NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917800
Clone id YMU001_000105_F03
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACATGGAATAACTCTTTCAAGAATGACATGCTGACAGGCAGCATAAATATTTGCAGGAT
TCAAGCAAAATCCGCCTGCACATGTGTAGTCCTCAGTTACATGCATCAGAAAATTGTGAA
GGCCCTTTTTATGAGAAGACAATTTTCCGAGCCTTTGCAGAAGCAAAATCCCTAAAGTCG
TCCTATGCTGTCCCCATTTTTAATGATGTGCCTTGGCAGCTGCCTTCTGCTCAGCCTTTG
CTGCGACCTTCAAATATTTCAATTTGAAGTGTGCCATACGTAAAACCTAGCAAGAGTGCT
GATACCCTGCACACCTGTGCAAAAGTACTCTTGCCCGAGTAAGGACCCGGATACGCCATG
GACGAGCTTCTGCGCAGCGTAATCAACGCAAAGCGAAACCTAAGCAAACTT
■■Homology search results ■■ -
sp_hit_id Q37373
Definition sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba castellanii
Align length 53
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917800|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_F03.
         (411 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subu...    31   2.2  
sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1     30   3.8  
sp|A5PK21|CKP2L_BOVIN Cytoskeleton-associated protein 2-like OS=...    29   6.5  
sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Aspergillus fumi...    29   8.4  
sp|O88942|NFAC1_MOUSE Nuclear factor of activated T-cells, cytop...    29   8.4  
sp|P40604|YTRP_PSEPU Uncharacterized protein in trpE-trpG interg...    29   8.5  
sp|Q09828|SYLM_SCHPO Putative leucyl-tRNA synthetase, mitochondr...    29   8.5  
sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    29   8.5  

>sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subunit
           OS=Acanthamoeba castellanii GN=NAD11 PE=3 SV=1
          Length = 675

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 46  KYLQDSSKIRLHMCSPQLHASENCEGPFYEKTIFRAFAEAKSLKSSYAVPIFN 204
           K++ +SSK  LH+       S      F  K IF     +  LK S  VP+FN
Sbjct: 414 KHISNSSKTLLHVLEGSHWLSAKISKKFSSKPIFLIGDSSSLLKGSLIVPLFN 466


>sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1
          Length = 3620

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 362 SMAYPGPYS-GKSTFAQVCRVSALLLGFTYGTLQIEIFEGRSK 237
           S  YPG Y  G+    QV     LL+ FT+GTL +E  +  SK
Sbjct: 600 SPGYPGNYPPGRDCVWQVVTSPDLLITFTFGTLSLEHHDDCSK 642


>sp|A5PK21|CKP2L_BOVIN Cytoskeleton-associated protein 2-like OS=Bos
           taurus GN=CKAP2L PE=2 SV=1
          Length = 744

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +1

Query: 34  DRQHK---YLQDSSKIRLHMCSPQLHASENCEGPFYEKTIFRAFAEAKSLKSSYAVPI-- 198
           +RQ K   YL    K++     P L A  NC  P + K+        K + +  A+P+  
Sbjct: 12  ERQRKLQEYLAAKGKLKCQNTKPYLKAKNNCPNPPHSKS---TIGPKKDVTNHVALPVKT 68

Query: 199 FNDVPWQLPSAQPLLRPSNISI*SVPYVKPSK 294
              +  +L S     RP+NI+    P ++P K
Sbjct: 69  TRSINIKLQS-----RPANITRSQRPKLEPPK 95


>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Aspergillus
           fumigatus GN=rat1 PE=3 SV=4
          Length = 1058

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 37  RQHKYLQDSSKIRLHMCSPQLHASENCEGPFYEK 138
           R+  + Q+S     H+C  Q H +E C G   EK
Sbjct: 257 REDVFFQESRARTCHLCGQQGHKAEECRGQAKEK 290


>sp|O88942|NFAC1_MOUSE Nuclear factor of activated T-cells,
           cytoplasmic 1 OS=Mus musculus GN=Nfatc1 PE=2 SV=1
          Length = 717

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 64  SKIRLHMCSPQLHASENCEGPFYEKTIFRAFAEAKSLKSSYAVPIFN--DVPWQLPSAQP 237
           S   LH+ S + +   +C  P    +     +EA S +S+Y+ P  +    PWQ P   P
Sbjct: 155 STATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSP 214


>sp|P40604|YTRP_PSEPU Uncharacterized protein in trpE-trpG
           intergenic region OS=Pseudomonas putida PE=3 SV=1
          Length = 592

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 407 LLRFRFALITLRRSSSMAYPGPYSGKSTF 321
           LLRF  A + L  S + A P PYSG   F
Sbjct: 6   LLRFTLASLALACSQAFAAPSPYSGMIVF 34


>sp|Q09828|SYLM_SCHPO Putative leucyl-tRNA synthetase, mitochondrial
           OS=Schizosaccharomyces pombe GN=SPAC4G8.09 PE=2 SV=1
          Length = 874

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 218 CQGTSLKMGTA*DDFRDFASAKARKIVFS 132
           C GT   MG    D RDF  AK   I+FS
Sbjct: 344 CYGTGAVMGAPIHDRRDFEFAKRNNIIFS 372


>sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1
          Length = 194

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
 Frame = -3

Query: 130 KKGLHNFLMHVTEDYTCAGG----------FCLNPANIYAACQHVI 23
           K GL + ++  T DY C  G           C NP N+ A C + +
Sbjct: 25  KTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAV 70
tr_hit_id A9NLR8
Definition tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 41
Score (bit) 48.9
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917800|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_F03.
         (411 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea...    49   1e-04
tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Popul...    44   0.005
tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome ...    43   0.009
tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Popul...    40   0.058
tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subs...    40   0.076
tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa GN=H02...    40   0.076
tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.076
tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Popul...    38   0.22 
tr|B6T134|B6T134_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|B6SPF6|B6SPF6_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|Q8GXE7|Q8GXE7_ARATH GPI-anchored protein (At5g15320) OS=Arabi...    36   1.1  
tr|Q9LXF0|Q9LXF0_ARATH Putative uncharacterized protein F8M21_21...    35   1.9  
tr|B6T0M6|B6T0M6_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.9  
tr|A8MQH0|A8MQH0_ARATH Uncharacterized protein At5g15320.2 OS=Ar...    35   1.9  
tr|Q9MAC4|Q9MAC4_ARATH T4P13.18 protein (At3g01130) OS=Arabidops...    35   2.5  
tr|Q8LDZ3|Q8LDZ3_ARATH Putative uncharacterized protein OS=Arabi...    35   2.5  
tr|B3EKA9|B3EKA9_CHLPB ATPase, P-type (Transporting), HAD superf...    34   3.2  

>tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 52

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = -2

Query: 359 MAYPGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFEGRSK 237
           MA PGPYSG STFA V RVSA  LG  YG++++   + ++K
Sbjct: 1   MAGPGPYSGTSTFALVARVSAFTLGVVYGSMKLSYLKAKAK 41


>tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 55

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFEGRSK 237
           PGPYSG ST A V RVSA  LG  YG+++++  + +++
Sbjct: 5   PGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAR 42


>tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035980001
           PE=4 SV=1
          Length = 53

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFEGRSK 237
           PGPYSG ST A V RVSA   G  YG+++++  + ++K
Sbjct: 5   PGPYSGTSTLALVARVSAFSAGLVYGSIKLKYLKSKAK 42


>tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SA   G  YG+++++I +
Sbjct: 5   PGPYSGASTLALVARASAFSFGLVYGSVKLKILK 38


>tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0050O03.8 PE=4 SV=2
          Length = 52

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SAL +G  YG +++ I +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSILK 38


>tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa
           GN=H0207B04.8 PE=4 SV=1
          Length = 52

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SAL +G  YG +++ I +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSILK 38


>tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14632 PE=4 SV=1
          Length = 52

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SAL +G  YG +++ I +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSILK 38


>tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SA  +G  YG++++ I +
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSILK 38


>tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG ST A V R SA  +G  YG++++ I +
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSILK 38


>tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 350 PGPYSGKSTFAQVCRVSALLLGFTYGTLQIEIFE 249
           PGPYSG S  A V R SA   G  YG+++++I +
Sbjct: 5   PGPYSGASALALVARASAFSFGLVYGSVKLKILK 38