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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917796
Clone id YMU001_000105_E10
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGATCATCTTGGTACTCACAGACACACCAGACAAGGAGATA
TATCCTTGTCTATGTACAACAGTCAGGCTAGGATCCTCAATGGAGGAGATCACCACTCTA
CTGATTGAGACAACGCCTAATGCAATAGCACAGGCATATCCACACACTCAGCTTATGACC
AAAAACAACATTCAAGGAGGCATGCCTCAAAACAATAGGTATGACAAGGAGTGAAGAGAG
ATGATAGTACAAGCTTTAGAGAGATCTTCTCCTAGGAGTCATCAATCCAACACAGTCTTG
GATAGCCTTCTGACGCCTTGTGCAACGAAAGAAGTGAGCATTCCTAGCTCAAATGGAGTG
AGGTTGATACCAACTATTCTTGAGTAGAGACTCAAGAGAGGCATGACATCTCTTCCATGG
GCACTCCCCTCCCCTAGTGATTGCTTCCTCTGACGTGTGGG
■■Homology search results ■■ -
sp_hit_id P98089
Definition sp|P98089|MUC2L_RAT Intestinal mucin-like protein (Fragment) OS=Rattus norvegicus
Align length 30
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917796|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E10.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98089|MUC2L_RAT Intestinal mucin-like protein (Fragment) OS=...    30   3.8  
sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=M...    29   8.5  

>sp|P98089|MUC2L_RAT Intestinal mucin-like protein (Fragment)
           OS=Rattus norvegicus PE=2 SV=1
          Length = 837

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 256 KLVLSSLFTPCHTYC-----FEACLLECCF 182
           +L++ SLF+ CH +      +EACL + CF
Sbjct: 352 QLIMDSLFSQCHPFVPPKHYYEACLFDSCF 381


>sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC
            PE=1 SV=3
          Length = 5030

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = -2

Query: 253  LVLSSLFTPCHTYC-----FEACLLECCFWS*AECVDMPVLLH*ALSQS----VEW*SPP 101
            L+LS +F PCHT       +E C+ + C  +  + V   + L+ AL  S    ++W    
Sbjct: 4525 LILSKVFEPCHTVIPPLLFYEGCVFDRCHMTDLDVVCSSLELYAALCASHDICIDWRGRT 4584

Query: 100  LRILA*LLYIDKDISPC 50
              +       DK   PC
Sbjct: 4585 GHMCPFTCPADKVYQPC 4601
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917796|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_E10.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******