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NBDC - LSDB Archive
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BP917813
Clone id YMU001_000105_G06
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000105_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGAAGAAGGCAGCACTGCGTGGGCCACCACCATTTCCACCATAGCCACGGCGCCCATC
TTCCCTGCACACCATCACCGTCCGCACGTGGGCTACGAGTCTAGTGGCCCCTTCGGCGCT
CCTGCCCCGCCCAATATTGAACCACCTGCATCAGGCATGATGAAGCCTCACCATTCGGAT
GCCCACAAAAGCCCCTTCTCCGCTCCCTCCCATATAGCACCTCCACCAGCTCATGTTCCT
CATCATGGCTTGGCTCCAATCAATCCTGATCATCACGCCCCTCCTTTCCATGTTCGCCCT
CATGCATTCCACCTCCACCCTGCCCGTCATTTCCATCCTCCTCCGACTGCAGCAGCACCT
CATGCGCCTGGGCACCACGCCAAACACCTTCATTGCCATCGCCACCACCCTCCTCAGCCT
CTTTAGGGCCACCCTTTCCACACACCTCAGGCGCCATATGCAGGAGCTGCAGCTCCTGCG
TGATCAGCTG
■■Homology search results ■■ -
sp_hit_id Q86IK1
Definition sp|Q86IK1|Y8872_DICDI Uncharacterized protein DDB_G0272724 OS=Dictyostelium discoideum
Align length 33
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917813|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_G06.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86IK1|Y8872_DICDI Uncharacterized protein DDB_G0272724 OS=Di...    31   3.5  
sp|Q5U1W2|PRR13_RAT Proline-rich protein 13 OS=Rattus norvegicus...    31   3.5  
sp|Q9CQJ5|PRR13_MOUSE Proline-rich protein 13 OS=Mus musculus GN...    31   3.5  
sp|Q6A5L3|3MGH_PROAC Putative 3-methyladenine DNA glycosylase OS...    31   3.5  
sp|Q9HV66|ACSA2_PSEAE Acetyl-coenzyme A synthetase 2 OS=Pseudomo...    30   5.9  
sp|Q5PQQ2|WBP11_RAT WW domain-binding protein 11 OS=Rattus norve...    30   7.8  
sp|Q923D5|WBP11_MOUSE WW domain-binding protein 11 OS=Mus muscul...    30   7.8  
sp|Q9Y2W2|WBP11_HUMAN WW domain-binding protein 11 OS=Homo sapie...    30   7.8  
sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila mel...    30   7.8  
sp|O55103|PRAX_MOUSE Periaxin OS=Mus musculus GN=Prx PE=2 SV=1         30   7.8  
sp|P46551|CD2L7_CAEEL Putative cell division cycle 2-related pro...    30   7.8  
sp|Q2J3F7|CCMA_RHOP2 Cytochrome c biogenesis ATP-binding export ...    30   7.8  
sp|Q80VM4|ZN579_MOUSE Zinc finger protein 579 OS=Mus musculus GN...    29   9.9  
sp|Q8NAF0|ZN579_HUMAN Zinc finger protein 579 OS=Homo sapiens GN...    29   9.9  

>sp|Q86IK1|Y8872_DICDI Uncharacterized protein DDB_G0272724
           OS=Dictyostelium discoideum GN=DDB_G0272724 PE=4 SV=1
          Length = 104

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  HHHRPHVGYESSGPFGAPAPPNIEPPASGMMKP 168
           HHH   + Y ++G +GAP  P ++P    M++P
Sbjct: 13  HHHHDTITY-TTGVYGAPVVPMVQPMVQPMVQP 44


>sp|Q5U1W2|PRR13_RAT Proline-rich protein 13 OS=Rattus norvegicus
           GN=Prr13 PE=2 SV=1
          Length = 139

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = +1

Query: 91  GYESSGPFGAPAPP------NIEPPASGMMKP 168
           GY+ SGP+  P PP       + PPA GM+ P
Sbjct: 65  GYQPSGPYPPPYPPAAPGMCPVNPPAPGMVGP 96


>sp|Q9CQJ5|PRR13_MOUSE Proline-rich protein 13 OS=Mus musculus
           GN=Prr13 PE=2 SV=1
          Length = 137

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = +1

Query: 91  GYESSGPFGAPAPP------NIEPPASGMMKP 168
           GY+ SGP+  P PP       + PPA GM+ P
Sbjct: 65  GYQPSGPYPPPYPPPAPGMCPVNPPAPGMVGP 96


>sp|Q6A5L3|3MGH_PROAC Putative 3-methyladenine DNA glycosylase
           OS=Propionibacterium acnes GN=PPA2247 PE=3 SV=1
          Length = 191

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 235 HELVEVLYGRERRRGFCGHPNGEASSCLMQVVQYWAGQE---RRRGH*TRSPRADGDGVQ 65
           H  V + YG  R       P+GEAS+ L++  Q  AG +   RRRG+   +  A G G  
Sbjct: 62  HIYVYLSYGMHRCVNLVCSPDGEASAVLLRGGQVIAGHDDARRRRGNVAENRLACGPGNM 121

Query: 64  G 62
           G
Sbjct: 122 G 122


>sp|Q9HV66|ACSA2_PSEAE Acetyl-coenzyme A synthetase 2 OS=Pseudomonas
           aeruginosa GN=acsA2 PE=3 SV=1
          Length = 645

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = -2

Query: 318 VEVECMRANMERRGVMIRIDWSQAMMRNMSWWRCYMGGSGEGAFVGIRMVRLHHA*CRWF 139
           V   C+  ++ERRG  I I W                G        I   +LHH  CR  
Sbjct: 76  VAYNCIDRHLERRGEQIAIVWE---------------GDNPSESAHITYRKLHHNVCRLA 120

Query: 138 NIGRGRSAEGATRLVAHV 85
           N+ + R  E   R+  ++
Sbjct: 121 NVLKSRGVEKGDRVCIYM 138


>sp|Q5PQQ2|WBP11_RAT WW domain-binding protein 11 OS=Rattus
           norvegicus GN=Wbp11 PE=2 SV=1
          Length = 641

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 121 PAPPNIEPPASGMMKP 168
           PAPP I PP  GMM+P
Sbjct: 494 PAPPGIPPPRPGMMRP 509


>sp|Q923D5|WBP11_MOUSE WW domain-binding protein 11 OS=Mus musculus
           GN=Wbp11 PE=1 SV=2
          Length = 641

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 121 PAPPNIEPPASGMMKP 168
           PAPP I PP  GMM+P
Sbjct: 494 PAPPGIPPPRPGMMRP 509


>sp|Q9Y2W2|WBP11_HUMAN WW domain-binding protein 11 OS=Homo sapiens
           GN=WBP11 PE=1 SV=1
          Length = 641

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 121 PAPPNIEPPASGMMKP 168
           PAPP I PP  GMM+P
Sbjct: 494 PAPPGIPPPRPGMMRP 509


>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila
           melanogaster GN=Rx PE=2 SV=2
          Length = 873

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +1

Query: 70  HHHR------PHVGYESSGPFGAPAPPNIEPPASGMMKPHHS 177
           HHH       PHVG+   G  G P PP   PP  G+  PH S
Sbjct: 663 HHHAHNGPPPPHVGH---GGHGQPQPPP-PPPPHGVPHPHGS 700


>sp|O55103|PRAX_MOUSE Periaxin OS=Mus musculus GN=Prx PE=2 SV=1
          Length = 1391

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  HRPHVGYESSGPFGAPAPPNIEPPASGMMKP 168
           H P +G       GAPA P +EPPA+G+  P
Sbjct: 269 HLPTLG------LGAPAAPAVEPPATGIQVP 293
tr_hit_id B4MW30
Definition tr|B4MW30|B4MW30_DROWI GK14952 OS=Drosophila willistoni
Align length 81
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917813|Adiantum capillus-veneris mRNA, clone:
YMU001_000105_G06.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MW30|B4MW30_DROWI GK14952 OS=Drosophila willistoni GN=GK149...    37   0.38 
tr|B6MVJ9|B6MVJ9_BRAFL Putative uncharacterized protein OS=Branc...    28   0.51 
tr|Q9MMA9|Q9MMA9_EUDSC NADH dehydrogenase subunit 2 (Fragment) O...    35   1.9  
tr|A6W251|A6W251_MARMS Putative uncharacterized protein OS=Marin...    35   1.9  
tr|B3MNB3|B3MNB3_DROAN GF14728 OS=Drosophila ananassae GN=GF1472...    35   2.4  
tr|B0CB92|B0CB92_ACAM1 Peptidase, M50 family OS=Acaryochloris ma...    34   4.2  
tr|B8CGQ6|B8CGQ6_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.2  
tr|B4Q729|B4Q729_DROSI GD23086 OS=Drosophila simulans GN=GD23086...    33   5.5  
tr|B4P3G9|B4P3G9_DROYA GE17462 OS=Drosophila yakuba GN=GE17462 P...    33   5.5  
tr|Q4WXI4|Q4WXI4_ASPFU RNA binding protein, putative OS=Aspergil...    33   5.5  
tr|B1B5J7|B1B5J7_CHLRE RHYTHM OF CHLOROPLAST 75 OS=Chlamydomonas...    33   7.1  
tr|Q17JC8|Q17JC8_AEDAE Putative uncharacterized protein OS=Aedes...    33   7.1  
tr|Q16VE9|Q16VE9_AEDAE Putative uncharacterized protein OS=Aedes...    33   7.1  
tr|Q97JG8|Q97JG8_CLOAB Potassium channel subunit OS=Clostridium ...    33   9.3  
tr|Q82BK6|Q82BK6_STRAW Putative uncharacterized protein OS=Strep...    33   9.3  
tr|A1TCM3|A1TCM3_MYCVP Virulence factor Mce family protein OS=My...    33   9.3  
tr|A8J8C3|A8J8C3_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.3  
tr|Q4W9P1|Q4W9P1_ASPFU MFS transporter, putative OS=Aspergillus ...    33   9.3  
tr|B0YED3|B0YED3_ASPFC MFS transporter, putative OS=Aspergillus ...    33   9.3  

>tr|B4MW30|B4MW30_DROWI GK14952 OS=Drosophila willistoni GN=GK14952
           PE=4 SV=1
          Length = 75

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 25/81 (30%), Positives = 26/81 (32%)
 Frame = +1

Query: 70  HHHRPHVGYESSGPFGAPAPPNIEPPASGMMKPHHSDAHKXXXXXXXXXXXXXXXXXXXX 249
           HH  PH G    GP     PP+  PP  G   PHH   H                     
Sbjct: 15  HHGPPHHGPPHHGP-SHHGPPHHGPPHHG--PPHHGPPHH-------------------- 51

Query: 250 XXXINPDHHAPPFHVRPHAFH 312
                P HH PP H  PH  H
Sbjct: 52  ----GPPHHGPPHHGPPHHHH 68


>tr|B6MVJ9|B6MVJ9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_124878 PE=4 SV=1
          Length = 1203

 Score = 28.5 bits (62), Expect(2) = 0.51
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 181 HPNGEASSCLMQVVQYWAGQERRRGH*TRSPRADGDGV 68
           HPNG + S L +V  YW G +  +G   R    +G G+
Sbjct: 156 HPNGASGSVLARVRLYWTGCKYGQGVNGRKGVREGPGL 193



 Score = 27.7 bits (60), Expect(2) = 0.51
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 324 GRVEVECMRANMERRGVMIRIDWSQAMMRNMSWWRCYMGGSG 199
           GRV V  +RA + R+G+   + WS+   + +S  +   GGSG
Sbjct: 92  GRVRVGTVRAGVRRKGLGQSLPWSEERAK-VSTGQSMRGGSG 132


>tr|Q9MMA9|Q9MMA9_EUDSC NADH dehydrogenase subunit 2 (Fragment)
           OS=Eudynamys scolopacea PE=4 SV=1
          Length = 176

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +2

Query: 221 LHQLMFLIMAWLQSILIITPLLSMFALM----HSTSTLPVISILLRLQQHLMRLGTTPNT 388
           +H L    M    +++ I  LL +F  +    HST TLP  S     Q H+ +   +P T
Sbjct: 94  IHDLTKQEMTTTATLITILSLLGLFFYLRLTYHSTITLPPNSTNYMKQWHINK---SPKT 150

Query: 389 FIAIATTLLSLFRATLSTHLRRHMQ 463
             AI T+ +    A LS+H   H++
Sbjct: 151 LTAILTSTIHPSPAKLSSHSHYHLE 175


>tr|A6W251|A6W251_MARMS Putative uncharacterized protein
           OS=Marinomonas sp. (strain MWYL1) GN=Mmwyl1_3882 PE=3
           SV=1
          Length = 772

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 239 LIMAWLQSILIITPLLSMFALMHSTSTLPVISILLRLQQHLMRLGTTPNT----FIAIAT 406
           LI AWL  +L +  + +   L +  + LP   +L R ++   +L   P       IAIAT
Sbjct: 371 LIAAWLSVLLFLPLITTKNTLQNKENYLPAALLLNRCKETFPKLDQFPKVASLFIIAIAT 430

Query: 407 TLLSLF 424
           T LSLF
Sbjct: 431 TSLSLF 436


>tr|B3MNB3|B3MNB3_DROAN GF14728 OS=Drosophila ananassae GN=GF14728
           PE=4 SV=1
          Length = 71

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/76 (31%), Positives = 26/76 (34%)
 Frame = +1

Query: 70  HHHRPHVGYESSGPFGAPAPPNIEPPASGMMKPHHSDAHKXXXXXXXXXXXXXXXXXXXX 249
           HH  PH G    GP     PP+  PP  G   PHH D H                     
Sbjct: 16  HHGPPHHGPPHHGP-PHHGPPHHGPPHHG--PPHHHDHHHHGPPHHH------------- 59

Query: 250 XXXINPDHHAPPFHVR 297
               +P HH PP H R
Sbjct: 60  ----DPHHHGPPMHPR 71



 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/78 (28%), Positives = 23/78 (29%)
 Frame = +1

Query: 70  HHHRPHVGYESSGPFGAPAPPNIEPPASGMMKPHHSDAHKXXXXXXXXXXXXXXXXXXXX 249
           HHH P            P PP+  PP  G   PHH   H                     
Sbjct: 7   HHHHP------------PGPPHHGPPHHG--PPHHGPPHH-------------------- 32

Query: 250 XXXINPDHHAPPFHVRPH 303
                P HH PP H  PH
Sbjct: 33  ----GPPHHGPPHHGPPH 46


>tr|B0CB92|B0CB92_ACAM1 Peptidase, M50 family OS=Acaryochloris
           marina (strain MBIC 11017) GN=AM1_1710 PE=4 SV=1
          Length = 501

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 242 IMAWLQSILIITPLLSMFALMHSTSTLPVISILL 343
           ++AWLQS++++ P L MF L+    TL + S+LL
Sbjct: 28  VLAWLQSLVLMGPWLLMFGLLSLGITLNLASVLL 61


>tr|B8CGQ6|B8CGQ6_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_12191 PE=4 SV=1
          Length = 1205

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
 Frame = +1

Query: 70   HHHRPHVGYESSGPFGAPAPPNIEPPASGMMKP-HHSDAHKXXXXXXXXXXXXXXXXXXX 246
            HH +P +     G FGA    +  PP  GM  P HH  AH+                   
Sbjct: 911  HHGQPMMSSPCDGRFGAQHRRDGPPPPYGMYPPAHHHMAHQYEGDRVRNLRGRGP----- 965

Query: 247  XXXXINPDHHAPP-FHVRPHAFH 312
                  P HH PP  H+ P ++H
Sbjct: 966  ------PTHHMPPQHHLPPPSYH 982


>tr|B4Q729|B4Q729_DROSI GD23086 OS=Drosophila simulans GN=GD23086
           PE=4 SV=1
          Length = 70

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
 Frame = +1

Query: 70  HHHRPHVGYESSGP--FGAP--APPNIEPPASGMMKPHHSDAHKXXXXXXXXXXXXXXXX 237
           HH  PH G    GP   G P   PP+  PP  G   PHH   H                 
Sbjct: 12  HHGPPHHGPPHHGPPHHGPPHHGPPHHGPPHHG--PPHHGPPHHDHHHH----------- 58

Query: 238 XXXXXXXINPDHHAPPFHVR 297
                    P HH PP H R
Sbjct: 59  --------GPPHHGPPMHPR 70


>tr|B4P3G9|B4P3G9_DROYA GE17462 OS=Drosophila yakuba GN=GE17462 PE=4
           SV=1
          Length = 69

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
 Frame = +1

Query: 70  HHHRPHVGYESSGP--FGAP--APPNIEPPASGMMKPHHSDAHKXXXXXXXXXXXXXXXX 237
           HH  PH G    GP   G P   PP+  PP  G   PHH   H                 
Sbjct: 11  HHGPPHHGPPHHGPPHHGPPHHGPPHHGPPHHG--PPHHGPPHHDHHHH----------- 57

Query: 238 XXXXXXXINPDHHAPPFHVR 297
                    P HH PP H R
Sbjct: 58  --------GPPHHGPPMHPR 69


>tr|Q4WXI4|Q4WXI4_ASPFU RNA binding protein, putative OS=Aspergillus
           fumigatus GN=AFUA_3G09620 PE=4 SV=1
          Length = 1003

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
 Frame = +1

Query: 70  HHHRPHVGYESSGPFGAPAPPNIE---PPASGMMKPHHSDAHKXXXXXXXXXXXXXXXXX 240
           HHH PH     S P   P PP+     P       PHH   H+                 
Sbjct: 460 HHHHPH---PHSRPHPPPPPPHSHHDIPHPHPPHLPHHYHQHQPRPFPPPSPP------- 509

Query: 241 XXXXXXINPDHHAPPFHVRPHAFH 312
                  +P HH PP    PH FH
Sbjct: 510 -------HPHHHMPPPPPPPHPFH 526