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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917783
Clone id YMU001_000105_D07
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTGTACGACGCCTAGAACCAACTACAAATATATGCAATCATAAAGAGTCACCAACGGCC
ATAGTTTTTCCATACGTCAACCACACGTCGGACGCACACGGATATGGAAGTACGGAATAA
GTACGGATTAAACTACCCAAAAATTCAACACGTTAGATAGCCTACTACATAAGATGCTTA
AAAGCCAACATAGTACACCACTATGTTTAAAAATTTATACACAAACACAAATCCATAGAA
GCTTTAGAAATTAGAATTTAGAGACTAGCTTGTTGCTCAATCTGCACACGGTACACCAAT
CAACCAATGACCATCAATCAATCAGGCATGTAGACACAGAACAAAAAGTGGAGAGATGAA
ACCTCCAAGTAATGAAGTAACCTCCAAACAAGAAGGAGTCAGGACTGTAGAAGCAAGCCA
AAATACATTCAAGAGTGTAGTCTCCTGAATCCAAACATAAGTAGAGACTACAGGCTAGAA
TCTAAATTGTAGAGTCAACACCATAAGTAGAAGTCCAACACCATA
■■Homology search results ■■ -
sp_hit_id A4IKL9
Definition sp|A4IKL9|Y491_GEOTN UPF0295 protein GTNG_0491 OS=Geobacillus thermodenitrificans (strain NG80-2)
Align length 63
Score (bit) 30.4
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917783|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D07.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IKL9|Y491_GEOTN UPF0295 protein GTNG_0491 OS=Geobacillus th...    30   5.4  
sp|Q5L2R6|Y479_GEOKA UPF0295 protein GK0479 OS=Geobacillus kaust...    30   9.2  

>sp|A4IKL9|Y491_GEOTN UPF0295 protein GTNG_0491 OS=Geobacillus
           thermodenitrificans (strain NG80-2) GN=GTNG_0491 PE=3
           SV=1
          Length = 117

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
 Frame = -1

Query: 519 VGLLLMVLTLQFRF*PVVSTYVWIQETTLLNV-----FWL------ASTVLTPSCLEVTS 373
           VG+++M L L FR  P++ T   +     L       FW+      A  V+ PSC +VT 
Sbjct: 22  VGVIVMYLGLFFRTSPIIMTLFMVLGLLFLVASGIVYFWIGTLSTRAVQVVCPSCGKVTK 81

Query: 372 LLG 364
           +LG
Sbjct: 82  MLG 84


>sp|Q5L2R6|Y479_GEOKA UPF0295 protein GK0479 OS=Geobacillus
           kaustophilus GN=GK0479 PE=3 SV=1
          Length = 117

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
 Frame = -1

Query: 519 VGLLLMVLTLQFRF*PVVSTYVWIQETTLLNV-----FWL------ASTVLTPSCLEVTS 373
           +G+++M L L FR  PV+ T   +     L       FW+      A  V+ PSC +VT 
Sbjct: 22  IGVIVMYLGLFFRTSPVIMTLFMLFGMLFLVASGIVYFWIGTLSTRAVQVVCPSCGKVTK 81

Query: 372 LLG 364
           +LG
Sbjct: 82  MLG 84
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917783|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_D07.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******