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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917837
Clone id YMU001_000106_B05
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGGATCTCATTGAGAGAGAACTGGGTGACTTAAGAAGCCGCATCCATGTGTTGGAAGGT
GGAAGTGACCACCATGACTCAGGTGAAGTGGTATCAGAAAAGAGCGTAGGCACTAGCTTC
CTCTAGTTTGCGCAACAGGTAAGCAAGTTCACTCTCCAATGATTGGTGGTACCATGGCAT
AGTTCAGCGCAAGCTATTTTAAGCTCTGAGCTTTCTTCTCTCATCTAAGAGGCTTTGAGA
TTTGTGAATGTTTCCAGGGAGATGTTCAGGCGAAGTTATGGCATTTTGTATTCAGAGAGA
GGGAGGGAGAGCCTCGATACAAACGGTTTCCTTCGGCTCAGTAGTGTACATACGTTCAGA
TATAGTTTGTAGGAGTACCTCGGTTAGTGTTGTTCAATGTGTACATTTGATGCATATACA
CAACAACAACAAAAGTCCAGCTACCGAC
■■Homology search results ■■ -
sp_hit_id P45781
Definition sp|P45781|GSPK_VIBCH General secretion pathway protein K OS=Vibrio cholerae
Align length 36
Score (bit) 30.8
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917837|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B05.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P45781|GSPK_VIBCH General secretion pathway protein K OS=Vibr...    31   2.7  
sp|Q9LV85|CPR5_ARATH Protein CPR-5 OS=Arabidopsis thaliana GN=CP...    30   6.1  

>sp|P45781|GSPK_VIBCH General secretion pathway protein K OS=Vibrio
           cholerae GN=epsK PE=3 SV=2
          Length = 336

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 182 LCHGTTNHWRVNLLTCCAN*RKLVPTLFSDTTSPES 75
           +C   T+ WR+N+ T  A    L+  +FS T SPES
Sbjct: 207 VCALPTDQWRLNVNTLPAEQAALLAAMFSPTLSPES 242


>sp|Q9LV85|CPR5_ARATH Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5
           PE=1 SV=1
          Length = 564

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -2

Query: 309 LPPSL*IQNAITSP-----EHLPGNIHKSQSLLDERRK 211
           LPPS   QN IT+P      H  G++HK ++++ +++K
Sbjct: 6   LPPSPEPQNQITNPANSKPNHQSGDVHKDETMMMKKKK 43
tr_hit_id A7QR98
Definition tr|A7QR98|A7QR98_VITVI Chromosome chr13 scaffold_149, whole genome shotgun sequence OS=Vitis vinifera
Align length 52
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917837|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B05.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QR98|A7QR98_VITVI Chromosome chr13 scaffold_149, whole geno...    38   0.22 
tr|A5C177|A5C177_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|Q2GQW6|Q2GQW6_CHAGB Putative uncharacterized protein OS=Chaet...    34   4.2  
tr|Q6CI19|Q6CI19_YARLI YALI0A02453p OS=Yarrowia lipolytica GN=YA...    33   7.2  

>tr|A7QR98|A7QR98_VITVI Chromosome chr13 scaffold_149, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00003731001
           PE=4 SV=1
          Length = 313

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 15/52 (28%)
 Frame = +1

Query: 1   LDLIERELGDLRSRIHVLE--GG-------------SDHHDSGEVVSEKSVG 111
           L L+EREL DLR R+H LE  GG             SD+   G+V SEKSVG
Sbjct: 257 LFLMERELADLRRRVHCLETDGGRLRENNEEASENASDNEGGGDVCSEKSVG 308


>tr|A5C177|A5C177_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033019 PE=4 SV=1
          Length = 318

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 15/52 (28%)
 Frame = +1

Query: 1   LDLIERELGDLRSRIHVLE--GG-------------SDHHDSGEVVSEKSVG 111
           L L+EREL DLR R+H LE  GG             SD+   G+V SEKSVG
Sbjct: 262 LFLMERELADLRRRVHCLETDGGRLRENNEEASENASDNEGGGDVCSEKSVG 313


>tr|Q2GQW6|Q2GQW6_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_09638 PE=4 SV=1
          Length = 344

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 259 PWKHSQISKPLR*EKKAQSLK*LALNYAMVPPIIGE*TCLPVAQT 125
           PW+ ++ +KP + EKKA+     A      PP + E T LP+A+T
Sbjct: 289 PWREAEWAKPAKWEKKAEKADTTA---QTAPPAVAEGTQLPIAET 330


>tr|Q6CI19|Q6CI19_YARLI YALI0A02453p OS=Yarrowia lipolytica
           GN=YALI0A02453g PE=4 SV=1
          Length = 762

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = -2

Query: 258 PGNIHKSQSLLDERRKLRA*NSLR*TMPWYHQSLESELAYLLRKLEEASAYA 103
           P N+H  QS +DE   L A NSL    P  +QSL S+   LL   + AS+ A
Sbjct: 596 PSNMHSRQSSVDENMLLPALNSLS-VSPNKNQSLNSDQVPLLSSYDNASSSA 646