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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917790
Clone id YMU001_000105_E04
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTGAGAAATAAACAAAAGAATAATTAGAAGTTGGAAAAGATCTCCAGGGTCTTTGA
AGTTTCGCTTGCTACAGAGTTCCTTGACATCTTAAGGAATAAATTGCACCGCATTTTTTT
GGTGCTTTAGAACACACAATTGGGTGGTTCCAATGACTGTTGCTCTGCTGTGTAGCCGCT
GCTGATTTGAGCCTTTGGAAAAGTTGCAATATGAAGAAATGCTTCTGGCTACTATCTCGA
GGTATACAGTTTCTCTACTTCAAACAAGAAACTTATTCTTACTTCTGACATGCCTGTTGA
CGATCTCATGTTTCCAAAGACAGCACCAGAAGGAAAAAAACTTGTAAAACTTGTGGCTCA
AAATTCGTCATGAATATACTCCTCATAGTCCTCATAAGCGTATGCTGTGCTATAGAAAAT
GTAAGGATTCTCCAGCATCTCTTCAATAGTTAAATGGCCATCTTTGTTTTTATCAGCCTG
TGATATTAAGTA
■■Homology search results ■■ -
sp_hit_id Q15293
Definition sp|Q15293|RCN1_HUMAN Reticulocalbin-1 OS=Homo sapiens
Align length 44
Score (bit) 32.3
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917790|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E04.
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15293|RCN1_HUMAN Reticulocalbin-1 OS=Homo sapiens GN=RCN1 PE...    32   1.0  
sp|Q62703|RCN2_RAT Reticulocalbin-2 OS=Rattus norvegicus GN=Rcn2...    31   2.3  
sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 OS=Mus musculus GN=Rcn2 PE...    31   2.3  
sp|Q5E689|TOLB_VIBF1 Protein tolB OS=Vibrio fischeri (strain ATC...    31   2.9  
sp|Q05186|RCN1_MOUSE Reticulocalbin-1 OS=Mus musculus GN=Rcn1 PE...    31   3.0  

>sp|Q15293|RCN1_HUMAN Reticulocalbin-1 OS=Homo sapiens GN=RCN1 PE=1
           SV=1
          Length = 331

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFY-STAYAYEDYEEYIHDE 334
           +L+ ++DKNKD  LT EE+LEN  +F  S A  Y +     HDE
Sbjct: 287 HLVYESDKNKDEKLTKEEILENWNMFVGSQATNYGEDLTKNHDE 330


>sp|Q62703|RCN2_RAT Reticulocalbin-2 OS=Rattus norvegicus GN=Rcn2
           PE=1 SV=2
          Length = 320

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           +LI + D N D  L+ EE+LEN  +F ++     DY   +HD+
Sbjct: 273 HLIDEMDLNSDKKLSEEEILENQDLFLTSEAT--DYGRQLHDD 313


>sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 OS=Mus musculus GN=Rcn2 PE=2
           SV=1
          Length = 320

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           +LI + D N D  L+ EE+LEN  +F ++     DY   +HD+
Sbjct: 273 HLIDEMDLNSDKKLSEEEILENQDLFLTSEAT--DYGRQLHDD 313


>sp|Q5E689|TOLB_VIBF1 Protein tolB OS=Vibrio fischeri (strain ATCC
           700601 / ES114) GN=tolB PE=3 SV=1
          Length = 450

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 200 YYLEVYSFSTSNKKLILTSDMPVDDLMFPKTAPEGKKLVKLVAQN 334
           Y L +  +   N++L+L S  P+   M P  +P+GKKL  +  +N
Sbjct: 200 YQLRIADYDGYNERLVLKSKQPI---MSPAWSPDGKKLAYVSFEN 241


>sp|Q05186|RCN1_MOUSE Reticulocalbin-1 OS=Mus musculus GN=Rcn1 PE=1
           SV=1
          Length = 325

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFY-STAYAYEDYEEYIHDE 334
           +L+ ++DKNKD  LT EE+L+N  +F  S A  Y +     HDE
Sbjct: 281 HLVYESDKNKDEMLTKEEILDNWNMFVGSQATNYGEDLTKNHDE 324
tr_hit_id A9TVB2
Definition tr|A9TVB2|A9TVB2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 60.1
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917790|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E04.
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TVB2|A9TVB2_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9TU09|A9TU09_PHYPA Predicted protein OS=Physcomitrella paten...    57   3e-07
tr|Q6YVG9|Q6YVG9_ORYSJ Os02g0221800 protein OS=Oryza sativa subs...    57   6e-07
tr|B8AE92|B8AE92_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A3A4N5|A3A4N5_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|B4FVI6|B4FVI6_MAIZE Putative uncharacterized protein OS=Zea m...    55   1e-06
tr|Q656S9|Q656S9_ORYSJ Calcium binding protein-like OS=Oryza sat...    55   2e-06
tr|Q0JLT1|Q0JLT1_ORYSJ Os01g0572700 protein OS=Oryza sativa subs...    55   2e-06
tr|B4FUN2|B4FUN2_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|A2ZUL3|A2ZUL3_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A2WRN0|A2WRN0_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A7QNL9|A7QNL9_VITVI Chromosome undetermined scaffold_133, who...    54   5e-06
tr|A5AGW1|A5AGW1_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|Q9FNN0|Q9FNN0_ARATH Arabidopsis thaliana genomic DNA, chromos...    49   1e-04
tr|Q7XPX4|Q7XPX4_ORYSJ OSJNBa0032F06.6 protein OS=Oryza sativa s...    39   0.17 
tr|Q259C3|Q259C3_ORYSA H0901F07.13 protein (H0124B04.1 protein) ...    39   0.17 
tr|Q0J8Y3|Q0J8Y3_ORYSJ Os04g0681500 protein OS=Oryza sativa subs...    39   0.17 
tr|B8ARI4|B8ARI4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A3AYQ4|A3AYQ4_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|Q9STP7|Q9STP7_ARATH Putative calcium binding protein OS=Arabi...    38   0.28 
tr|A7S361|A7S361_NEMVE Predicted protein OS=Nematostella vectens...    37   0.48 
tr|B8A2N2|B8A2N2_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|B4FZK9|B4FZK9_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|B4FD49|B4FD49_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|Q5BKL9|Q5BKL9_XENTR MGC107861 protein OS=Xenopus tropicalis G...    35   1.8  
tr|B6N4I8|B6N4I8_BRAFL Putative uncharacterized protein OS=Branc...    35   2.4  
tr|B6LDX1|B6LDX1_BRAFL Putative uncharacterized protein OS=Branc...    35   2.4  
tr|B3RNP2|B3RNP2_TRIAD Putative uncharacterized protein OS=Trich...    33   7.0  
tr|Q57US6|Q57US6_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|Q1V5X6|Q1V5X6_VIBAL Translocation protein TolB OS=Vibrio algi...    33   9.2  

>tr|A9TVB2|A9TVB2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151326 PE=4 SV=1
          Length = 390

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 24/43 (55%), Positives = 35/43 (81%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           YL+ +AD+N+DG LT++EML +PYIFYSTAY  ++++   HDE
Sbjct: 346 YLLQEADENRDGRLTLDEMLNHPYIFYSTAYDEDEFDYSTHDE 388


>tr|A9TU09|A9TU09_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_61095 PE=4 SV=1
          Length = 403

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 23/43 (53%), Positives = 35/43 (81%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           YL+ +AD+N+D  L+++EML +PYIFYSTAY  ++++  IHDE
Sbjct: 359 YLLHEADENRDERLSLDEMLNHPYIFYSTAYDEDEFDPAIHDE 401


>tr|Q6YVG9|Q6YVG9_ORYSJ Os02g0221800 protein OS=Oryza sativa subsp.
           japonica GN=P0758B01.5 PE=4 SV=1
          Length = 392

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           Y+I+QAD NKDG L+++EM+ENPY+FYS  +  +DY    HDE
Sbjct: 350 YVITQADTNKDGQLSLQEMIENPYVFYSALFTEDDYG--FHDE 390


>tr|B8AE92|B8AE92_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06410 PE=4 SV=1
          Length = 383

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           Y+I+QAD NKDG L+++EM+ENPY+FYS  +  +DY    HDE
Sbjct: 341 YVITQADTNKDGQLSLQEMIENPYVFYSALFTEDDYG--FHDE 381


>tr|A3A4N5|A3A4N5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005757 PE=4 SV=1
          Length = 542

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           Y+I+QAD NKDG L+++EM+ENPY+FYS  +  +DY    HDE
Sbjct: 500 YVITQADTNKDGQLSLQEMIENPYVFYSALFTEDDYG--FHDE 540


>tr|B4FVI6|B4FVI6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 377

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           Y+ISQAD NKDG L++ EM+ENPY+FY+  +  +DY    HDE
Sbjct: 335 YVISQADTNKDGQLSMNEMIENPYVFYNALFTEDDYG--FHDE 375


>tr|Q656S9|Q656S9_ORYSJ Calcium binding protein-like OS=Oryza sativa
           subsp. japonica GN=B1151A10.9 PE=4 SV=1
          Length = 207

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           + IS+ADK+ DG LT++EM+ENPY FY + +  +D E+Y HDE
Sbjct: 164 HAISEADKDHDGRLTLDEMIENPYAFYGSVFLSDD-EDYFHDE 205


>tr|Q0JLT1|Q0JLT1_ORYSJ Os01g0572700 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0572700 PE=4 SV=1
          Length = 244

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           + IS+ADK+ DG LT++EM+ENPY FY + +  +D E+Y HDE
Sbjct: 201 HAISEADKDHDGRLTLDEMIENPYAFYGSVFLSDD-EDYFHDE 242


>tr|B4FUN2|B4FUN2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 223

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAY---AYEDYEEYIHDE 334
           + IS+ADK+ DG LT+EEM+ENPY FY + Y   +  D E+Y HDE
Sbjct: 176 HAISEADKDHDGRLTLEEMVENPYAFYGSVYLSSSDNDDEDYFHDE 221


>tr|A2ZUL3|A2ZUL3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002235 PE=4 SV=1
          Length = 396

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = -1

Query: 462 YLISQADKNKDGHLTIEEMLENPYIFYSTAYAYEDYEEYIHDE 334
           + IS+ADK+ DG LT++EM+ENPY FY + +  +D E+Y HDE
Sbjct: 353 HAISEADKDHDGRLTLDEMIENPYAFYGSVFLSDD-EDYFHDE 394