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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917806
Clone id YMU001_000105_F09
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTGGAAGAATTCGCGGCCGCAGGAATTGGGATTATCCTGTTTGTCCAACCCATTATAAA
CATTGGAGCAATCTACACCCACACTAATCTTTAGAGCAAACGGAAAGACAAACAGACTCT
CAATGTACGGAGCCATACCATGAAAGCAACTCCATGCGAACGAGCAAGTCACCAGAGCAT
AGAACGCTTCTTTGTAAGGTTTGTCTGGATAGACTCTTTGCCACCAAGCAGCATTTTGTT
ATAGTATAAGACTGCTACATTACAGCATGTCTTTATTTATCTATACAAATATCTACATCG
GTGCTGCCAATCCCCATCAAATGCACTCACAAGATGAAATAACACAATGACACAAATGAC
AAAATGCCACAAATGATACATACAACGTCAACGTGCCCATCACTTCTAAACTTCTCTTTG
AGCTCTGACTGGGCCCTAATG
■■Homology search results ■■ -
sp_hit_id O15015
Definition sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens
Align length 65
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917806|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_F09.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens GN...    33   0.58 
sp|O14508|SOCS2_HUMAN Suppressor of cytokine signaling 2 OS=Homo...    31   2.2  
sp|Q861R0|SOCS2_BOVIN Suppressor of cytokine signaling 2 OS=Bos ...    31   2.2  
sp|Q7YRV6|SOCS2_PIG Suppressor of cytokine signaling 2 OS=Sus sc...    30   3.8  
sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus gen...    30   3.8  
sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus gen...    29   6.5  
sp|O35717|SOCS2_MOUSE Suppressor of cytokine signaling 2 OS=Mus ...    29   8.4  

>sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens
            GN=ZNF646 PE=2 SV=1
          Length = 1829

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 21   THYKHWSNLHPH*SLEQTERQTDSQCTEPYHESNSM---RTSKSPEHRTLLCKVCLDRLF 191
            +H   W N      L+     + SQC + Y +S S+    T+K+  H  LLC        
Sbjct: 1511 SHMDSWDNRDNSSQLQPGSHSSCSQCGKTYCQSGSLLNHNTNKTDRHYCLLCSKEFLNPV 1570

Query: 192  ATKQH 206
            ATK H
Sbjct: 1571 ATKSH 1575


>sp|O14508|SOCS2_HUMAN Suppressor of cytokine signaling 2 OS=Homo
           sapiens GN=SOCS2 PE=1 SV=1
          Length = 198

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 408 GPSQSSKRSLEVMGTLTLYVSFVAFCHLCHCVISSCECI*WGLAAP 271
           GP      ++ +  T  LY S  +  HLC   I+ C    WGL  P
Sbjct: 139 GPEAPRNGTVHLYLTKPLYTSAPSLQHLCRLTINKCTGAIWGLPLP 184


>sp|Q861R0|SOCS2_BOVIN Suppressor of cytokine signaling 2 OS=Bos
           taurus GN=SOCS2 PE=2 SV=1
          Length = 198

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 408 GPSQSSKRSLEVMGTLTLYVSFVAFCHLCHCVISSCECI*WGLAAP 271
           GP      ++ +  T  LY S     HLC   I+ C    WGL  P
Sbjct: 139 GPEAPRNGTVHLYLTKPLYTSAPPLQHLCRLTINKCTSTVWGLPLP 184


>sp|Q7YRV6|SOCS2_PIG Suppressor of cytokine signaling 2 OS=Sus
           scrofa GN=SOCS2 PE=2 SV=1
          Length = 198

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 408 GPSQSSKRSLEVMGTLTLYVSFVAFCHLCHCVISSCECI*WGLAAP 271
           GP      ++ +  T  LY S     HLC   I+ C    WGL  P
Sbjct: 139 GPEAPRNGTVHLYLTKPLYTSAPPLQHLCRLTINKCTGTIWGLPLP 184


>sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus
           genotype 6h (isolate VN004) PE=3 SV=3
          Length = 3015

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -1

Query: 371 WAR*RCM----YHLWHFVICVIVLFHLVSAFDGDWQHR 270
           W   RCM    Y LWH+   V    H V  F G  +HR
Sbjct: 603 WLTPRCMVDYPYRLWHYPCTVNFTIHKVRVFVGGVEHR 640


>sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus
           genotype 6a (isolate EUHK2) PE=3 SV=3
          Length = 3018

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -1

Query: 371 WAR*RCM----YHLWHFVICVIVLFHLVSAFDGDWQHR 270
           W   RC+    Y LWH+   V    H V  F G  +HR
Sbjct: 606 WVTPRCLVDYAYRLWHYPCTVNFTLHKVRMFVGGTEHR 643


>sp|O35717|SOCS2_MOUSE Suppressor of cytokine signaling 2 OS=Mus
           musculus GN=Socs2 PE=1 SV=1
          Length = 198

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -3

Query: 408 GPSQSSKRSLEVMGTLTLYVSFVAFCHLCHCVISSCECI*WGLAAP 271
           GP      ++ +  T  LY S     H C   I+ C    WGL  P
Sbjct: 139 GPEAPRNGTVHLYLTKPLYTSAPTLQHFCRLAINKCTGTIWGLPLP 184
tr_hit_id A5AV06
Definition tr|A5AV06|A5AV06_VITVI Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotgun sequence) OS=Vitis vinifera
Align length 37
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917806|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_F09.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AV06|A5AV06_VITVI Putative uncharacterized protein (Chromos...    40   0.058
tr|B6TAJ7|B6TAJ7_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.9  
tr|Q175K9|Q175K9_AEDAE Regulator of sex-limitation OS=Aedes aegy...    34   3.2  
tr|Q21G23|Q21G23_SACD2 Transglutaminase-like protein OS=Saccharo...    33   9.3  
tr|Q8IVD8|Q8IVD8_HUMAN Zinc finger protein 646 OS=Homo sapiens G...    33   9.3  

>tr|A5AV06|A5AV06_VITVI Putative uncharacterized protein (Chromosome
           chr7 scaffold_31, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00023705001 PE=4 SV=1
          Length = 365

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = -2

Query: 409 RAQSELKE-KFRSDGHVDVVCIICGILSFVSLCYFIL 302
           + Q+ELKE K R +  +D  CI+ GI++F++ CY+IL
Sbjct: 329 KVQNELKEEKMRIESRLDKFCILSGIVAFIAFCYYIL 365


>tr|B6TAJ7|B6TAJ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 359

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 412 IRAQSELKE-KFRSDGHVDVVCIICGILSFVSLC 314
           ++AQSELKE K RS+   D +C+  GI  F ++C
Sbjct: 319 LKAQSELKEEKIRSECRFDTLCVFSGIAIFAAIC 352


>tr|Q175K9|Q175K9_AEDAE Regulator of sex-limitation OS=Aedes aegypti
           GN=AAEL006608 PE=4 SV=1
          Length = 1000

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 15  CPTHYKHWSNLHPH*SLEQTERQTDSQCTEPYHESNSMRTSKSPEH--RTLLCKVCLDRL 188
           CP  ++H S LH H ++ +    T + C + +  +NS+R  K      +   C++C DR 
Sbjct: 611 CPAAFRHPSALHSHKAIHEKLVFTCTICNKTFRYANSLRVHKRLHSGVKRFRCEIC-DRE 669

Query: 189 FATK 200
           F+ K
Sbjct: 670 FSQK 673


>tr|Q21G23|Q21G23_SACD2 Transglutaminase-like protein
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=Sde_3099 PE=4 SV=1
          Length = 1116

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 12  VCPTHYKHWSNLHPH*SLEQTERQTDSQCTEPYHESNSMRTSKSPEHRTLLC 167
           V P  ++   +L PH  L Q   +   Q  EP  E N+ +T   P  RT LC
Sbjct: 548 VKPDPFEQRQSLAPHSELLQGAEKIQPQVAEPVKEPNAKQTQTVPVVRTALC 599


>tr|Q8IVD8|Q8IVD8_HUMAN Zinc finger protein 646 OS=Homo sapiens
            GN=ZNF646 PE=2 SV=1
          Length = 1832

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 21   THYKHWSNLHPH*SLEQTERQTDSQCTEPYHESNSM---RTSKSPEHRTLLCKVCLDRLF 191
            +H   W N      L+     + SQC + Y +S S+    T+K+  H  LLC        
Sbjct: 1511 SHMDSWDNRDNSSQLQPGSHSSCSQCGKTYCQSGSLLNHNTNKTDRHYCLLCSKEFLNPV 1570

Query: 192  ATKQH 206
            ATK H
Sbjct: 1571 ATKSH 1575