTTCC
TCTTTCTTTAAAAGTGGATGTAGTATCTTCTTGTCTTGCATACTAGTCTTGCTTAACTTG
TATCCTCTATTCTGCTCCTTGTCTAGCCTTAACCCTCAGCTCGGCTGTATTACAGGCGGA
CTCTGCACCTCCAGATGCAGCTTTTCGCGCACATACTGTGTTATCTTTCGGATCTTTTCA
TCATCAACAGGATTATTCAGCATCATCAAAGAGTTATTGA
■■Homology search results ■■ -
sp_hit_id Q8ND30
Definition sp|Q8ND30|LIPB2_HUMAN Liprin-beta-2 OS=Homo sapiens
Align length 69
Score (bit) 33.9
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917782|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D05.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ND30|LIPB2_HUMAN Liprin-beta-2 OS=Homo sapiens GN=PPFIBP2 P...    34   0.45 
sp|O35711|LIPB2_MOUSE Liprin-beta-2 OS=Mus musculus GN=Ppfibp2 P...    33   0.76 
sp|Q6CNH1|OS9_KLULA Protein OS-9 homolog OS=Kluyveromyces lactis...    32   1.3  
sp|Q25157|OPSC1_HEMSA Compound eye opsin BCRH1 OS=Hemigrapsus sa...    32   1.7  
sp|Q9H3W5|LRRN3_HUMAN Leucine-rich repeat neuronal protein 3 OS=...    32   2.2  
sp|Q4JBY3|QUEC_SULAC Archaeosine biosynthesis protein queC OS=Su...    31   3.8  
sp|Q5R482|LRRN3_PONAB Leucine-rich repeat neuronal protein 3 OS=...    30   4.9  
sp|Q32ZI3|DEFB5_RAT Beta-defensin 5 OS=Rattus norvegicus GN=Defb...    30   8.4  
sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dc...    30   8.4  
sp|Q4WU12|PBN1_ASPFU Protein pbn1 OS=Aspergillus fumigatus GN=pb...    30   8.6  
sp|A1CU77|ATG9_ASPCL Autophagy-related protein 9 OS=Aspergillus ...    30   8.6  

>sp|Q8ND30|LIPB2_HUMAN Liprin-beta-2 OS=Homo sapiens GN=PPFIBP2 PE=2
           SV=2
          Length = 876

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 771 TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFD 830

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 831 ESTDYICPM 839


>sp|O35711|LIPB2_MOUSE Liprin-beta-2 OS=Mus musculus GN=Ppfibp2 PE=1
           SV=3
          Length = 882

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK    A P +   +     R  KL        RKK+  
Sbjct: 777 TLLRRHLTTKFNALIGPEAEQEKRDKMASPAYTPLTTTAKVRPRKLGFSHFGNMRKKKFD 836

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 837 ESTDYICPM 845


>sp|Q6CNH1|OS9_KLULA Protein OS-9 homolog OS=Kluyveromyces lactis
           GN=YOS9 PE=3 SV=1
          Length = 457

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
 Frame = +3

Query: 66  YLLSSLLQRHSTLVFHMDVSTE---YEQEKLKARARPLHKGRSPDGITREAKLRKKEVTL 236
           YLL +    +ST+ +H   S     Y  E L             DG T +   + +EV +
Sbjct: 138 YLLGNSSNYNSTIDYHFAKSKTGRVYLSETLV------------DGCTCDLTHKPREVEI 185

Query: 237 KGNHICPLTNQKEIPLSSFFKSGCSIFLSCILVLLNLYPLFCSLSSLNPQLG 392
           +  +ICP     + PLS  F        SC   L    P  C LSS NP LG
Sbjct: 186 Q--YICP-----KRPLSRPFHLEVREIQSCKYQLRLFLPQLCELSSFNPLLG 230


>sp|Q25157|OPSC1_HEMSA Compound eye opsin BCRH1 OS=Hemigrapsus
           sanguineus PE=2 SV=1
          Length = 377

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 309 SIFLSCILVLLNLYPLFCSLSSLNPQLGCITGGLCTSRCSFSRTYCVIFRIFSSSTGLFS 488
           ++ LS +++L   +P FC          C +GG    R  FS TYC I+    + TG+ S
Sbjct: 95  NLALSDLIMLTTNFPPFC--------YNCFSGG----RWMFSGTYCEIYAALGAITGVCS 142

Query: 489 I 491
           I
Sbjct: 143 I 143


>sp|Q9H3W5|LRRN3_HUMAN Leucine-rich repeat neuronal protein 3
           OS=Homo sapiens GN=LRRN3 PE=2 SV=1
          Length = 708

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 210 KLRKK--EVTLKGNHICPLTNQKEIPLSSFFKSGCSIFLSCILVLLNLYPLFCSLSSLNP 383
           K RKK   VT KG H     +QKE     + K+  +  ++C+  LL +  + C +S L+P
Sbjct: 601 KNRKKCVNVTTKGLH----PDQKE-----YEKNNTTTLMACLGGLLGIIGVICLISCLSP 651

Query: 384 QLGCITG 404
           ++ C  G
Sbjct: 652 EMNCDGG 658


>sp|Q4JBY3|QUEC_SULAC Archaeosine biosynthesis protein queC
           OS=Sulfolobus acidocaldarius GN=queC PE=3 SV=1
          Length = 462

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -3

Query: 505 NNSLMMLNNPVDDEKIRKITQYVREKLHLEVQSPP----VIQPS*GLRLDKEQNRGYKLS 338
           N+ +++ NN     +    T+YVR K   ++Q       V+  +  +  D E  + YK+S
Sbjct: 71  NSKVVIANN-----RAEPTTEYVRRKTENDIQPFEGERFVVTHNGIIANDMELEKKYKVS 125

Query: 337 KTSMQDKKILHPLLKKEERG 278
           K S  D  +L P+L +   G
Sbjct: 126 KLSRIDSSVLPPVLDRSWNG 145


>sp|Q5R482|LRRN3_PONAB Leucine-rich repeat neuronal protein 3
           OS=Pongo abelii GN=LRRN3 PE=2 SV=1
          Length = 708

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +3

Query: 210 KLRKKEVTLKGNHICPLTNQKEIPLSSFFKSGCSIFLSCILVLLNLYPLFCSLSSLNPQL 389
           K RKK V +    + P  +QKE     + KS  +  ++C+  LL +  + C +S L+P++
Sbjct: 601 KNRKKCVNVTTKGLDP--DQKE-----YEKSNTTTLMACLGGLLGIIGVICLISCLSPEM 653

Query: 390 GCITG 404
            C  G
Sbjct: 654 NCDGG 658


>sp|Q32ZI3|DEFB5_RAT Beta-defensin 5 OS=Rattus norvegicus GN=Defb5
           PE=3 SV=1
          Length = 63

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 312 IFLSCILVLLNLYPLFCSLSSLNPQLGCIT-GGLCTSRC 425
           +  S +LVLL+  PL     S+N  + C+T GG+C  RC
Sbjct: 6   LLFSFLLVLLS--PLSVFTQSINNPVSCVTHGGICWGRC 42


>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1
           PE=2 SV=1
          Length = 1232

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +3

Query: 204 EAKLRKKEVTLKGNHICPLTNQKEIPLSSFFKSGCSIFLSCILVLLNLYPLFCSLSSLNP 383
           E +LRK EVT    H+  LT+       SF + G      CILVLL +  L C    ++ 
Sbjct: 528 EMELRKMEVTQANRHVSLLTS---FMPDSFLRHGGD--HDCILVLLLIPRLICKAELISK 582

Query: 384 Q 386
           Q
Sbjct: 583 Q 583


>sp|Q4WU12|PBN1_ASPFU Protein pbn1 OS=Aspergillus fumigatus GN=pbn1
           PE=3 SV=2
          Length = 489

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 364 PCLALTLSSAVLQADSAPPDAAFRAHTVLSFGSFHHQQDYSASS 495
           P L +++  A L+   APPDA    HT L+  S+     Y  S+
Sbjct: 248 PTLTISMPRASLRRPPAPPDATCALHTYLTLPSWIFGDKYQLST 291
tr_hit_id B1H195
Definition tr|B1H195|B1H195_XENTR LOC100145324 protein OS=Xenopus tropicalis
Align length 59
Score (bit) 37.0
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917782|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D05.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1H195|B1H195_XENTR LOC100145324 protein OS=Xenopus tropicali...    37   0.54 
tr|Q5REI2|Q5REI2_PONAB Putative uncharacterized protein DKFZp469...    36   0.92 
tr|B7Z2C0|B7Z2C0_HUMAN cDNA FLJ59621, highly similar to Liprin-b...    35   2.7  
tr|Q4S9I0|Q4S9I0_TETNG Ubiquitin carboxyl-terminal hydrolase OS=...    34   3.5  
tr|Q9DHU7|Q9DHU7_YLDV 15L protein OS=Yaba-like disease virus GN=...    34   4.6  
tr|Q68DV6|Q68DV6_HUMAN Putative uncharacterized protein DKFZp781...    34   4.6  
tr|B7Z433|B7Z433_HUMAN cDNA FLJ57521, highly similar to Liprin-b...    34   4.6  
tr|B3KM46|B3KM46_HUMAN cDNA FLJ10269 fis, clone HEMBB1001068, hi...    34   4.6  
tr|A2QTP2|A2QTP2_ASPNC Catalytic activity: Acetyl-CoA + L-homose...    33   6.1  
tr|B5YMQ2|B5YMQ2_THAPS Transporter belonging to the MFS superfam...    33   7.8  

>tr|B1H195|B1H195_XENTR LOC100145324 protein OS=Xenopus tropicalis
           GN=LOC100145324 PE=2 SV=1
          Length = 646

 Score = 37.0 bits (84), Expect = 0.54
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 243 NHICPLTNQKEIPLS-SFFKSGCSIFLSCILVLLNLYPLFCSLSSLNPQLGCITGGLCT 416
           N +  L +++ +P+    +    S+F+  I V L+ YP+F  LS+ N  +G ITG L T
Sbjct: 80  NQVLSLFSEEYLPIGVPTWAKALSLFIGAIEVGLSFYPIFACLSTANKLIGSITGFLYT 138


>tr|Q5REI2|Q5REI2_PONAB Putative uncharacterized protein
           DKFZp469L0128 OS=Pongo abelii GN=DKFZp469L0128 PE=2 SV=1
          Length = 732

 Score = 36.2 bits (82), Expect = 0.92
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 627 TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFD 686

Query: 234 LKGNHICPLTNQKEIPLSSFFKSG 305
              ++ICP+     +  S  F SG
Sbjct: 687 ESTDYICPMEPSDGVSDSHRFYSG 710


>tr|B7Z2C0|B7Z2C0_HUMAN cDNA FLJ59621, highly similar to
           Liprin-beta-2 OS=Homo sapiens PE=2 SV=1
          Length = 520

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 415 TLLRRHLTTKFNALIGPEAEQEKREKTASPAYTALTTTAKVRPRKLGFSHFGNIRKKKFD 474

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 475 ESTDYICPM 483


>tr|Q4S9I0|Q4S9I0_TETNG Ubiquitin carboxyl-terminal hydrolase
           OS=Tetraodon nigroviridis GN=GSTENG00021876001 PE=3 SV=1
          Length = 1219

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 306 CSIFLSCILVLLNLYPLFCSLSSLNPQLGCITGGLCTSRCSFSR 437
           CS FLS +L LL L+   C+  SL+ +L C++   C + CSF R
Sbjct: 778 CSTFLSFLLALLLLHSFSCAFLSLSHRL-CLSHS-CRANCSFQR 819


>tr|Q9DHU7|Q9DHU7_YLDV 15L protein OS=Yaba-like disease virus GN=15L
           PE=3 SV=1
          Length = 77

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 291 FFKSGCSIF-LSCILVLLNLYPLFCSLSSLNPQLGCITGGLC------TSRCSFSRTYCV 449
           FF   C+I  L+C+ +L N+Y + C  S+      C+ GG C       S  +FS  +C+
Sbjct: 7   FFTLSCAILALNCLPLLQNMYVIECDTSNF-----CLNGGTCFLTKHVPSYSNFSLKFCL 61

Query: 450 IFRIFS 467
             R F+
Sbjct: 62  CKRQFN 67


>tr|Q68DV6|Q68DV6_HUMAN Putative uncharacterized protein
           DKFZp781K06126 OS=Homo sapiens GN=DKFZp781K06126 PE=2
           SV=1
          Length = 718

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 613 TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFD 672

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 673 ESTDYICPM 681


>tr|B7Z433|B7Z433_HUMAN cDNA FLJ57521, highly similar to
           Liprin-beta-2 OS=Homo sapiens PE=2 SV=1
          Length = 764

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 659 TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFD 718

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 719 ESTDYICPM 727


>tr|B3KM46|B3KM46_HUMAN cDNA FLJ10269 fis, clone HEMBB1001068,
           highly similar to Liprin-beta-2 OS=Homo sapiens PE=2
           SV=1
          Length = 217

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 78  SLLQRHSTLVFHMDVSTEYEQEKLKARARPLHKGRSPDGITREAKL--------RKKEVT 233
           +LL+RH T  F+  +  E EQEK +  A P +   +     R  KL        RKK+  
Sbjct: 112 TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFD 171

Query: 234 LKGNHICPL 260
              ++ICP+
Sbjct: 172 ESTDYICPM 180


>tr|A2QTP2|A2QTP2_ASPNC Catalytic activity: Acetyl-CoA + L-homoserine
            <=> CoA + O-acetyl-L-homoserine. OS=Aspergillus niger
            (strain CBS 513.88 / FGSC A1513) GN=An09g02800 PE=4 SV=1
          Length = 1779

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +1

Query: 322  LAY*SCLTCILYSAPCLALTLSSAVLQADS-----APPDAAFRAH-TVLSFGSFH 468
            LA+ +  T  +YS PC+++ +S    + +S     APP  A R   T+L FG+ H
Sbjct: 1504 LAFAAGTTAFIYSKPCISINVSQGNAEPESKGKNLAPPQPAGRTTVTILGFGNVH 1558


>tr|B5YMQ2|B5YMQ2_THAPS Transporter belonging to the MFS superfamily
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPS_269231
           PE=4 SV=1
          Length = 582

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 232 VTSFFLSLASLVIPSGDRPLCSGLALAFNFSCSYSVLTSI*KTSVECL 89
           +T   LS+ S  + + D+ + SG A+A   +C YS+   I   +++CL
Sbjct: 430 ITLLMLSMFSKAVNNSDKDVPSGSAIALGLACCYSICLCIGWLALDCL 477