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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917795
Clone id YMU001_000105_E09
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTGTTTTTTTGGGAGAGTAACTTCAAACTAAACTTAAAGAATTAATAAAGCTATAATTA
GATTCAGGGACTTCCTGCCTGGTACCTTGAAATTTGGTAATAGCCATGCTTCCAAACATG
GAATAGCTTTTGTCTACGCATGCATCCTTGAGATTTTCCTCGGTTGCAAAAAGGGGTTTT
TAAGCAATGCTACTGTCAACTTGTTTTGAAAGCGGACCTAGGTAGAGGATGATCGTGCCT
AGGAGCCAACGGAGATCATTGAAAATGCTGTGATTGTGTAGTGGAGATACACATATCTTT
GTATCGAATACTTGGAGGTAGCAGCAACAAGCACGACGGCAACCACATTACGTACATGTA
CCAATACCTACAGGCTACCGAGCCTCATATTGAACAATCCGTCGAGTTCGTTTTTTGTAA
AGAATACGGTATCCACATTCTCGACACTGTATCACATCCCCGGGTTTTAATG
■■Homology search results ■■ -
sp_hit_id Q63871
Definition sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus
Align length 31
Score (bit) 49.7
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917795|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E09.
         (472 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II...    50   6e-06
sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II...    50   6e-06
sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II...    50   6e-06
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II...    48   2e-05
sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II...    44   4e-04
sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and II...    44   5e-04
sp|Q6HDK0|GPR_BACHK Germination protease OS=Bacillus thuringiens...    31   2.4  
sp|Q634M0|GPR_BACCZ Germination protease OS=Bacillus cereus (str...    31   3.2  
sp|Q81LR5|GPR_BACAN Germination protease OS=Bacillus anthracis G...    31   3.2  
sp|Q730L4|GPR_BACC1 Germination protease OS=Bacillus cereus (str...    29   9.3  

>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2
          Length = 58

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 28  IKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1
          Length = 58

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 28  IKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1
          Length = 58

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 28  IKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10
           PE=2 SV=2
          Length = 63

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 18/27 (66%), Positives = 26/27 (96%)
 Frame = -3

Query: 458 DVIQCRECGYRILYKKRTRRIVQYEAR 378
           +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 37  EVIRCRECGHRVMYKMRTKRMVQFEAR 63


>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III
           subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k
           PE=3 SV=1
          Length = 46

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 27/31 (87%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 16  IKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46


>sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Saccharomyces cerevisiae GN=RPC10 PE=1
           SV=1
          Length = 70

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = -3

Query: 458 DVIQCRECGYRILYKKRTRRIVQYEAR 378
           D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 44  DAVRCKDCGHRILLKARTKRLVQFEAR 70


>sp|Q6HDK0|GPR_BACHK Germination protease OS=Bacillus thuringiensis
           subsp. konkukian GN=gpr PE=3 SV=1
          Length = 367

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 278 VVEIHISLYRILGGSSNKHDGNHITYMYQYLQATEPHIEQSVEFVFCKEY 427
           V+   +++  +   S  K  GN++T   Q ++  +  ++Q VE +F KE+
Sbjct: 47  VIITKVTIDEVASESMGKKPGNYLTLEVQGIRQQDTELQQKVERIFAKEF 96


>sp|Q634M0|GPR_BACCZ Germination protease OS=Bacillus cereus (strain
           ZK / E33L) GN=gpr PE=3 SV=1
          Length = 368

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 278 VVEIHISLYRILGGSSNKHDGNHITYMYQYLQATEPHIEQSVEFVFCKEY 427
           ++   +++  +   S  K  GN++T   Q ++  +  ++Q VE +F KE+
Sbjct: 48  IIITKVTIDEVASESMGKKPGNYLTLEVQGIRQQDTELQQKVERIFAKEF 97


>sp|Q81LR5|GPR_BACAN Germination protease OS=Bacillus anthracis
           GN=gpr PE=3 SV=1
          Length = 368

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 278 VVEIHISLYRILGGSSNKHDGNHITYMYQYLQATEPHIEQSVEFVFCKEY 427
           ++   +++  +   S  K  GN++T   Q ++  +  ++Q VE +F KE+
Sbjct: 48  IIITKVTIDEVASESMGKKPGNYLTLEVQGIRQQDTELQQKVERIFAKEF 97


>sp|Q730L4|GPR_BACC1 Germination protease OS=Bacillus cereus (strain
           ATCC 10987) GN=gpr PE=3 SV=1
          Length = 367

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 320 SSNKHDGNHITYMYQYLQATEPHIEQSVEFVFCKEY 427
           S  K  GN++T   Q ++  +  ++Q VE +F KE+
Sbjct: 61  SMGKKPGNYLTLEVQGIRQQDTELQQKVERIFAKEF 96
tr_hit_id B8A9M5
Definition tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 31
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917795|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E09.
         (472 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-10
tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I...    69   2e-10
tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea...    69   2e-10
tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea...    69   2e-10
tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten...    67   4e-10
tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran...    65   2e-09
tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I...    64   3e-09
tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=...    63   6e-09
tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,...    60   7e-08
tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a...    60   7e-08
tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who...    59   2e-07
tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I...    56   8e-07
tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|Q9U3I0|Q9U3I0_CAEEL Protein F23B2.13, partially confirmed by ...    52   1e-05
tr|A8Y0I0|A8Y0I0_CAEBR CBR-RPB-12 protein OS=Caenorhabditis brig...    52   1e-05
tr|B8N130|B8N130_ASPFL Metallothionein-I gene transcription acti...    52   1e-05
tr|A2Q9B0|A2Q9B0_ASPNC Catalytic activity: nucleoside triphospha...    52   1e-05
tr|Q6IGE3|Q6IGE3_DROME CG34186 OS=Drosophila melanogaster GN=CG3...    52   2e-05
tr|Q16J42|Q16J42_AEDAE RNA polymerase small Zn-binding subunit, ...    52   2e-05
tr|B5E1D3|B5E1D3_DROPS GA24334 OS=Drosophila pseudoobscura pseud...    52   2e-05
tr|B4QGD6|B4QGD6_DROSI GD25636 OS=Drosophila simulans GN=GD25636...    52   2e-05
tr|B4P7T5|B4P7T5_DROYA GE12262 OS=Drosophila yakuba GN=GE12262 P...    52   2e-05
tr|B4LLL8|B4LLL8_DROVI GJ20617 OS=Drosophila virilis GN=GJ20617 ...    52   2e-05
tr|B4KP23|B4KP23_DROMO GI20882 OS=Drosophila mojavensis GN=GI208...    52   2e-05
tr|B4J5Z9|B4J5Z9_DROGR GH20797 OS=Drosophila grimshawi GN=GH2079...    52   2e-05
tr|B4HRT6|B4HRT6_DROSE GM20158 OS=Drosophila sechellia GN=GM2015...    52   2e-05
tr|B4GH27|B4GH27_DROPE GL17021 OS=Drosophila persimilis GN=GL170...    52   2e-05
tr|B3NQN7|B3NQN7_DROER GG22374 OS=Drosophila erecta GN=GG22374 P...    52   2e-05
tr|B3MGL1|B3MGL1_DROAN GF12628 OS=Drosophila ananassae GN=GF1262...    52   2e-05
tr|B0W764|B0W764_CULQU RNA polymerase small Zn-binding subunit O...    52   2e-05

>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02267 PE=4 SV=1
          Length = 52

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 22  LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and III
           7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 22  LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 53

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 23  LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 53

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 23  LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1
          Length = 56

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQCRECGYRILYKKRTRRIVQ+EAR
Sbjct: 26  LKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56


>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene
           transcription activator (DNA directed RNA polymerase II
           polypeptide K) (Putative uncharacterized protein
           At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2
           SV=1
          Length = 51

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 21  LKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and III
           7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 22  LKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52


>tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase
           OS=Chlamydomonas reinhardtii GN=RPB12 PE=4 SV=1
          Length = 58

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 26/31 (83%), Positives = 30/31 (96%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           LKPGD+IQCRECGYRILYKKRT ++VQ+EAR
Sbjct: 28  LKPGDIIQCRECGYRILYKKRTNKVVQFEAR 58


>tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,
           II, and III, probable (IC) OS=Ostreococcus tauri
           GN=Rpc10 PE=4 SV=2
          Length = 56

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           L+PGDVI CRECGYRILYKKRT+++VQ+EAR
Sbjct: 26  LRPGDVIICRECGYRILYKKRTKQVVQFEAR 56


>tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, and
           III, probable OS=Ostreococcus lucimarinus (strain
           CCE9901) GN=Rpc10 PE=4 SV=1
          Length = 56

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = -3

Query: 470 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 378
           L+PGDVI CRECGYRILYKKRT+++VQ+EAR
Sbjct: 26  LRPGDVIICRECGYRILYKKRTKQVVQFEAR 56