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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917793
Clone id YMU001_000105_E07
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGAGCAGCCATGTTCAACTGGGCACTTCGCCTTTATACCCAATAC
CCACAATTTCTCACAAATGTTTAGGAAAGCCATACAATCACTATCACACATTTCAAAGAC
AAGCAAAGGAATATTTAAGTCACCCTAGTGATGGTTGGGGAAGCACTGCAGTAAGAGCGA
AAAAAATAACGAAGATACAACATAGCTTATAGGCGAAGAACACAGCCCTTAGAAGTTATG
ACCCGAAAAAATTTGACATGGCACAAGTGATGGCATCAAGAGAGAACGCTTCCCTTGCAC
CTACACACCCAACACATAATAACTTCAAGAACCACTATGCAAACGAGTACAGGAGTCCAA
AGCCCTCCTTCCTATCTTATGATACCTGAAGAGGGAGAGTCCACATTTATATGCCAATGT
TGCAAGGAGTATACATGATACACTCTCGACTCGAATGCCTCTTAACAACCAATGACTAGT
CCTTTCTCATGCAGTCATGACCCATCCCAATACCAACACCTGAACCCAAGTATCGCACAC
A
■■Homology search results ■■ -
sp_hit_id Q54C27
Definition sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Dictyostelium discoideum
Align length 56
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917793|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E07.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein ...    35   0.17 
sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygen...    31   4.1  
sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxyg...    31   4.1  
sp|Q9Y5G5|PCDG8_HUMAN Protocadherin gamma-A8 OS=Homo sapiens GN=...    30   7.0  
sp|Q05100|U1141_GAHVG Uncharacterized protein US1141 (Fragment) ...    30   9.1  
sp|Q5WG56|ODO1_BACSK 2-oxoglutarate dehydrogenase E1 component O...    30   9.1  

>sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase subunit 1 OS=Dictyostelium
           discoideum GN=ost1 PE=2 SV=1
          Length = 460

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 QVMASRENASLAPTHPTHNNFKNHYANEYRSPKPSFLSYDT*RGRVHIYMPMLQGV 415
           Q +A+R N  + P  P    +KN +   Y  P   FLS DT  G+ H+ +    G+
Sbjct: 297 QYLANRINFKIQPRFPLMGGWKNTFYTGYNLPIEKFLSVDTLTGQYHLNVTFGVGI 352


>sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase
           2 OS=Rattus norvegicus GN=Plod2 PE=2 SV=1
          Length = 737

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 19  GHFAFIPNTHNFSQMFRKAIQSLSHISKTSKGIFKSP**WLGKHCSK 159
           G F +I N H F ++   A  + SH++     IF++P  W  K+ ++
Sbjct: 501 GVFMYISNRHEFGRLISTANYNTSHLNNDLWQIFENPVDWKEKYINR 547


>sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate
           5-dioxygenase 2 OS=Mus musculus GN=Plod2 PE=2 SV=1
          Length = 737

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 19  GHFAFIPNTHNFSQMFRKAIQSLSHISKTSKGIFKSP**WLGKHCSK 159
           G F +I N H F ++   A  + SH++     IF++P  W  K+ ++
Sbjct: 501 GVFMYISNRHEFGRLISTANYNTSHLNNDFWQIFENPVDWKEKYINR 547


>sp|Q9Y5G5|PCDG8_HUMAN Protocadherin gamma-A8 OS=Homo sapiens
           GN=PCDHGA8 PE=2 SV=1
          Length = 932

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -2

Query: 440 IRVESVSCILLATLAYKCGLSLFRYHKIGRRALDSCTRLHSGS*SYYV 297
           + V ++SC+ LA +A   GL L R+HK  R   DS  RL     S++V
Sbjct: 695 VAVAAISCVFLAFVAVLLGLRLRRWHK-SRLLQDSGGRLVGVPASHFV 741


>sp|Q05100|U1141_GAHVG Uncharacterized protein US1141 (Fragment)
           OS=Gallid herpesvirus 2 (strain GA) GN=US1141 PE=4 SV=1
          Length = 380

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 239 DMAQVMASRENASLAPT-HPTHNNFKNHYANEYRSPKPSFLSYD 367
           DM+ +   ++N+ + PT HP  N       NEY+ P P F + D
Sbjct: 31  DMSAMGLKKDNSPIIPTLHPKGNENLRATLNEYKIPSPLFDTLD 74


>sp|Q5WG56|ODO1_BACSK 2-oxoglutarate dehydrogenase E1 component
           OS=Bacillus clausii (strain KSM-K16) GN=odhA PE=3 SV=1
          Length = 943

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 2   SSHVQLGTSPLYPIPTISHKCLGKPYNHYHTFQRQAKEYLSHPSDGWGST 151
           + HV +G +    +  ++H  LGKPY    +   QA   L+ PS+G G T
Sbjct: 238 TDHVMIGMAHRGRLNVLAHT-LGKPYKAIFSEFLQAPNKLNAPSEGLGET 286
tr_hit_id B8L5X6
Definition tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomonas sp. SKA14
Align length 90
Score (bit) 38.5
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917793|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E07.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomon...    39   0.21 
tr|Q5KJP1|Q5KJP1_CRYNE Expressed protein (Putative uncharacteriz...    35   2.3  
tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM1400...    34   3.9  
tr|A7Q0V0|A7Q0V0_VITVI Chromosome chr7 scaffold_42, whole genome...    33   6.6  
tr|B5YCI3|B5YCI3_DICT6 DNA repair photolyase OS=Dictyoglomus the...    33   8.6  
tr|B3MD72|B3MD72_DROAN GF11430 OS=Drosophila ananassae GN=GF1143...    33   8.6  

>tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomonas
           sp. SKA14 GN=SSKA14_435 PE=4 SV=1
          Length = 198

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 104 QAKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALRSYDPKKFDMAQVMASRENASLA 283
           Q +  L H   GW + AVRA +   +Q +L    T L       F +A + + R N    
Sbjct: 51  QGRLLLEHNRSGWMTPAVRANRKQSVQEALRQLATEL-GLQVSPFTLAALYSYRFNED-- 107

Query: 284 PTHPTHN--NFKNHYANEYRSPKPSFLSYD 367
           P  PTH+  +F+ HY    RS +P   + D
Sbjct: 108 PPDPTHDAVSFRQHYRATLRSGQPPATTAD 137


>tr|Q5KJP1|Q5KJP1_CRYNE Expressed protein (Putative uncharacterized
           protein) OS=Cryptococcus neoformans GN=CNBC1340 PE=4
           SV=1
          Length = 552

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 269 NASLAPTHPTHNNFKNHYANEYRSPKPSFLSYDT*RGRVHIYMP 400
           N SLAPTHPT +  +   ++ YR P P+ L+  +    VH Y P
Sbjct: 22  NPSLAPTHPTTSAEEESESHPYRKPGPAILNIQS--QSVHSYAP 63


>tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM14002
           PE=4 SV=1
          Length = 749

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
 Frame = +2

Query: 38  PIPTISHKCLGKPYNHYHTFQRQAKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALR 217
           P+P+  H+ L  P + Y  ++++       P+ G+        K      S+   N  + 
Sbjct: 207 PVPSYPHQDLPAP-DSYSIYEQKI------PNVGYHQNFAEPPKYPPKHGSINNPNFEI- 258

Query: 218 SYDPKKFDMAQVMASRENASLAPTHP--THNNFKNHYANEYRSPKP 349
           +Y P  F+++    S  + S  P+HP  +H+ F    +N Y  P P
Sbjct: 259 AYSPPAFEISTSYQSNHHQSYVPSHPPSSHDGFAEPPSNNYVKPPP 304


>tr|A7Q0V0|A7Q0V0_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028188001
           PE=4 SV=1
          Length = 651

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +2

Query: 68  GKPYNHYHTFQRQAKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTA-LRSYDPKKFDM 244
           G   N Y +F  QA+    H     GS++  +  I++I HS  A N A  RS+DP   D 
Sbjct: 371 GSAPNSYASFA-QARPTTVHGFASSGSSS-NSGSISRISHSASAPNLADSRSFDPSMSDF 428

Query: 245 AQVMASRENASLAPTHPTHNNFKNHYANE 331
             V A+++      T P  N    H AN+
Sbjct: 429 PPVSATQKQKLPTITQPVLNAEAVHTANK 457


>tr|B5YCI3|B5YCI3_DICT6 DNA repair photolyase OS=Dictyoglomus
           thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
           GN=DICTH_0358 PE=4 SV=1
          Length = 336

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 22/86 (25%), Positives = 35/86 (40%)
 Frame = +2

Query: 65  LGKPYNHYHTFQRQAKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALRSYDPKKFDM 244
           L KP++H +      KE +SH             K+  I H     +   +SY  ++   
Sbjct: 9   LSKPFSHIYV----EKEVISHHITQEILKKFTHSKVIPINHYKEVFSRPRQSYKLQELSK 64

Query: 245 AQVMASRENASLAPTHPTHNNFKNHY 322
             ++A R +  L+P  P   NF  HY
Sbjct: 65  KLILAKRRDTFLSPASPLCQNFGYHY 90


>tr|B3MD72|B3MD72_DROAN GF11430 OS=Drosophila ananassae GN=GF11430
           PE=4 SV=1
          Length = 2568

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 176 KIQHSL*AKNTALRSYDPKKFDMAQVMASRENASLAPTHPTHNNFKNHYANEYRSPKPS 352
           K+Q +   KNTAL +  P +       A+  N    P H  HN+  N+Y  + +   PS
Sbjct: 439 KLQAAAGNKNTALLT--PNQIQHLSASATHSNQQFHPLHHHHNHHNNNYPQQQQQQPPS 495