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NBDC - LSDB Archive
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BP917843
Clone id YMU001_000106_C02
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TATAGGCTCCACAGAATTACTGGCATTGGCAGCCAGTAATACAACCACATATTATGAGCG
AAGCCCGGCAAGTATAGGCTCCACGCGAGCCTCAACTACATGTGACTGCATAACCCTTGC
TCAACAGCTGTCTTTCTCTGCCAAGGTTGCTAACACACTACAACAATGCCTTAATCTTGG
TAAAGGCTATGACCCATTACAAAACATACTTCAGTCCATCTCTCTTCAAAATCAAGGATC
ACAGAAAAACGAACAACCAAAATGTCTTAGTCTTGGAAAAGGTTACAACCCATTACGAAA
CCATTCATCACTCCATCGCACTTCAAATTCGAGAAGCTAAAAAATCCCTCTGCTCCCTTA
AGTCATGATGCCCCCCT
■■Homology search results ■■ -
sp_hit_id Q8IYA6
Definition sp|Q8IYA6|CKP2L_HUMAN Cytoskeleton-associated protein 2-like OS=Homo sapiens
Align length 33
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917843|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C02.
         (377 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IYA6|CKP2L_HUMAN Cytoskeleton-associated protein 2-like OS=...    33   0.57 
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain...    31   2.2  
sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo sa...    30   3.7  
sp|Q09623|YS84_CAEEL Uncharacterized RING finger protein ZK945.4...    29   6.3  
sp|A2BXL9|YCF4_PROM5 Photosystem I assembly protein ycf4 OS=Proc...    29   6.3  
sp|Q8VDU0|GPSM2_MOUSE G-protein-signaling modulator 2 OS=Mus mus...    29   6.3  
sp|P87365|OPSB_ORYLA Blue-sensitive opsin OS=Oryzias latipes PE=...    29   8.3  
sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapien...    29   8.3  
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain...    29   8.3  
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain...    29   8.3  
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ...    29   8.3  
sp|Q15075|EEA1_HUMAN Early endosome antigen 1 OS=Homo sapiens GN...    29   8.3  

>sp|Q8IYA6|CKP2L_HUMAN Cytoskeleton-associated protein 2-like
           OS=Homo sapiens GN=CKAP2L PE=1 SV=3
          Length = 745

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 125 QLSFSAKVANTLQQCLNLGKGYDPLQNILQSIS 223
           QL  S+K+ NTL +CLNL +G  P   IL  +S
Sbjct: 514 QLELSSKINNTLTECLNLIEGGVPSNEILNILS 546


>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain
           KV1772) GN=gag PE=3 SV=1
          Length = 442

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 71  SIGSTRASTTCDCI---TLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISLQNQGS 241
           ++  T AST C      TL  ++   A V   +Q C ++G     +Q + Q++  Q +  
Sbjct: 321 TLSYTNASTDCQKQMDRTLGTRVQ-QATVEEKMQACRDVGSEGFKMQLLAQALRPQGKAG 379

Query: 242 QKNEQPKCLSLGK 280
           QK    KC + GK
Sbjct: 380 QKGVNQKCYNCGK 392


>sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo
           sapiens GN=GPSM2 PE=1 SV=2
          Length = 677

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = +2

Query: 110 ITLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISL--------QNQGSQKNEQPKC 265
           + LA+QL   A  A   Q C +LG  Y  LQ+  ++I          Q    +  E   C
Sbjct: 262 LLLARQLKDRAVEA---QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 318

Query: 266 LSLGKGYNPLRNH 304
            SLG  Y  L NH
Sbjct: 319 WSLGNAYTALGNH 331


>sp|Q09623|YS84_CAEEL Uncharacterized RING finger protein ZK945.4
           OS=Caenorhabditis elegans GN=ZK945.4 PE=2 SV=3
          Length = 499

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 213 SPSLFKIKDHRKTNNQNVLV----LEKVTTHYETIHHSIALQIREAKKSLCS 356
           S SL  ++D  K     ++     L+K + H+E  H S+ L++ E ++++CS
Sbjct: 159 SISLVCMRDRCKKRQNRLMCSECFLDKCSDHFEHEHSSLHLELPELRRNICS 210


>sp|A2BXL9|YCF4_PROM5 Photosystem I assembly protein ycf4
           OS=Prochlorococcus marinus (strain MIT 9515) GN=ycf4
           PE=3 SV=1
          Length = 185

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
 Frame = +2

Query: 170 LNLGKGYDPLQNILQSISLQNQGSQKNEQPKC---------LSLGKGYNPLR 298
           +N G GY+    + QS+ ++ +G  K+ + K          L + +G+NP R
Sbjct: 88  INFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRR 139


>sp|Q8VDU0|GPSM2_MOUSE G-protein-signaling modulator 2 OS=Mus
           musculus GN=Gpsm2 PE=1 SV=1
          Length = 672

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = +2

Query: 110 ITLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISL--------QNQGSQKNEQPKC 265
           + LA+QL   A  A   Q C +LG  Y  LQ+  ++I          Q    +  E   C
Sbjct: 262 LLLARQLKDRAVEA---QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 318

Query: 266 LSLGKGYNPLRNH 304
            SLG  Y  L NH
Sbjct: 319 WSLGNAYTALGNH 331


>sp|P87365|OPSB_ORYLA Blue-sensitive opsin OS=Oryzias latipes PE=2
           SV=1
          Length = 352

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 224 ERWTEVCFVMGHSLYQD*GIVVVC*QPWQRKTAVEQGLCSHM*LRLAWSLYLP 66
           ERW  +C  +G+ +++    ++ C   W        GLC+ +   + WS Y+P
Sbjct: 140 ERWLVICKPLGNFVFKSEHALLCCALTWVC------GLCASVPPLVGWSRYIP 186


>sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapiens
           GN=GOLGA3 PE=1 SV=2
          Length = 1498

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +2

Query: 5   GSTELLALAASNTTTYYERSPASIG--STRASTTCDCITLAQQL--SFSAKVANTLQQCL 172
           G  E L+L AS          A +   ST+     +C   +QQ   S S++V    Q C 
Sbjct: 419 GQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCW 478

Query: 173 NLGKGYDPLQNILQS 217
           +L +    LQN+L++
Sbjct: 479 DLERAMTDLQNMLEA 493


>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS2) GN=gag PE=3 SV=1
          Length = 442

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 71  SIGSTRASTTCDCI---TLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISLQNQGS 241
           ++  T AST C      TL  ++   A V   +Q C ++G     +Q + Q++  Q +  
Sbjct: 321 TLSYTNASTDCQKQMDRTLGTRVQ-QATVEEKMQACRDVGSEGFKMQLLAQALRPQGKAG 379

Query: 242 QKNEQPKCLSLGK 280
            K    KC + GK
Sbjct: 380 HKGVNQKCYNCGK 392


>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS1) GN=gag PE=3 SV=1
          Length = 442

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 71  SIGSTRASTTCDCI---TLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISLQNQGS 241
           ++  T AST C      TL  ++   A V   +Q C ++G     +Q + Q++  Q +  
Sbjct: 321 TLSYTNASTDCQKQMDRTLGTRVQ-QATVEEKMQACRDVGSEGFKMQLLAQALRPQGKAG 379

Query: 242 QKNEQPKCLSLGK 280
            K    KC + GK
Sbjct: 380 HKGVNQKCYNCGK 392
tr_hit_id Q7RPV2
Definition tr|Q7RPV2|Q7RPV2_PLAYO CCAAT-box DNA binding protein subunit B, putative OS=Plasmodium yoelii yoelii
Align length 37
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917843|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C02.
         (377 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7RPV2|Q7RPV2_PLAYO CCAAT-box DNA binding protein subunit B, ...    34   3.1  
tr|A3QI97|A3QI97_SHELP Diguanylate cyclase/phosphodiesterase wit...    34   4.1  
tr|B5DXL4|B5DXL4_DROPS GA26608 OS=Drosophila pseudoobscura pseud...    33   5.4  
tr|Q3E9D9|Q3E9D9_ARATH Uncharacterized protein At5g18750.1 OS=Ar...    33   7.0  
tr|B4G5U0|B4G5U0_DROPE GL24432 OS=Drosophila persimilis GN=GL244...    33   7.0  
tr|A0CMJ7|A0CMJ7_PARTE Chromosome undetermined scaffold_21, whol...    33   7.0  
tr|Q5LTH3|Q5LTH3_SILPO Fatty acid desaturase family protein OS=S...    33   9.2  
tr|B4DZE3|B4DZE3_HUMAN cDNA FLJ55314, weakly similar to Cytoskel...    33   9.2  

>tr|Q7RPV2|Q7RPV2_PLAYO CCAAT-box DNA binding protein subunit B,
           putative OS=Plasmodium yoelii yoelii GN=PY01353 PE=4
           SV=1
          Length = 1785

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 153 THYNNALILVKAMTHYKTYFSPSLFKIKDHRKTNNQN 263
           T Y N LI  K  THY  YF   LF + D+   N+ N
Sbjct: 801 TCYENLLINKKIKTHYLNYFVERLFNMNDNNDNNDNN 837


>tr|A3QI97|A3QI97_SHELP Diguanylate cyclase/phosphodiesterase with
           GAF sensor OS=Shewanella loihica (strain ATCC BAA-1088 /
           PV-4) GN=Shew_3329 PE=4 SV=1
          Length = 643

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 98  TCDCITLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISLQNQGSQKNEQPKCLSLG 277
           T +  +L ++L    +    ++  L   K +DPL  +   +   NQ SQ+  QP  LS  
Sbjct: 193 TLELTSLNKKLLSEIEQRTVIENSLQFHKDHDPLTGLANRLGFVNQLSQQLSQPDELSTY 252

Query: 278 KGYNPLRNHSSLHRT 322
             Y  LRN  S++ +
Sbjct: 253 VIYFGLRNFKSINES 267


>tr|B5DXL4|B5DXL4_DROPS GA26608 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA26608 PE=4 SV=1
          Length = 963

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
 Frame = +2

Query: 59   RSPASIGSTRASTTCDCITLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQSISLQN-- 232
            +S +  G+  AS +    T      +++K +N+  +  N G G+    ++ Q +S  N  
Sbjct: 719  KSDSIDGNASASGSGGQRTSYATSGYNSKTSNSSTKSSNSGSGFSAFNSLTQRLSNLNFL 778

Query: 233  -------------QGSQKN---EQPKCLSLGKGYNPLRNHSSLHRTSNSRS 337
                         +GS      +  K +S+ K YN   NHSS + ++NS S
Sbjct: 779  SNSDKKSSSSVGHEGSNSTAHRQHRKAMSMLKSYNQHNNHSSNNHSNNSSS 829


>tr|Q3E9D9|Q3E9D9_ARATH Uncharacterized protein At5g18750.1
           OS=Arabidopsis thaliana GN=At5g18750 PE=4 SV=1
          Length = 884

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 89  ASTTCDCITLAQQLSFSAKVANTLQQCLNLGKGYDPLQNILQ 214
           AS T  C    ++  +  K+ NTL  CLN GK Y   Q   Q
Sbjct: 192 ASFTTSCAFCHRKYEYQRKLINTLMTCLNCGKQYVAFQETFQ 233


>tr|B4G5U0|B4G5U0_DROPE GL24432 OS=Drosophila persimilis GN=GL24432
            PE=4 SV=1
          Length = 1417

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
 Frame = +2

Query: 134  FSAKVANTLQQCLNLGKGYDPLQNILQSISLQN---------------QGSQKN---EQP 259
            +++K +N+  +  N G G+    ++ Q +S  N               +GS      +  
Sbjct: 1198 YNSKTSNSSTKSSNSGSGFSAFNSLTQRLSNLNFLSNSDKKSSSSVGHEGSNSTAHRQHR 1257

Query: 260  KCLSLGKGYNPLRNHSSLHRTSNSRS 337
            K +S+ K YN   NHSS + ++NS S
Sbjct: 1258 KAMSMLKSYNQHNNHSSNNHSNNSSS 1283


>tr|A0CMJ7|A0CMJ7_PARTE Chromosome undetermined scaffold_21, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00008493001 PE=4 SV=1
          Length = 158

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +2

Query: 62  SPASIGSTRASTTCDCITLAQQLSFSAKVANTLQQCLNLGK----GYDPLQNILQSISLQ 229
           S +S+  T+ S +    T   Q +F   +++  Q  +NL       Y PLQ+++   + +
Sbjct: 51  SSSSVQPTQNSKSTQISTQTTQTAFQNTLSSCFQSPMNLTSYPVLRYPPLQDVVHKANTK 110

Query: 230 NQGSQKNEQPKCLSLGKGYNPLRNHSSLHRTSN 328
           + G  K  + KC  +      +++  + H+  N
Sbjct: 111 SSGPLKRRKYKCSIINLSQPSIQSPQTTHKLFN 143


>tr|Q5LTH3|Q5LTH3_SILPO Fatty acid desaturase family protein
           OS=Silicibacter pomeroyi GN=SPO1441 PE=4 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 89  LAWSLYLPGFAHNMWLYYWLPMPVILWSL 3
           LAW+L+LPG A  +W+    PMP+  ++L
Sbjct: 166 LAWALHLPGMAGVLWVVSLSPMPIWAFAL 194


>tr|B4DZE3|B4DZE3_HUMAN cDNA FLJ55314, weakly similar to
           Cytoskeleton-associated protein 2 OS=Homo sapiens PE=2
           SV=1
          Length = 580

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 125 QLSFSAKVANTLQQCLNLGKGYDPLQNILQSIS 223
           QL  S+K+ NTL +CLNL +G  P   IL  +S
Sbjct: 349 QLELSSKINNTLTECLNLIEGGVPSNEILNILS 381