NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917836
Clone id YMU001_000106_B04
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGATAGGAACATCCCTGTAATCCCCTCGGCTATTTGGTTCAAGGTCAGGTATCATTCTT
TGCTGCCATAATCTAGCCTCCTGCCGCATCAGTGTCAGGGCGATCATCTCATGCCCGAGG
TTTTTTACCACCTCATCTGGAGTAATCATGAGTAGGGCAGCTGATTCCAGCACTTTCAAT
TCATACTCCAGATATTCTTTGTTTGAGGGGTCTTTGACTTCTGAGATCCAGGCCTGAATT
TCTTCCTTGGCCGAATCGAAGATGGGTTATCTTTCTCTTCCTTGGTCCTAGTGGATTTGT
CAGATGATTCAAGATCATCGACGTGTGGTCTCTTTTCCTCTTCTTTCTCTCTCCATCTTT
CATTCGAGCTCGTTTTGGATCCGTTGCCGCATGGTGCTGGCAATATCTCGACTCTCCTTC
TGCTACTTGATCTGTTCCAGAGCTGTTGTCTGCCTGCATAGTAGCAGAATGTCTTCTTCT
TCTTCTTCTTTCTCATCATCAGCTTTTGCTCCTTAACTTCTTTTGTCTCCATGCTTCTGT
TGGTGGATCC
■■Homology search results ■■ -
sp_hit_id Q99107
Definition sp|Q99107|TSD2_USTMA Protein TSD2 OS=Ustilago maydis
Align length 86
Score (bit) 33.5
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917836|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B04.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99107|TSD2_USTMA Protein TSD2 OS=Ustilago maydis GN=TSD2 PE=...    33   0.70 
sp|Q9D5U8|CT152_MOUSE Uncharacterized protein C20orf152 homolog ...    31   3.5  
sp|Q9VJ87|NCM_DROME Nucampholin OS=Drosophila melanogaster GN=nc...    27   3.7  
sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    30   6.0  

>sp|Q99107|TSD2_USTMA Protein TSD2 OS=Ustilago maydis GN=TSD2 PE=2
           SV=1
          Length = 845

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
 Frame = -2

Query: 447 NSSGTDQV---------AEGESRYCQHHAATDPKRARMKDGERKKRKRDHTSMILNHLTN 295
           N SG+D             G  R    H+    +R R K G+R K +   TS     LTN
Sbjct: 223 NDSGSDSARSHDERQRDGSGGKRKRGSHSPLSRRRQRHKQGQRHKPRHRSTSASATRLTN 282

Query: 294 PLGPRKRKITHLRFGQGRNSGLDLRS 217
               R R I    + +G + G+ + S
Sbjct: 283 AERHRYRNILTRYYARGESFGMSVSS 308


>sp|Q9D5U8|CT152_MOUSE Uncharacterized protein C20orf152 homolog
           OS=Mus musculus PE=1 SV=2
          Length = 673

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 319 DDLESSDKS---TRTKEEKDNPSSIRPRKKFRPGSQKSKTPQTKNIWSMN*KCW 167
           D  ES  +S   +R++E+K++P+SI+  K   P  +     Q K  WS   K W
Sbjct: 48  DTTESKSESGSDSRSEEDKESPASIKEIKAETPQPKDRPGVQIKLSWSQKIKSW 101


>sp|Q9VJ87|NCM_DROME Nucampholin OS=Drosophila melanogaster GN=ncm
            PE=1 SV=3
          Length = 1330

 Score = 26.6 bits (57), Expect(2) = 3.7
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 468  SATMQADNSSGTDQVAEGESRYCQHHAATDPKRAR-MKDGERKKRKR 331
            S+   +++SS  D  ++  S      ++++PK+ R  KD ++KK K+
Sbjct: 949  SSDTDSEDSSEEDSSSDSSSESSSSDSSSEPKKKRKRKDKDKKKSKK 995



 Score = 23.1 bits (48), Expect(2) = 3.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 307  SSDKSTRTKEEKDNPSSIRPRKKFRPGSQKSKTPQTKN 194
            + +KS +TK +K    + + ++K +   +KSK  + K+
Sbjct: 997  TKEKSKKTKNKKKKKKAEKEQEKEKEKQRKSKKEKEKD 1034


>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 438 GTDQVAEGESRYCQHHAATDPKRARMKDGERKKRKRDHTSMILNHLTNPLGPRKRKITHL 259
           G D+ +EG +R+ +  AA   +R+R     RK+R+   + M    +T+    RKR I + 
Sbjct: 526 GRDKDSEGRARHAEAEAARTRRRSRSYSPIRKRRRDSPSFMEPRRITS---ARKRPIPYY 582

Query: 258 R 256
           R
Sbjct: 583 R 583
tr_hit_id A6RRD0
Definition tr|A6RRD0|A6RRD0_BOTFB Putative uncharacterized protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 66
Score (bit) 35.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917836|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B04.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6RRD0|A6RRD0_BOTFB Putative uncharacterized protein OS=Botry...    35   2.6  
tr|Q12J87|Q12J87_SHEDO GTPase EngC OS=Shewanella denitrificans (...    34   4.5  
tr|B4PXK6|B4PXK6_DROYA Suppressor of white-apricot OS=Drosophila...    34   4.5  
tr|A5KBF6|A5KBF6_PLAVI Putative uncharacterized protein OS=Plasm...    34   5.9  
tr|B4ADQ7|B4ADQ7_BACPU Putative uncharacterized protein OS=Bacil...    33   9.8  
tr|Q9SKR5|Q9SKR5_ARATH PEARLI 4 protein OS=Arabidopsis thaliana ...    33   10.0 
tr|Q39177|Q39177_ARATH PEARLI 4 protein OS=Arabidopsis thaliana ...    33   10.0 

>tr|A6RRD0|A6RRD0_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_03371
           PE=4 SV=1
          Length = 416

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +1

Query: 22  SPRLFGSRSGIILCCHNLASCRISVR-------AIISCPRFFTTSSGVIMSRAADSSTFN 180
           S RLF  RS +   C  + S + S+R       AI + PR FTT++    S+   S+ FN
Sbjct: 2   SKRLFKPRSDVCRICDFITSQQSSLRPQRQLSQAINTIPRTFTTTTRKRSSKPPKSTPFN 61

Query: 181 SYSRYS 198
           S  +YS
Sbjct: 62  SLRQYS 67


>tr|Q12J87|Q12J87_SHEDO GTPase EngC OS=Shewanella denitrificans
           (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_3213
           PE=4 SV=1
          Length = 353

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 366 RMKDGERKKRKRDHTSMILNHL-TNPLGPRKRKITHLRFGQ 247
           RM+D + K+ KR HT    N L  N LGP +  +   RFGQ
Sbjct: 14  RMRDNQSKRLKRSHTQDTTNELQDNLLGPEQAGVVISRFGQ 54


>tr|B4PXK6|B4PXK6_DROYA Suppressor of white-apricot OS=Drosophila
           yakuba GN=Dyak\su(w[a]) PE=4 SV=1
          Length = 500

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
 Frame = -1

Query: 307 SSDKSTRTKEEKDN-----PSSIRPRKKFRPGSQKSKTPQTK 197
           SS +S+R + +K +     PSSI PRK  +P +Q++KTP+ +
Sbjct: 393 SSRESSRRRRQKSSRRSREPSSIPPRKSQQPSTQRTKTPKKR 434


>tr|A5KBF6|A5KBF6_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_119825 PE=4 SV=1
          Length = 254

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 456 QADNSSGTDQVAEGESRYCQHHAATDPKRARMKDGERKKRKRDHTSMILNH 304
           Q D+  G+D       R+ +     D KR + K+ E+KK+K DH   ++ +
Sbjct: 189 QTDHLRGSDSSESDAHRHGKRSKRRDSKREKEKEKEKKKKKYDHIKKLIKY 239


>tr|B4ADQ7|B4ADQ7_BACPU Putative uncharacterized protein OS=Bacillus
           pumilus ATCC 7061 GN=BAT_2420 PE=4 SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -3

Query: 119 LGHEMIALTLMRQEARLWQQRMIPDLE--PNSRG 24
           LG E ++L  ++ EA +W++R+IP LE  PN +G
Sbjct: 112 LGTENLSLKKIKYEAEVWRERLIPQLESSPNLKG 145


>tr|Q9SKR5|Q9SKR5_ARATH PEARLI 4 protein OS=Arabidopsis thaliana
           GN=At2g20960/F26H11.28 PE=2 SV=1
          Length = 748

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
 Frame = -1

Query: 460 YAGRQQLWNRSSSR--RRVEILPAPCGNGSKTSSNXXXXXXXXXXRP-----HVDDLESS 302
           Y+G      R+  R     ++ P P G   KT  +           P     H +D  S 
Sbjct: 125 YSGGDYFARRADQRGDEDDDVSPRPFGTQPKTPEHPLRTPQHRPRTPQHRSAHQEDAFSL 184

Query: 301 DKSTRTKEEKDNPSSIRPRKKFRPGSQKSKTPQT 200
           +   RT E + N S  RPR      +   + PQT
Sbjct: 185 ETRPRTPERRSNTSDTRPRTPIHESAATGRRPQT 218


>tr|Q39177|Q39177_ARATH PEARLI 4 protein OS=Arabidopsis thaliana
           GN=pEARLI 4 PE=2 SV=1
          Length = 766

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
 Frame = -1

Query: 460 YAGRQQLWNRSSSR--RRVEILPAPCGNGSKTSSNXXXXXXXXXXRP-----HVDDLESS 302
           Y+G      R+  R     ++ P P G   KT  +           P     H +D  S 
Sbjct: 125 YSGGDYFARRADQRGDEDDDVSPRPFGTQPKTPEHPLRTPQHRPRTPQHRSAHQEDAFSL 184

Query: 301 DKSTRTKEEKDNPSSIRPRKKFRPGSQKSKTPQT 200
           +   RT E + N S  RPR      +   + PQT
Sbjct: 185 ETRPRTPERRSNTSDTRPRTPIHESAATGRRPQT 218