BP917847 |
Clone id |
YMU001_000106_C09 |
Library |
YMU01 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000106_C09. |
Accession |
BP917847 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2761Contig1 |
Sequence |
GAGCCTCTCTTTGAATGCATCACTAGGCGGCCCAAGCAACTTCTCTAACATCTTGACCGC AGGCAACTCTACCTCCACAGGCAATAGTGCTTCCTTTCCATACACCAAATGAAATGAAGT AAACCCTGTACCTGTCTTCACCGAAGTACGGTAAGCCCATAATGCACTAGGCAATTCCAA ATCCCAATTCTTTCCTTGGTGCTCTGTCACTTTCGAAAGAATCTGTACCAACTCACCATT GAATCTTTCATTCAAGCCATTACACTGTGGGTAATAAGGAGTGGTATGCTGGTGCCTAAT CTTCATCTTTGCACATAAAAAATCTAGCAGTTTAGCTCTAAAGCCAGGCCCCTTATCTGA AAGTAACTCCAGTGGCACCCCAAACTTGCAACATATTTCATCATACACAAATTTTGCCAC ATCCTTTGCAGTGATCTGTATTACTACTATAGCCTCTGCCCATCTAGAGAGATAGTCCAC TGCCGTCAAGATATAGCTTTTGCCCCTGCTTGTGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P21414 |
Definition |
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus |
Align length |
137 |
Score (bit) |
73.9 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917847|Adiantum capillus-veneris mRNA, clone: YMU001_000106_C09. (516 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 74 4e-13 sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi... 72 1e-12 sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi... 72 1e-12 sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi... 72 2e-12 sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murin... 72 2e-12 sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus... 72 2e-12 sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v... 72 2e-12 sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 72 2e-12 sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation muri... 71 3e-12 sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia... 71 3e-12 sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 71 3e-12 sp|P03360|POL_AVIRE Pol polyprotein (Fragment) OS=Avian reticulo... 71 3e-12 sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (... 70 5e-12 sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 65 2e-10 sp|P03359|POL_WMSV Pol polyprotein (Fragment) OS=Woolly monkey s... 58 3e-08 sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 53 1e-06 sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficien... 52 2e-06 sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficien... 51 3e-06 sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficien... 49 1e-05 sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficien... 49 2e-05 sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 49 2e-05 sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficienc... 48 3e-05 sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 47 4e-05 sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficienc... 47 4e-05 sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leuk... 47 7e-05 sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficien... 46 9e-05 sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 46 9e-05 sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficien... 45 2e-04 sp|P51517|POL_SRV2 Pol polyprotein OS=Simian retrovirus SRV-2 GN... 45 3e-04 sp|P04025|POL_SRV1 Pol polyprotein OS=Simian retrovirus SRV-1 GN... 45 3e-04
>sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1 Length = 1165
Score = 73.9 bits (180), Expect = 4e-13 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L +D S W EA TA V K + +EI +FG+P L SD GP F A++ Sbjct: 893 GNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVS 952
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVT-EHQGKNWDLELPSALWAYR 148 L ++ I + Y PQ +G ER N + + L+K+ E GK+W LP AL R Sbjct: 953 QGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRAR 1012
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 1013 -NTPGRFGLTPYEILYG 1028
>sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 Length = 1204
Score = 72.4 bits (176), Expect = 1e-12 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA + TAK V K + +EI +FG+P L +D GP F +K+ Sbjct: 931 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + + + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 147 TSVKTGTGFTSFHLVYGKEALLPVEVELPAVKMLEKLLGPPSDAFKERL 1 + G T + ++YG P V P M + P A + L Sbjct: 1051 -NTPGPHGLTPYEILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQAL 1095
>sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 Length = 1204
Score = 72.4 bits (176), Expect = 1e-12 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA + TAK V K + +EI +FG+P L +D GP F +K+ Sbjct: 931 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + + + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 147 TSVKTGTGFTSFHLVYGKEALLPVEVELPAVKMLEKLLGPPSDAFKERL 1 + G T + ++YG P V P M + P A + L Sbjct: 1051 -NTPGPHGLTPYEILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQAL 1095
>sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 Length = 1204
Score = 72.0 bits (175), Expect = 2e-12 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L +D S W EA + TAK V K + +EI +FG+P L +D GP F +K+ Sbjct: 931 GYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 990
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + + + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 991 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1050
Query: 147 TSVKTGTGFTSFHLVYGKEALLPVEVELPAVKMLEKLLGPPSDAFKERL 1 + G T + ++YG P V P M + P A + L Sbjct: 1051 -NTPGPHGLTPYEILYGAP---PPLVNFPDPDMAKVTHNPSLQAHLQAL 1095
>sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=pol PE=3 SV=1 Length = 282
Score = 72.0 bits (175), Expect = 2e-12 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA + TAK V K + +EI +FG+P L +D GP F +K+ Sbjct: 12 GYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 71
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + I + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 72 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 131
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 132 -NTPGPHGLTPYEILYG 147
>sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 Length = 1196
Score = 72.0 bits (175), Expect = 2e-12 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA + TA+ V+K + +EI +FG+P L SD GP F +++ Sbjct: 926 GYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVS 985
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + I + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 986 QSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRAR 1045
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 1046 -NTPGPHGLTPYEILYG 1061
>sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia virus GN=pol PE=1 SV=2 Length = 1199
Score = 71.6 bits (174), Expect = 2e-12 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L +D S W EA + TAK V K + +EI +FG+P L +D GP F +K+ Sbjct: 926 GYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 985
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + I + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 986 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1045
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 1046 -NTPGPHGLTPYEILYG 1061
>sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 Length = 1127
Score = 71.6 bits (174), Expect = 2e-12 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L +D S W EA TA V K + +EI +FG+P L SD GP F A++ Sbjct: 855 GNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVS 914
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVT-EHQGKNWDLELPSALWAYR 148 L ++ I + Y PQ +G ER N + + L+K+ E GK+W LP AL R Sbjct: 915 QGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRAR 974
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + +++G Sbjct: 975 -NTPGQFGLTPYEILHG 990
>sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 Length = 581
Score = 70.9 bits (172), Expect = 3e-12 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA TAK V K + +EI +FG+P L +D GP F +++ Sbjct: 311 GYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVS 370
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + I + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 371 QSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRAR 430
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 431 -NTPGPHGLTPYEILYG 446
>sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 Length = 1196
Score = 70.9 bits (172), Expect = 3e-12 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Frame = -1
Query: 504 GKSYILTAVDYLSRWAEAIVVIQITAKDVAKFVYDEICCKFGVPLELLSDKGPGFRAKLL 325 G Y+L VD S W EA TAK V K + +EI +FG+P L +D GP F +++ Sbjct: 926 GYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVS 985
Query: 324 DFLCAKMKIRHQHTTPYYPQCNGLNERFNGELVQILSKVTEHQG-KNWDLELPSALWAYR 148 + + I + Y PQ +G ER N + + L+K+T G ++W L LP AL+ R Sbjct: 986 QSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRAR 1045
Query: 147 TSVKTGTGFTSFHLVYG 97 + G T + ++YG Sbjct: 1046 -NTPGPHGLTPYEILYG 1061
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BQS5 |
Definition |
tr|A5BQS5|A5BQS5_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
165 |
Score (bit) |
142.0 |
E-value |
8.0e-33 |
Report |
|