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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917794
Clone id YMU001_000105_E08
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACGAAGGACGGCTTCCTTGCTGTGATATTGGCCTTGGCTGGTTTTTGTTTATCATTGGA
TGGTTCTTAGCAAGTGTGCCATGGTATGTTGGCGTAATACTTCTTGTGTGTACAAAACAT
GATCACAGAGAGCGCATTGGACTGGTCTGTTGCACGATAGCGGCTATCTTGTCACTCATT
GCTATCATAGTCGGTAGCTCAGAAGCAAATTCATGAGGATCGAGTTGAGCACATCGAAGG
GGATGGCAACAGTGGTGGTTTGTTGATTGAGACTATTCTGTAAAGAAGATTAGTATGTTC
TTAACATAAGGACCAGGTCCAAAATACACTATATTGTAGGCTAGTTGCTAAGAAAGCTGC
TTAACACTGTTGTATTATTCGATGCTTGTTGTTGGTTGGCTCTAGAGTGCAAGACTGGAC
TACTTTAGTGGGTGTATGCATCTGATTTTTGTCTGTTGTAATTGTATAGAGC
■■Homology search results ■■ -
sp_hit_id Q8L9S1
Definition sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana
Align length 51
Score (bit) 70.1
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917794|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E08.
         (472 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsi...    70   5e-12
sp|P06790|VE2_HPV18 Regulatory protein E2 OS=Human papillomaviru...    32   1.8  
sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ...    32   1.9  
sp|Q8R4D5|TRPM8_MOUSE Transient receptor potential cation channe...    31   2.4  
sp|Q6PGL7|FAM21_MOUSE Protein FAM21 OS=Mus musculus GN=Fam21 PE=...    31   2.4  
sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila ...    30   4.2  
sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Hom...    30   5.3  
sp|Q7Z2W7|TRPM8_HUMAN Transient receptor potential cation channe...    30   6.9  
sp|O31520|YESQ_BACSU Probable ABC transporter permease protein y...    30   7.1  
sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel ...    29   9.1  

>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis
           thaliana GN=RPL18AA PE=2 SV=2
          Length = 158

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E  LPCC +G+GWFLFI+G+    +PWY+G  +++ T  DHRE+ G V C+
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 137


>sp|P06790|VE2_HPV18 Regulatory protein E2 OS=Human papillomavirus
           type 18 GN=E2 PE=1 SV=2
          Length = 365

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 72  KCAMVCWRNTSCVYKT*SQRAHWTGLLHDSGYLVTHCYHSR*LRSKFM 215
           KC     R  S  Y+  S   HWTG  ++   ++T  YHS   R+KF+
Sbjct: 300 KCLRYRLRKHSDHYRDISSTWHWTGAGNEKTGILTVTYHSETQRTKFL 347


>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila
            melanogaster GN=salm PE=1 SV=3
          Length = 1365

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 148  RPVQCALCDHVLYTQEVLRQHTMAHLLRTIQ 56
            RP +C++CD    T+  L+QH + H +R ++
Sbjct: 1315 RPFKCSICDRGFTTKGNLKQHMLTHKIRDME 1345


>sp|Q8R4D5|TRPM8_MOUSE Transient receptor potential cation channel
            subfamily M member 8 OS=Mus musculus GN=Trpm8 PE=2 SV=1
          Length = 1104

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 30   WPWLVFVYHWMVLSKCAMVCWR------NTSCVYKT*SQRAHWTGLLHDSGYLV 173
            +P++VF Y +MV+ KC   C +      N  C     ++   W G++ ++ YLV
Sbjct: 1013 FPFVVFAYFYMVVKKCFKCCCKEKNMESNACCFRNEDNETLAWEGVMKEN-YLV 1065


>sp|Q6PGL7|FAM21_MOUSE Protein FAM21 OS=Mus musculus GN=Fam21 PE=1
           SV=1
          Length = 1334

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 107 TRSITPTYHGTLAKNHPMINKNQPRPISQQGSR 9
           T+ + P   GTL K+HP+  KNQ    S QGS+
Sbjct: 889 TQPVVPEKKGTLKKDHPVSLKNQDPLDSTQGSK 921


>sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila
            virilis GN=salm PE=2 SV=1
          Length = 1402

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 148  RPVQCALCDHVLYTQEVLRQHTMAHLLRTIQ 56
            RP +C +CD    T+  L+QH + H +R ++
Sbjct: 1362 RPFKCNICDRGFTTKGNLKQHMLTHKIRDME 1392


>sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Homo
            sapiens GN=TTC37 PE=1 SV=1
          Length = 1564

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 30   WPWLVFVYHWMVLSKCAMVCWRNTSCVYKT*SQRAHWTGLL 152
            W WL  VY    + + A +C+R +    +  SQR  W+G L
Sbjct: 1403 WQWLAHVYQSQGMMRAAEMCYRKS---LQLASQRGSWSGKL 1440


>sp|Q7Z2W7|TRPM8_HUMAN Transient receptor potential cation channel
            subfamily M member 8 OS=Homo sapiens GN=TRPM8 PE=2 SV=2
          Length = 1104

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 30   WPWLVFVYHWMVLSKCAMVCWR------NTSCVYKT*SQRAHWTGLLHDSGYLV 173
            +P++VF Y +MV+ KC   C +      +  C     ++   W G++ ++ YLV
Sbjct: 1013 FPFIVFAYFYMVVKKCFKCCCKEKNMESSVCCFKNEDNETLAWEGVMKEN-YLV 1065


>sp|O31520|YESQ_BACSU Probable ABC transporter permease protein yesQ
           OS=Bacillus subtilis GN=yesQ PE=3 SV=1
          Length = 296

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 381 RIIQQC*AAFLATSLQYSVFWTWSLC*EHTNLLYRIVSINKPPLLP 244
           RII    A  LATS  +S +W W        L+  ++ +NKP L P
Sbjct: 205 RIILPLIAPALATSAIFSFYWKWE------ELIQPLLYLNKPELYP 244


>sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel
            subfamily M member 8 OS=Rattus norvegicus GN=Trpm8 PE=2
            SV=4
          Length = 1104

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 30   WPWLVFVYHWMVLSKCAMVCWR------NTSCVYKT*SQRAHWTGLLHDSGYLV 173
            +P++VF Y +MV+ KC   C +      +  C     ++   W G++ ++ YLV
Sbjct: 1013 FPFVVFAYFYMVVKKCFKCCCKEKNTESSACCFRNEDNETLAWEGVMKEN-YLV 1065
tr_hit_id B8LRJ9
Definition tr|B8LRJ9|B8LRJ9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 84.7
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917794|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E08.
         (472 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LRJ9|B8LRJ9_PICSI Putative uncharacterized protein OS=Picea...    85   2e-15
tr|A9NSW1|A9NSW1_PICSI Putative uncharacterized protein OS=Picea...    85   2e-15
tr|A7QSI4|A7QSI4_VITVI Chromosome undetermined scaffold_160, who...    84   3e-15
tr|A5AGA5|A5AGA5_VITVI Putative uncharacterized protein OS=Vitis...    84   3e-15
tr|Q9LPH1|Q9LPH1_ARATH T3F20.13 protein (At1g53560) (Putative un...    80   5e-14
tr|Q8LDP2|Q8LDP2_ARATH Putative uncharacterized protein OS=Arabi...    80   5e-14
tr|A5AX92|A5AX92_VITVI Putative uncharacterized protein (Chromos...    80   5e-14
tr|B6T286|B6T286_MAIZE 60S ribosomal protein L18A OS=Zea mays PE...    79   1e-13
tr|Q6AUF6|Q6AUF6_ORYSJ Os05g0564800 protein OS=Oryza sativa subs...    78   2e-13
tr|A3B6V3|A3B6V3_ORYSJ Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|A2Y7H8|A2Y7H8_ORYSI Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|Q5NA71|Q5NA71_ORYSJ cDNA clone:J023102N05, full insert sequen...    78   3e-13
tr|B6TQT0|B6TQT0_MAIZE 60S ribosomal protein L18A OS=Zea mays PE...    78   3e-13
tr|A2ZR69|A2ZR69_ORYSJ Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|A2WMQ2|A2WMQ2_ORYSI Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|Q5QLQ3|Q5QLQ3_ORYSJ 60S ribosomal protein L18A-like (Putative...    77   6e-13
tr|A9PFR6|A9PFR6_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A9RY36|A9RY36_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|B4FV10|B4FV10_MAIZE Putative uncharacterized protein OS=Zea m...    74   3e-12
tr|Q9SHG7|Q9SHG7_ARATH F20D23.22 protein (At1g17080/F6I1.24) (F6...    72   2e-11
tr|A7Y7F4|A7Y7F4_LUPAL Putative uncharacterized protein OS=Lupin...    72   2e-11
tr|A9TX22|A9TX22_PHYPA Predicted protein OS=Physcomitrella paten...    70   4e-11
tr|Q0WNX5|Q0WNX5_ARATH 60S ribosomal protein L18A like (At1g2997...    70   5e-11
tr|A8MRF3|A8MRF3_ARATH Uncharacterized protein At1g29970.2 OS=Ar...    70   5e-11
tr|Q0DCA7|Q0DCA7_ORYSJ Os06g0359400 protein OS=Oryza sativa subs...    69   2e-10
tr|A2WTK3|A2WTK3_ORYSI Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|A9RMP3|A9RMP3_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   8e-07
tr|Q570F9|Q570F9_ARATH Putative uncharacterized protein At3g1459...    54   5e-06
tr|Q1H563|Q1H563_ARATH At3g14595 OS=Arabidopsis thaliana PE=2 SV=1     54   5e-06
tr|Q8LCF3|Q8LCF3_ARATH Putative uncharacterized protein OS=Arabi...    53   7e-06

>tr|B8LRJ9|B8LRJ9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 151

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E RLPCC IGLGW LFIIG+FLAS+PWYVG  LL+C + D+RE+ GL+ CT
Sbjct: 80  ERRLPCCGIGLGWALFIIGFFLASIPWYVGAFLLLCVRQDYREKPGLLACT 130


>tr|A9NSW1|A9NSW1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E RLPCC IGLGW LFIIG+FLAS+PWYVG  LL+C + D+RE+ GL+ CT
Sbjct: 82  ERRLPCCGIGLGWALFIIGFFLASIPWYVGAFLLLCVRQDYREKPGLLACT 132


>tr|A7QSI4|A7QSI4_VITVI Chromosome undetermined scaffold_160, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005868001 PE=4 SV=1
          Length = 143

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E RLPCC IGLGWFLFIIG+FLA+VPWYVG  LL+C + D+RE+ G + CT
Sbjct: 73  ERRLPCCGIGLGWFLFIIGFFLAAVPWYVGFFLLLCARVDYREKPGYIACT 123


>tr|A5AGA5|A5AGA5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044171 PE=4 SV=1
          Length = 141

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E RLPCC IGLGWFLFIIG+FLA+VPWYVG  LL+C + D+RE+ G + CT
Sbjct: 73  ERRLPCCGIGLGWFLFIIGFFLAAVPWYVGFFLLLCARVDYREKPGYIACT 123


>tr|Q9LPH1|Q9LPH1_ARATH T3F20.13 protein (At1g53560) (Putative
           uncharacterized protein At1g53560) (Putative
           uncharacterized protein F22G10.10) OS=Arabidopsis
           thaliana GN=F22G10.10 PE=2 SV=1
          Length = 153

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           + RLPCC +GLGWFLFIIG+ L ++PWYVGV +LVC + D RE+ G V CT
Sbjct: 81  QNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACT 131


>tr|Q8LDP2|Q8LDP2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 153

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           + RLPCC +GLGWFLFIIG+ L ++PWYVGV +LVC + D RE+ G V CT
Sbjct: 81  QNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACT 131


>tr|A5AX92|A5AX92_VITVI Putative uncharacterized protein (Chromosome
           undetermined scaffold_143, whole genome shotgun
           sequence) OS=Vitis vinifera GN=GSVIVT00003443001 PE=4
           SV=1
          Length = 145

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 30/51 (58%), Positives = 41/51 (80%)
 Frame = +1

Query: 4   EGRLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTKHDHRERIGLVCCT 156
           E RLPCC IG+GW LFIIG+F A++PWY+G  +L+C + D+RE+ GL+ CT
Sbjct: 74  ERRLPCCGIGIGWLLFIIGFFCAAIPWYIGAFILLCVRVDYREKPGLIACT 124


>tr|B6T286|B6T286_MAIZE 60S ribosomal protein L18A OS=Zea mays PE=2
           SV=1
          Length = 168

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  RLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTK-HDHRERIGLVCCT 156
           RLPCC +GLGW LFI G+FLA++PWY+G  +L+C + HDHRE+ G V CT
Sbjct: 98  RLPCCGLGLGWCLFIAGFFLAAIPWYIGAFVLICVRVHDHREKPGYVACT 147


>tr|Q6AUF6|Q6AUF6_ORYSJ Os05g0564800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0053D02.15 PE=4 SV=1
          Length = 73

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  RLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTK-HDHRERIGLVCCT 156
           RLPCC +GLGW LFI G+FLA++PWYVG  +L+C + HD+RE+ G V CT
Sbjct: 3   RLPCCGLGLGWLLFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVACT 52


>tr|A3B6V3|A3B6V3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018775 PE=4 SV=1
          Length = 192

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  RLPCCDIGLGWFLFIIGWFLASVPWYVGVILLVCTK-HDHRERIGLVCCT 156
           RLPCC +GLGW LFI G+FLA++PWYVG  +L+C + HD+RE+ G V CT
Sbjct: 122 RLPCCGLGLGWLLFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVACT 171