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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917844
Clone id YMU001_000106_C03
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAATCTCAATTCGTGTGTCAATTGGGATGAGGATAATGCGGAGGCAATGTCGGCCATT
GCGGAATCTCTTACAAAGGATATTTCTTCGGCCATTCAGACTTTAAAGACTGCCAACGAT
ATGACATCATAATGTTTGATCGGGATTCTACGATGCAAGCAATCACCCTTCTTGGACTAT
TATTTTCCATCCAGTTTACACCAGGAAAATCCATGCAATCATTTCTTATGAAGGCTAAAG
TTATTTGTGATCAACTATCAGCTATGAAAAGTGTATTGACGAGTACTCAATTAGCTACTT
AGGTTCTCACGAGTTGCCTGAGGCGTATGAAACGGTGTCTAGGACACTTTGGCTACAAGT
CACTAAGGAAAAGTTGGAATTTGATGGTCTCAACTCTTTTCTCATTGAGGAAACCGTGTT
GATAACTCA
■■Homology search results ■■ -
sp_hit_id Q5H2A5
Definition sp|Q5H2A5|KUP_XANOR Probable potassium transport system protein kup OS=Xanthomonas oryzae pv. oryzae
Align length 23
Score (bit) 29.6
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917844|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C03.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5H2A5|KUP_XANOR Probable potassium transport system protein ...    30   5.3  
sp|Q2P576|KUP_XANOM Probable potassium transport system protein ...    30   5.3  
sp|Q3BQF3|KUP_XANC5 Probable potassium transport system protein ...    30   5.3  
sp|Q8PHV1|KUP_XANAC Probable potassium transport system protein ...    30   5.3  
sp|Q6TAC4|V2R26_MOUSE Vomeronasal type-2 receptor 26 OS=Mus musc...    29   7.1  
sp|Q12675|ATC4_YEAST Probable phospholipid-transporting ATPase D...    29   9.3  

>sp|Q5H2A5|KUP_XANOR Probable potassium transport system protein kup
           OS=Xanthomonas oryzae pv. oryzae GN=kup PE=3 SV=1
          Length = 635

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 339 LGHFGYKSLRKSWNLMVSTLFSL 407
           +GHFG K++R+SW  +V  + +L
Sbjct: 247 MGHFGAKAIRRSWQFVVLPMLTL 269


>sp|Q2P576|KUP_XANOM Probable potassium transport system protein kup
           OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
           GN=kup PE=3 SV=1
          Length = 635

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 339 LGHFGYKSLRKSWNLMVSTLFSL 407
           +GHFG K++R+SW  +V  + +L
Sbjct: 247 MGHFGAKAIRRSWQFVVLPMLTL 269


>sp|Q3BQF3|KUP_XANC5 Probable potassium transport system protein kup
           OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
           GN=kup PE=3 SV=1
          Length = 634

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 339 LGHFGYKSLRKSWNLMVSTLFSL 407
           +GHFG K++R+SW  +V  + +L
Sbjct: 246 MGHFGAKAIRRSWQFVVLPMLTL 268


>sp|Q8PHV1|KUP_XANAC Probable potassium transport system protein kup
           OS=Xanthomonas axonopodis pv. citri GN=kup PE=3 SV=1
          Length = 634

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 339 LGHFGYKSLRKSWNLMVSTLFSL 407
           +GHFG K++R+SW  +V  + +L
Sbjct: 246 MGHFGAKAIRRSWQFVVLPMLTL 268


>sp|Q6TAC4|V2R26_MOUSE Vomeronasal type-2 receptor 26 OS=Mus
           musculus GN=Vmn2r26 PE=2 SV=2
          Length = 855

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 46  AMSAIAESLTKDISSAIQTLKTANDMTS*CLIGI-LRCKQSPFLDY-YFPSSLHQENPCN 219
           A+ AIA++L +++S     L+   D ++ CL+   L  K  PFL       S ++EN  N
Sbjct: 409 AVYAIAQALHEELS-----LRVEGDSSNKCLLQAPLPWKLHPFLQKGQLGRSTNEENTVN 463

Query: 220 HFL*RLKLFVINYQ 261
             +  +KL + NYQ
Sbjct: 464 KEVSAIKLDIFNYQ 477


>sp|Q12675|ATC4_YEAST Probable phospholipid-transporting ATPase DNF2
           OS=Saccharomyces cerevisiae GN=DNF2 PE=1 SV=1
          Length = 1612

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 64  ESLTKDISSAIQTLKTANDMTS*CLIGILRCKQSPFLDYYFPSSLHQENPCNHFL*RLKL 243
           E + KD  + I  L++ +D T  C   +    +    D    S  HQ+  C HFL  L L
Sbjct: 762 EEIAKDRETMIDELRSMSDNTQFCPEDLTFVSKEIVEDLKGSSGDHQQKCCEHFLLALAL 821
tr_hit_id Q7UTR5
Definition tr|Q7UTR5|Q7UTR5_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica
Align length 39
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917844|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_C03.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UTR5|Q7UTR5_RHOBA Putative uncharacterized protein OS=Rhodo...    35   1.4  
tr|A5AS33|A5AS33_VITVI Putative uncharacterized protein OS=Vitis...    28   6.9  
tr|Q8RIR6|Q8RIR6_FUSNN Nickel transport system permease protein ...    33   7.2  
tr|Q7P431|Q7P431_FUSNV Nickel transport system permease protein ...    33   7.2  

>tr|Q7UTR5|Q7UTR5_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB3723 PE=4 SV=1
          Length = 172

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 303 VLTSCLRRMKRCLGHFGYKSLRKSWNLMVSTLFSLRKPC 419
           V T CL R+KRC+  FG K LR+S+  +   L +  K C
Sbjct: 55  VKTFCLCRLKRCVQQFGGKWLRQSFGKLAKCLMAKTKDC 93


>tr|A5AS33|A5AS33_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041002 PE=4 SV=1
          Length = 843

 Score = 28.5 bits (62), Expect(2) = 6.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 132 MFDRDSTMQAITLLGLLFSIQFTPGKSMQSFLMKAKVICDQLSAMK 269
           M+++ S    + L+ +LF++  T   S+   L +   I +QLS++K
Sbjct: 91  MYEKPSANYKVHLMKILFNLNMTENASVAQHLNEFNTITNQLSSVK 136



 Score = 23.5 bits (49), Expect(2) = 6.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 314 LPEAYETVSRTLWLQVTKEKLEFDGLNSFLIEETV 418
           LP  +ET+   +     KEKL+++ +   ++ E +
Sbjct: 152 LPNIWETMRMVVRNSTGKEKLKYNDIQDLILAEEI 186


>tr|Q8RIR6|Q8RIR6_FUSNN Nickel transport system permease protein
           nikB OS=Fusobacterium nucleatum subsp. nucleatum
           GN=FN1503 PE=3 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +3

Query: 132 MFDRDSTMQAITLLGLLFSIQFTPGKSMQSFLMKAKV-ICDQLSAMKSVLTSTQLAT*VL 308
           +FD  S +  I++L  +F IQ +PG   +++L  + + I D+L  +K       L + ++
Sbjct: 8   IFDIISALLVISILAFIF-IQLSPGDPAENYLRASHLPITDEL--LKQKREELGLNSPLI 64

Query: 309 TSCLRRMKRCL-GHFGYKSLRK 371
              L+ +K  L G+FGY  LRK
Sbjct: 65  IQYLKWLKNVLLGNFGYSFLRK 86


>tr|Q7P431|Q7P431_FUSNV Nickel transport system permease protein
           nikB OS=Fusobacterium nucleatum subsp. vincentii ATCC
           49256 GN=FNV0348 PE=3 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +3

Query: 132 MFDRDSTMQAITLLGLLFSIQFTPGKSMQSFLMKAKV-ICDQLSAMKSVLTSTQLAT*VL 308
           +FD  S +  I++L  +F IQ +PG   +++L  + + I D+L  +K       L + ++
Sbjct: 8   IFDIISALLVISILAFIF-IQLSPGDPAENYLRASHLPITDEL--LKQKREELGLNSPLI 64

Query: 309 TSCLRRMKRCL-GHFGYKSLRK 371
              L+ +K  L G+FGY  LRK
Sbjct: 65  IQYLKWLKNVLLGNFGYSFLRK 86