BP917831 |
Clone id |
YMU001_000106_A11 |
Library |
YMU01 |
Length |
367 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000106_A11. |
Accession |
BP917831 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CGCAAAAGGTCTTGATTACATGCAAATAACTAAATTGCAATTCACAAGGAGCTACACTTT TTCATTCTCATGACTGTCAGAATATACACGGCAATAGGTGAGACATGGAAGACGCATAGT GTGTCAGAATTCAGGATTCACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCACT GGTGTTGTATACTAAGAGGGCACCACCCAACAAGATAGCGCCGAGGGTAACTGCCCAGAT AGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTGGGAC ATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGACTCC CTTTCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
67 |
Score (bit) |
94.7 |
E-value |
1.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917831|Adiantum capillus-veneris mRNA, clone: YMU001_000106_A11. (367 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 95 1e-19 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 95 1e-19 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 92 1e-18 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 92 1e-18 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 91 2e-18 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 89 5e-18 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 89 9e-18 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 32 1.3 sp|P34396|YLU2_CAEEL Uncharacterized protein F10E9.2 OS=Caenorha... 30 2.9 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.9 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 4.9 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 4.9 sp|Q58CT4|TM180_BOVIN Transmembrane protein 180 OS=Bos taurus GN... 29 6.4 sp|Q69ZF8|MSL2_MOUSE Male-specific lethal 2 homolog OS=Mus muscu... 29 8.3 sp|Q9HCI7|MSL2_HUMAN Male-specific lethal 2 homolog OS=Homo sapi... 29 8.3
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 94.7 bits (234), Expect = 1e-19 Identities = 47/67 (70%), Positives = 48/67 (71%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 GKGVYQY KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT LVY Sbjct: 72 GKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVY 131
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 132 NTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 94.7 bits (234), Expect = 1e-19 Identities = 47/67 (70%), Positives = 48/67 (71%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 GKGVYQY KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT LVY Sbjct: 72 GKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVY 131
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 132 NTSALAQ 138
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 91.7 bits (226), Expect = 1e-18 Identities = 45/67 (67%), Positives = 48/67 (71%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 GKGVYQ+ KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT LVY Sbjct: 74 GKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVY 133
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 134 NTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 91.7 bits (226), Expect = 1e-18 Identities = 44/66 (66%), Positives = 47/66 (71%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT LVY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 186 NTSALA 169 +TSALA Sbjct: 132 STSALA 137
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 90.5 bits (223), Expect = 2e-18 Identities = 44/67 (65%), Positives = 48/67 (71%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 GKGVYQ+ KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT LV+ Sbjct: 70 GKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVF 129
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 130 NTSALAQ 136
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 89.4 bits (220), Expect = 5e-18 Identities = 45/67 (67%), Positives = 46/67 (68%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 G GVY+Y KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT LVY Sbjct: 74 GYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVY 133
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 134 NTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 88.6 bits (218), Expect = 9e-18 Identities = 44/67 (65%), Positives = 47/67 (70%) Frame = -2
Query: 366 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 187 G GVY++ KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT LVY Sbjct: 75 GYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVY 134
Query: 186 NTSALAQ 166 NTSALAQ Sbjct: 135 NTSALAQ 141
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 31.6 bits (70), Expect = 1.3 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +3
Query: 42 SQGATLFHSHDCQNIHGNR*DMEDA*CVRI 131 SQG+ L+HS D I+ N+ D +DA VR+ Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|P34396|YLU2_CAEEL Uncharacterized protein F10E9.2 OS=Caenorhabditis elegans GN=F10E9.2 PE=2 SV=2 Length = 286
Score = 30.4 bits (67), Expect = 2.9 Identities = 24/79 (30%), Positives = 38/79 (48%) Frame = +1
Query: 70 MTVRIYTAIGETWKTHSVSEFRIHLINIQKQSLSKGTGVVY*EGTTQQDSAEGNCPDSQS 249 + R+YT +G + KTH ++ + QK S +G G E + + D A DS+ Sbjct: 176 LMARLYTLLGVSGKTHMIT------LRTQKSSSEEGEG----EFSGRGDPAPLEVGDSK- 224
Query: 250 SRTCSIAITRS*PFLWDID 306 +R + ITR L D+D Sbjct: 225 TRLSDLKITRHKMLLLDVD 243
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 4.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2
Query: 245 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 340 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A4ZGB4 |
Definition |
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein OS=Agave tequilana |
Align length |
67 |
Score (bit) |
95.5 |
E-value |
1.0e-18 |
Report |
|